Wall clock time and date at job start Mon Mar 30 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39115 * 119.94137 * 14.31814 * 3 2 1 5 5 C 1.38228 * 119.96389 * 179.97438 * 4 3 2 6 6 C 1.37591 * 120.48641 * 359.97438 * 5 4 3 7 7 C 1.40818 * 120.81654 * 0.03809 * 6 5 4 8 8 C 1.46501 * 128.55345 * 179.97438 * 7 6 5 9 9 C 1.39503 * 123.36555 * 359.97438 * 8 7 6 10 10 H 1.07993 * 120.00403 * 218.33069 * 9 8 7 11 11 C 1.40750 * 119.99798 * 38.32879 * 9 8 7 12 12 N 1.30409 * 119.99755 * 22.69224 * 11 9 8 13 13 Si 1.86796 * 120.00055 * 202.41471 * 11 9 8 14 14 H 1.48494 * 109.47274 * 60.00056 * 13 11 9 15 15 H 1.48496 * 109.46974 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47249 * 300.00022 * 13 11 9 17 17 C 1.38905 * 113.27742 * 180.24153 * 8 7 6 18 18 C 1.41067 * 124.65398 * 179.70939 * 17 8 7 19 19 O 1.21512 * 119.99446 * 5.30122 * 18 17 8 20 20 S 1.75169 * 110.69816 * 359.59799 * 17 8 7 21 21 C 1.39324 * 119.14101 * 359.95768 * 7 6 5 22 22 H 1.07999 * 120.02218 * 0.02562 * 4 3 2 23 23 H 1.07997 * 119.76129 * 179.97438 * 5 4 3 24 24 H 1.07999 * 119.58779 * 180.02562 * 6 5 4 25 25 H 0.97005 * 120.00188 * 5.29238 * 12 11 9 26 26 H 1.07999 * 120.00281 * 185.30192 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2629 -1.1671 -0.2981 5 6 4.6452 -1.1669 -0.2988 6 6 5.3432 -0.0177 -0.0066 7 6 4.6670 1.1790 0.2991 8 6 5.2334 2.4883 0.6327 9 6 6.6046 2.7375 0.6959 10 1 7.0003 3.3893 1.4605 11 6 7.4722 2.1392 -0.2370 12 7 7.0126 1.7332 -1.3879 13 14 9.2836 1.9337 0.1703 14 1 9.4255 1.0904 1.3842 15 1 9.9764 1.2816 -0.9698 16 1 9.8892 3.2665 0.4200 17 6 4.2690 3.4554 0.8857 18 6 4.5471 4.7937 1.2342 19 8 5.6941 5.1949 1.2371 20 16 2.6598 2.7860 0.7094 21 6 3.2738 1.1893 0.3024 22 1 2.7227 -2.0731 -0.5297 23 1 5.1813 -2.0753 -0.5303 24 1 6.4231 -0.0338 -0.0117 25 1 6.0911 1.9120 -1.6325 26 1 3.7407 5.4617 1.4983 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396281774.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:14 Heat of formation + Delta-G solvation = 16.351009 kcal Electronic energy + Delta-G solvation = -15730.538311 eV Core-core repulsion = 13058.020834 eV Total energy + Delta-G solvation = -2672.517478 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.25695 -37.51638 -36.29291 -35.09056 -32.84008 -30.75684 -29.24718 -26.81782 -24.11273 -23.03185 -21.70400 -19.62683 -18.57972 -17.15175 -16.39790 -15.60367 -15.04494 -14.50610 -14.35472 -14.09378 -13.73838 -13.38032 -13.11912 -12.86369 -12.50963 -12.34054 -12.19468 -12.10784 -11.57852 -11.23546 -10.99507 -10.65635 -10.31797 -10.25361 -9.87738 -9.36635 -8.96172 -8.33550 -8.03240 -7.72663 -7.09574 -4.98003 0.97336 1.34725 2.36915 2.43137 2.90283 2.92929 3.01387 3.14113 3.29275 3.38150 3.65592 4.02262 4.14334 4.21609 4.69157 5.11697 5.26640 5.54477 5.67507 5.85822 5.94720 6.22753 6.47949 6.54323 6.75425 6.87887 7.12124 7.22065 7.50209 7.53685 7.73642 8.03710 8.19905 9.06692 9.39352 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.021095 B = 0.009516 C = 0.006779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.019982 B = 2941.661445 C = 4129.253534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.266 3.734 3 C -0.034 4.034 4 C -0.052 4.052 5 C -0.149 4.149 6 C -0.031 4.031 7 C -0.076 4.076 8 C 0.117 3.883 9 C -0.390 4.390 10 H 0.111 0.889 11 C 0.026 3.974 12 N -0.742 5.742 13 Si 1.068 2.932 14 H -0.266 1.266 15 H -0.266 1.266 16 H -0.265 1.265 17 C -0.462 4.462 18 C 0.389 3.611 19 O -0.521 6.521 20 S 0.028 5.972 21 C -0.063 4.063 22 H 0.130 0.870 23 H 0.131 0.869 24 H 0.136 0.864 25 H 0.304 0.696 26 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.883 -6.259 0.533 6.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.048 4.048 3 C -0.045 4.045 4 C -0.074 4.074 5 C -0.171 4.171 6 C -0.052 4.052 7 C -0.085 4.085 8 C 0.108 3.892 9 C -0.418 4.418 10 H 0.128 0.872 11 C -0.201 4.201 12 N -0.363 5.363 13 Si 0.888 3.112 14 H -0.191 1.191 15 H -0.191 1.191 16 H -0.190 1.190 17 C -0.578 4.578 18 C 0.261 3.739 19 O -0.407 6.407 20 S 0.289 5.711 21 C -0.182 4.182 22 H 0.148 0.852 23 H 0.149 0.851 24 H 0.154 0.846 25 H 0.118 0.882 26 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.345 -5.919 0.092 5.930 hybrid contribution -0.091 0.041 0.382 0.395 sum -0.436 -5.878 0.474 5.913 Atomic orbital electron populations 1.81152 1.11957 1.07855 1.10163 1.25723 0.92659 0.93317 0.93105 1.15318 0.83664 0.93843 1.11717 1.20903 0.94425 0.95504 0.96601 1.20746 0.93271 0.98587 1.04457 1.21555 1.00974 0.90481 0.92157 1.19680 0.91056 0.95415 1.02353 1.17636 0.93672 0.87514 0.90363 1.20889 0.90740 1.19595 1.10548 0.87155 1.27738 1.08997 0.90866 0.92531 1.70342 1.20777 1.26938 1.18227 0.83575 0.70996 0.78980 0.77606 1.19122 1.19062 1.18986 1.22567 0.92367 1.00411 1.42437 1.20436 0.90558 0.86809 0.76072 1.90460 1.24767 1.78194 1.47328 1.83175 1.10547 0.99837 1.77589 1.22665 0.96670 0.96845 1.02037 0.85225 0.85150 0.84588 0.88184 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.10 18.54 41.84 0.78 -7.33 15 2 C 0.27 4.72 15.01 -22.47 -0.34 4.38 15 3 C -0.03 -0.60 5.77 -106.40 -0.61 -1.22 15 4 C -0.05 -0.75 9.73 -39.26 -0.38 -1.13 15 5 C -0.15 -2.20 9.99 -39.82 -0.40 -2.60 15 6 C -0.03 -0.57 8.35 -38.84 -0.32 -0.89 15 7 C -0.08 -1.61 5.05 -105.19 -0.53 -2.14 15 8 C 0.12 2.79 5.01 -105.85 -0.53 2.26 15 9 C -0.39 -9.31 7.76 -38.16 -0.30 -9.60 15 10 H 0.11 2.78 6.76 -52.49 -0.35 2.43 15 11 C 0.03 0.55 3.90 -17.21 -0.07 0.49 15 12 N -0.74 -16.39 11.66 55.59 0.65 -15.74 15 13 Si 1.07 18.30 30.00 -169.99 -5.10 13.21 15 14 H -0.27 -4.27 7.11 56.52 0.40 -3.87 15 15 H -0.27 -4.45 7.11 56.52 0.40 -4.05 15 16 H -0.27 -4.59 7.11 56.52 0.40 -4.18 15 17 C -0.46 -10.95 6.24 -38.26 -0.24 -11.19 15 18 C 0.39 9.20 11.41 31.80 0.36 9.56 15 19 O -0.52 -13.76 15.29 5.35 0.08 -13.68 15 20 S 0.03 0.58 22.75 -107.50 -2.45 -1.87 15 21 C -0.06 -1.28 6.31 -37.93 -0.24 -1.52 15 22 H 0.13 1.45 8.06 -52.49 -0.42 1.03 15 23 H 0.13 1.49 8.06 -52.49 -0.42 1.07 15 24 H 0.14 2.51 6.01 -52.49 -0.32 2.19 15 25 H 0.30 7.09 6.90 -40.82 -0.28 6.81 15 26 H 0.05 0.97 8.06 -52.49 -0.42 0.55 15 LS Contribution 257.92 15.07 3.89 3.89 Total: -1.00 -26.39 257.92 -6.76 -33.15 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -1.02 Total: 1.97 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -3.60 Total: -13.60 kcal Atomic # 7 Polarization: -24.49 SS G_CDS: 1.42 Total: -23.07 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.08 Total: -13.68 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.10 Total: 13.21 kcal Atomic # 16 Polarization: 0.58 SS G_CDS: -2.45 Total: -1.87 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -26.39 -6.76 -33.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281774.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.506 kcal (2) G-P(sol) polarization free energy of solvation -26.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds