Wall clock time and date at job start Mon Mar 30 2020 06:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.35648 * 124.81214 * 192.65613 * 3 2 1 5 5 C 1.39171 * 115.40507 * 180.02562 * 4 3 2 6 6 C 1.40170 * 112.94779 * 0.23600 * 5 4 3 7 7 C 1.39327 * 120.15797 * 180.28629 * 6 5 4 8 8 C 1.39671 * 121.38675 * 359.48620 * 7 6 5 9 9 C 1.47073 * 119.63733 * 180.23464 * 8 7 6 10 10 O 1.21277 * 119.99878 * 180.02562 * 9 8 7 11 11 C 1.39374 * 120.72829 * 0.25813 * 8 7 6 12 12 C 1.39942 * 119.96739 * 359.97438 * 11 8 7 13 13 C 1.40518 * 120.28122 * 179.97438 * 12 11 8 14 14 H 1.08003 * 119.99447 * 204.98870 * 13 12 11 15 15 C 1.40138 * 119.99844 * 24.99750 * 13 12 11 16 16 N 1.30739 * 120.00256 * 17.81579 * 15 13 12 17 17 Si 1.86802 * 119.99644 * 197.81513 * 15 13 12 18 18 H 1.48505 * 109.47154 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47088 * 119.99787 * 17 15 13 20 20 H 1.48498 * 109.47154 * 239.99904 * 17 15 13 21 21 S 1.75482 * 124.82003 * 12.69606 * 3 2 1 22 22 H 1.07994 * 122.29513 * 0.02562 * 4 3 2 23 23 H 1.07999 * 119.30138 * 179.77151 * 7 6 5 24 24 H 1.07994 * 120.00151 * 0.02562 * 9 8 7 25 25 H 1.07992 * 120.01733 * 180.02562 * 11 8 7 26 26 H 0.96999 * 119.99649 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3419 1.0876 0.2440 5 6 4.7150 0.8664 0.1936 6 6 5.0438 -0.4618 -0.1106 7 6 6.3790 -0.8510 -0.1933 8 6 7.4167 0.0613 0.0112 9 6 8.8127 -0.3903 -0.0905 10 8 9.7188 0.3962 0.0864 11 6 7.1438 1.3947 0.3112 12 6 5.8181 1.8319 0.4096 13 6 5.5354 3.1747 0.7122 14 1 4.5963 3.4374 1.1763 15 6 6.4719 4.1728 0.4114 16 7 7.4318 3.9326 -0.4432 17 14 6.3489 5.8466 1.2317 18 1 5.1823 5.8631 2.1504 19 1 7.5901 6.1127 2.0022 20 1 6.1761 6.8948 0.1941 21 16 3.5706 -1.4043 -0.3166 22 1 2.9214 2.0581 0.4624 23 1 6.6166 -1.8788 -0.4249 24 1 9.0309 -1.4221 -0.3226 25 1 7.9550 2.0904 0.4667 26 1 8.0802 4.6234 -0.6510 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396281729.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:20 Heat of formation + Delta-G solvation = 11.441519 kcal Electronic energy + Delta-G solvation = -15256.523481 eV Core-core repulsion = 12583.793111 eV Total energy + Delta-G solvation = -2672.730369 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.39807 -39.25117 -37.74922 -36.28308 -35.24603 -31.98081 -30.59973 -27.56972 -26.34307 -23.60918 -23.22814 -21.16213 -19.82606 -19.07201 -17.52815 -16.93734 -16.76462 -16.40673 -16.07812 -15.21816 -15.00635 -14.96164 -14.70895 -14.41211 -13.99390 -13.83433 -13.60148 -13.38465 -13.14007 -12.87955 -12.34456 -12.16604 -11.89962 -11.63206 -11.37206 -11.23379 -10.57250 -10.17683 -9.23524 -8.96945 -8.60642 -6.43232 -0.68486 0.53221 0.70455 0.87765 1.11233 1.37802 1.44072 1.54999 1.81891 1.98482 2.09195 2.40792 2.57533 3.08557 3.47163 3.62229 4.28120 4.44811 4.51000 4.76501 4.90967 4.95304 5.06799 5.09868 5.26365 5.67425 5.74813 5.83066 5.91437 6.32014 6.47136 6.52741 6.63069 6.72341 7.94213 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.015760 B = 0.008549 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.199966 B = 3274.353366 C = 4968.001139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.316 3.684 3 C -0.232 4.232 4 C 0.016 3.984 5 C -0.211 4.211 6 C -0.082 4.082 7 C -0.186 4.186 8 C -0.134 4.134 9 C 0.392 3.608 10 O -0.509 6.509 11 C -0.152 4.152 12 C 0.117 3.883 13 C -0.420 4.420 14 H 0.103 0.897 15 C 0.032 3.968 16 N -0.774 5.774 17 Si 0.988 3.012 18 H -0.248 1.248 19 H -0.264 1.264 20 H -0.262 1.262 21 S 0.126 5.874 22 H 0.142 0.858 23 H 0.145 0.855 24 H 0.154 0.846 25 H 0.114 0.886 26 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 -3.530 0.791 3.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C 0.003 3.997 3 C -0.350 4.350 4 C -0.019 4.019 5 C -0.217 4.217 6 C -0.198 4.198 7 C -0.213 4.213 8 C -0.138 4.138 9 C 0.253 3.747 10 O -0.385 6.385 11 C -0.175 4.175 12 C 0.111 3.889 13 C -0.446 4.446 14 H 0.121 0.879 15 C -0.190 4.190 16 N -0.395 5.395 17 Si 0.807 3.193 18 H -0.171 1.171 19 H -0.188 1.188 20 H -0.186 1.186 21 S 0.390 5.610 22 H 0.160 0.840 23 H 0.162 0.838 24 H 0.170 0.830 25 H 0.132 0.868 26 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.390 -4.542 0.395 4.575 hybrid contribution 0.668 2.294 0.431 2.427 sum 0.278 -2.248 0.827 2.411 Atomic orbital electron populations 1.81188 1.11885 1.08673 1.13443 1.24449 0.91009 0.92658 0.91555 1.19102 0.87870 1.00106 1.27956 1.20178 0.91588 0.97766 0.92320 1.19046 0.92559 0.94502 1.15550 1.22665 0.97870 0.96134 1.03085 1.19970 0.88182 0.99625 1.13524 1.20725 0.96264 0.94410 1.02428 1.24747 0.85942 0.94699 0.69262 1.90471 1.49392 1.60229 1.38424 1.21455 0.96330 0.94735 1.04959 1.18702 0.90108 0.92216 0.87877 1.20255 1.03393 0.91391 1.29566 0.87923 1.27073 0.92867 1.05762 0.93333 1.69787 1.10682 1.37516 1.21553 0.85023 0.80255 0.74870 0.79130 1.17122 1.18824 1.18603 1.83269 0.92932 1.08030 1.76794 0.84006 0.83779 0.83034 0.86847 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.62 18.54 19.00 0.35 -17.27 15 2 C 0.32 11.22 15.78 88.33 1.39 12.61 15 3 C -0.23 -8.19 6.24 22.92 0.14 -8.05 15 4 C 0.02 0.59 9.66 21.89 0.21 0.81 15 5 C -0.21 -8.83 6.01 -19.94 -0.12 -8.95 15 6 C -0.08 -3.07 6.46 23.00 0.15 -2.92 15 7 C -0.19 -6.48 9.73 22.88 0.22 -6.26 15 8 C -0.13 -5.18 5.84 -20.34 -0.12 -5.30 15 9 C 0.39 12.79 11.42 70.14 0.80 13.59 15 10 O -0.51 -20.87 17.10 -3.02 -0.05 -20.92 15 11 C -0.15 -7.00 8.19 22.96 0.19 -6.81 15 12 C 0.12 5.36 5.75 -19.67 -0.11 5.25 15 13 C -0.42 -18.67 8.80 23.29 0.20 -18.47 15 14 H 0.10 4.23 7.46 -2.91 -0.02 4.21 15 15 C 0.03 1.35 5.13 85.32 0.44 1.79 15 16 N -0.77 -34.97 10.98 21.86 0.24 -34.73 15 17 Si 0.99 31.93 29.60 68.60 2.03 33.96 15 18 H -0.25 -7.75 7.11 99.48 0.71 -7.04 15 19 H -0.26 -8.43 7.11 99.48 0.71 -7.73 15 20 H -0.26 -8.17 7.11 99.48 0.71 -7.46 15 21 S 0.13 4.06 23.23 -56.49 -1.31 2.75 15 22 H 0.14 5.00 7.65 -2.91 -0.02 4.98 15 23 H 0.14 3.82 8.06 -2.91 -0.02 3.79 15 24 H 0.15 3.10 8.06 -2.91 -0.02 3.08 15 25 H 0.11 5.70 5.69 -2.91 -0.02 5.68 15 26 H 0.30 12.29 8.29 -92.71 -0.77 11.52 15 Total: -1.00 -53.78 264.99 5.90 -47.88 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.24 Total: 11.03 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 3.40 Total: -22.71 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.59 Total: -52.00 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.05 Total: -20.92 kcal Atomic # 14 Polarization: 31.93 SS G_CDS: 2.03 Total: 33.96 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.31 Total: 2.75 kcal Total: -53.78 5.90 -47.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281729.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.322 kcal (2) G-P(sol) polarization free energy of solvation -53.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds