Wall clock time and date at job start Mon Mar 30 2020 06:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.35648 * 124.81214 * 192.65613 * 3 2 1 5 5 C 1.39171 * 115.40507 * 180.02562 * 4 3 2 6 6 C 1.40170 * 112.94779 * 0.23600 * 5 4 3 7 7 C 1.39327 * 120.15797 * 180.28629 * 6 5 4 8 8 C 1.39671 * 121.38675 * 359.48620 * 7 6 5 9 9 C 1.47073 * 119.63733 * 180.23464 * 8 7 6 10 10 O 1.21277 * 119.99878 * 180.02562 * 9 8 7 11 11 C 1.39374 * 120.72829 * 0.25813 * 8 7 6 12 12 C 1.39942 * 119.96739 * 359.97438 * 11 8 7 13 13 C 1.40518 * 120.28122 * 179.97438 * 12 11 8 14 14 H 1.08003 * 119.99447 * 204.98870 * 13 12 11 15 15 C 1.40138 * 119.99844 * 24.99750 * 13 12 11 16 16 N 1.30739 * 120.00256 * 17.81579 * 15 13 12 17 17 Si 1.86802 * 119.99644 * 197.81513 * 15 13 12 18 18 H 1.48505 * 109.47154 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47088 * 119.99787 * 17 15 13 20 20 H 1.48498 * 109.47154 * 239.99904 * 17 15 13 21 21 S 1.75482 * 124.82003 * 12.69606 * 3 2 1 22 22 H 1.07994 * 122.29513 * 0.02562 * 4 3 2 23 23 H 1.07999 * 119.30138 * 179.77151 * 7 6 5 24 24 H 1.07994 * 120.00151 * 0.02562 * 9 8 7 25 25 H 1.07992 * 120.01733 * 180.02562 * 11 8 7 26 26 H 0.96999 * 119.99649 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3419 1.0876 0.2440 5 6 4.7150 0.8664 0.1936 6 6 5.0438 -0.4618 -0.1106 7 6 6.3790 -0.8510 -0.1933 8 6 7.4167 0.0613 0.0112 9 6 8.8127 -0.3903 -0.0905 10 8 9.7188 0.3962 0.0864 11 6 7.1438 1.3947 0.3112 12 6 5.8181 1.8319 0.4096 13 6 5.5354 3.1747 0.7122 14 1 4.5963 3.4374 1.1763 15 6 6.4719 4.1728 0.4114 16 7 7.4318 3.9326 -0.4432 17 14 6.3489 5.8466 1.2317 18 1 5.1823 5.8631 2.1504 19 1 7.5901 6.1127 2.0022 20 1 6.1761 6.8948 0.1941 21 16 3.5706 -1.4043 -0.3166 22 1 2.9214 2.0581 0.4624 23 1 6.6166 -1.8788 -0.4249 24 1 9.0309 -1.4221 -0.3226 25 1 7.9550 2.0904 0.4667 26 1 8.0802 4.6234 -0.6510 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396281729.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:20 Heat of formation + Delta-G solvation = 22.424520 kcal Electronic energy + Delta-G solvation = -15256.047222 eV Core-core repulsion = 12583.793111 eV Total energy + Delta-G solvation = -2672.254110 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.89529 -37.73089 -36.18900 -34.76303 -33.71435 -30.43596 -29.05868 -26.02371 -24.83239 -22.08128 -21.73473 -19.64107 -18.32529 -17.54748 -16.02010 -15.49002 -15.25981 -14.91604 -14.61191 -13.68817 -13.48578 -13.42585 -13.28240 -12.89101 -12.47140 -12.28745 -12.07091 -11.91044 -11.60525 -11.49805 -10.90275 -10.71028 -10.43604 -10.10750 -9.86469 -9.73651 -9.13730 -8.64017 -7.69280 -7.47336 -7.12350 -4.85281 0.85546 2.03706 2.16887 2.39718 2.64374 2.75238 2.81397 2.83378 3.28625 3.45583 3.53767 3.94248 4.06573 4.64431 4.91314 5.04605 5.73777 5.90144 6.00967 6.21503 6.40694 6.47691 6.58067 6.65630 6.80565 7.23744 7.29290 7.34065 7.47758 7.86434 8.01437 8.06300 8.08466 8.21828 9.39092 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.015760 B = 0.008549 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.199966 B = 3274.353366 C = 4968.001139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.306 3.694 3 C -0.237 4.237 4 C 0.025 3.975 5 C -0.198 4.198 6 C -0.056 4.056 7 C -0.197 4.197 8 C -0.128 4.128 9 C 0.382 3.618 10 O -0.472 6.472 11 C -0.112 4.112 12 C 0.138 3.862 13 C -0.386 4.386 14 H 0.099 0.901 15 C 0.062 3.938 16 N -0.735 5.735 17 Si 0.923 3.077 18 H -0.252 1.252 19 H -0.263 1.263 20 H -0.266 1.266 21 S 0.066 5.934 22 H 0.134 0.866 23 H 0.105 0.895 24 H 0.089 0.911 25 H 0.138 0.862 26 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 -1.855 0.907 2.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.007 4.007 3 C -0.355 4.355 4 C -0.009 4.009 5 C -0.204 4.204 6 C -0.172 4.172 7 C -0.225 4.225 8 C -0.133 4.133 9 C 0.242 3.758 10 O -0.346 6.346 11 C -0.134 4.134 12 C 0.132 3.868 13 C -0.412 4.412 14 H 0.117 0.883 15 C -0.164 4.164 16 N -0.355 5.355 17 Si 0.745 3.255 18 H -0.175 1.175 19 H -0.188 1.188 20 H -0.191 1.191 21 S 0.328 5.672 22 H 0.152 0.848 23 H 0.123 0.877 24 H 0.105 0.895 25 H 0.156 0.844 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.278 -2.833 0.519 2.893 hybrid contribution 0.600 2.011 0.440 2.144 sum 0.878 -0.822 0.959 1.538 Atomic orbital electron populations 1.81167 1.11561 1.08230 1.13340 1.24543 0.91182 0.93062 0.91870 1.18915 0.87800 0.99368 1.29394 1.20098 0.92018 0.96942 0.91835 1.18805 0.92084 0.93836 1.15626 1.22263 0.96172 0.95893 1.02892 1.19564 0.88997 0.98172 1.15767 1.20272 0.94090 0.95110 1.03789 1.24048 0.87808 0.92786 0.71114 1.90470 1.48745 1.58592 1.36825 1.21562 0.96792 0.93544 1.01533 1.18427 0.89583 0.91386 0.87450 1.20058 1.02440 0.90966 1.27687 0.88339 1.26338 0.93614 1.02932 0.93505 1.69737 1.09547 1.36276 1.19939 0.85956 0.80503 0.78857 0.80147 1.17491 1.18755 1.19053 1.83502 0.95348 1.10212 1.78111 0.84837 0.87678 0.89488 0.84426 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.13 18.54 41.84 0.78 -8.35 15 2 C 0.31 5.77 15.78 -22.47 -0.35 5.42 15 3 C -0.24 -4.43 6.24 -38.58 -0.24 -4.67 15 4 C 0.02 0.48 9.66 -40.16 -0.39 0.09 15 5 C -0.20 -4.17 6.01 -104.75 -0.63 -4.80 15 6 C -0.06 -1.12 6.46 -38.45 -0.25 -1.37 15 7 C -0.20 -3.70 9.73 -38.64 -0.38 -4.07 15 8 C -0.13 -2.54 5.84 -105.36 -0.62 -3.15 15 9 C 0.38 6.63 11.42 34.31 0.39 7.02 15 10 O -0.47 -9.72 17.10 5.56 0.10 -9.63 15 11 C -0.11 -2.49 8.19 -38.52 -0.32 -2.81 15 12 C 0.14 3.06 5.75 -104.32 -0.60 2.46 15 13 C -0.39 -8.23 8.80 -38.01 -0.33 -8.56 15 14 H 0.10 1.95 7.46 -52.48 -0.39 1.56 15 15 C 0.06 1.27 5.13 -17.30 -0.09 1.18 15 16 N -0.74 -15.76 10.98 55.56 0.61 -15.15 15 17 Si 0.92 15.18 29.60 -169.99 -5.03 10.15 15 18 H -0.25 -4.10 7.11 56.52 0.40 -3.70 15 19 H -0.26 -4.33 7.11 56.52 0.40 -3.93 15 20 H -0.27 -4.34 7.11 56.52 0.40 -3.94 15 21 S 0.07 1.16 23.23 -107.50 -2.50 -1.34 15 22 H 0.13 2.37 7.65 -52.49 -0.40 1.96 15 23 H 0.11 1.66 8.06 -52.49 -0.42 1.23 15 24 H 0.09 1.11 8.06 -52.49 -0.42 0.69 15 25 H 0.14 3.25 5.69 -52.49 -0.30 2.95 15 26 H 0.30 5.74 8.29 -40.82 -0.34 5.40 15 LS Contribution 264.99 15.07 3.99 3.99 Total: -1.00 -24.44 264.99 -6.93 -31.36 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -1.07 Total: 2.24 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -3.80 Total: -13.27 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 1.39 Total: -23.51 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.10 Total: -9.63 kcal Atomic # 14 Polarization: 15.18 SS G_CDS: -5.03 Total: 10.15 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.50 Total: -1.34 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -24.44 -6.93 -31.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281729.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.786 kcal (2) G-P(sol) polarization free energy of solvation -24.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds