Wall clock time and date at job start Mon Mar 30 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39115 * 119.94137 * 14.31814 * 3 2 1 5 5 C 1.38228 * 119.96389 * 179.97438 * 4 3 2 6 6 C 1.37591 * 120.48641 * 359.97438 * 5 4 3 7 7 C 1.40818 * 120.81654 * 0.03809 * 6 5 4 8 8 C 1.46501 * 128.55345 * 179.97438 * 7 6 5 9 9 C 1.39503 * 123.36555 * 359.97438 * 8 7 6 10 10 H 1.07993 * 120.00403 * 218.33069 * 9 8 7 11 11 C 1.40750 * 119.99798 * 38.32879 * 9 8 7 12 12 N 1.30409 * 119.99755 * 22.69224 * 11 9 8 13 13 Si 1.86796 * 120.00055 * 202.41471 * 11 9 8 14 14 H 1.48494 * 109.47274 * 60.00056 * 13 11 9 15 15 H 1.48496 * 109.46974 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47249 * 300.00022 * 13 11 9 17 17 C 1.38905 * 113.27742 * 180.24153 * 8 7 6 18 18 C 1.41067 * 124.65398 * 179.70939 * 17 8 7 19 19 O 1.21512 * 119.99446 * 5.30122 * 18 17 8 20 20 S 1.75169 * 110.69816 * 359.59799 * 17 8 7 21 21 C 1.39324 * 119.14101 * 359.95768 * 7 6 5 22 22 H 1.07999 * 120.02218 * 0.02562 * 4 3 2 23 23 H 1.07997 * 119.76129 * 179.97438 * 5 4 3 24 24 H 1.07999 * 119.58779 * 180.02562 * 6 5 4 25 25 H 0.97005 * 120.00188 * 5.29238 * 12 11 9 26 26 H 1.07999 * 120.00281 * 185.30192 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2629 -1.1671 -0.2981 5 6 4.6452 -1.1669 -0.2988 6 6 5.3432 -0.0177 -0.0066 7 6 4.6670 1.1790 0.2991 8 6 5.2334 2.4883 0.6327 9 6 6.6046 2.7375 0.6959 10 1 7.0003 3.3893 1.4605 11 6 7.4722 2.1392 -0.2370 12 7 7.0126 1.7332 -1.3879 13 14 9.2836 1.9337 0.1703 14 1 9.4255 1.0904 1.3842 15 1 9.9764 1.2816 -0.9698 16 1 9.8892 3.2665 0.4200 17 6 4.2690 3.4554 0.8857 18 6 4.5471 4.7937 1.2342 19 8 5.6941 5.1949 1.2371 20 16 2.6598 2.7860 0.7094 21 6 3.2738 1.1893 0.3024 22 1 2.7227 -2.0731 -0.5297 23 1 5.1813 -2.0753 -0.5303 24 1 6.4231 -0.0338 -0.0117 25 1 6.0911 1.9120 -1.6325 26 1 3.7407 5.4617 1.4983 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396281774.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:14 Heat of formation + Delta-G solvation = 2.853156 kcal Electronic energy + Delta-G solvation = -15731.123622 eV Core-core repulsion = 13058.020834 eV Total energy + Delta-G solvation = -2673.102788 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.73846 -39.31444 -37.81943 -36.68045 -34.45258 -32.15389 -30.81098 -28.59166 -25.64123 -24.55376 -23.20678 -21.28720 -20.14114 -18.76317 -17.95411 -17.17676 -16.59929 -15.95866 -15.83880 -15.68230 -15.25829 -14.94643 -14.78892 -14.42879 -14.09625 -13.91714 -13.74584 -13.61577 -13.04299 -12.67720 -12.42867 -12.00348 -11.83610 -11.74976 -11.47700 -10.97633 -10.46734 -10.18412 -9.71725 -9.36109 -8.72013 -6.77834 -0.45708 -0.15185 0.82742 0.88694 1.45597 1.51476 1.60615 1.62199 1.83491 1.91227 2.20352 2.29649 2.68771 2.81784 3.01309 3.70750 3.96027 4.10537 4.27105 4.39594 4.53075 4.81369 5.04152 5.13458 5.22938 5.39934 5.40739 5.63171 5.80458 5.84556 6.26785 6.34421 6.41922 7.22138 7.62237 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.021095 B = 0.009516 C = 0.006779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.019982 B = 2941.661445 C = 4129.253534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.278 3.722 3 C -0.039 4.039 4 C -0.024 4.024 5 C -0.127 4.127 6 C -0.041 4.041 7 C -0.104 4.104 8 C 0.099 3.901 9 C -0.414 4.414 10 H 0.085 0.915 11 C 0.007 3.993 12 N -0.741 5.741 13 Si 1.112 2.888 14 H -0.246 1.246 15 H -0.252 1.252 16 H -0.273 1.273 17 C -0.492 4.492 18 C 0.379 3.621 19 O -0.561 6.561 20 S 0.026 5.974 21 C -0.078 4.078 22 H 0.178 0.822 23 H 0.178 0.822 24 H 0.132 0.868 25 H 0.290 0.710 26 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 -9.456 -0.156 9.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.036 4.036 3 C -0.050 4.050 4 C -0.046 4.046 5 C -0.148 4.148 6 C -0.061 4.061 7 C -0.112 4.112 8 C 0.090 3.910 9 C -0.441 4.441 10 H 0.103 0.897 11 C -0.217 4.217 12 N -0.360 5.360 13 Si 0.926 3.074 14 H -0.170 1.170 15 H -0.176 1.176 16 H -0.198 1.198 17 C -0.607 4.607 18 C 0.255 3.745 19 O -0.451 6.451 20 S 0.286 5.714 21 C -0.196 4.196 22 H 0.195 0.805 23 H 0.195 0.805 24 H 0.150 0.850 25 H 0.103 0.897 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.207 -9.136 -0.601 9.159 hybrid contribution -0.222 0.925 0.557 1.102 sum -0.430 -8.211 -0.044 8.223 Atomic orbital electron populations 1.81175 1.12455 1.08376 1.10804 1.25689 0.92541 0.92817 0.92547 1.15492 0.83505 0.93945 1.12074 1.21480 0.94455 0.95743 0.92937 1.21258 0.93470 0.98692 1.01362 1.21708 1.01101 0.90748 0.92556 1.19629 0.91581 0.95286 1.04744 1.18083 0.93912 0.89069 0.89902 1.20945 0.91681 1.20391 1.11105 0.89692 1.28873 1.11753 0.89614 0.91465 1.70440 1.19821 1.27412 1.18335 0.83077 0.66650 0.78987 0.78638 1.16988 1.17585 1.19781 1.22849 0.94310 1.00778 1.42771 1.20916 0.90633 0.87543 0.75452 1.90426 1.26266 1.78920 1.49459 1.82905 1.08769 1.01038 1.78691 1.22769 0.96614 0.97094 1.03161 0.80459 0.80462 0.85019 0.89709 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.90 18.54 19.00 0.35 -15.55 15 2 C 0.28 9.17 15.01 88.33 1.33 10.49 15 3 C -0.04 -1.26 5.77 -21.02 -0.12 -1.38 15 4 C -0.02 -0.58 9.73 22.48 0.22 -0.36 15 5 C -0.13 -3.11 9.99 22.11 0.22 -2.89 15 6 C -0.04 -1.40 8.35 22.75 0.19 -1.21 15 7 C -0.10 -4.37 5.05 -20.23 -0.10 -4.47 15 8 C 0.10 4.90 5.01 -20.66 -0.10 4.79 15 9 C -0.41 -20.50 7.76 23.19 0.18 -20.32 15 10 H 0.09 4.56 6.76 -2.91 -0.02 4.54 15 11 C 0.01 0.29 3.90 85.52 0.33 0.62 15 12 N -0.74 -32.55 11.66 21.97 0.26 -32.30 15 13 Si 1.11 36.21 30.00 68.60 2.06 38.27 15 14 H -0.25 -7.20 7.11 99.48 0.71 -6.49 15 15 H -0.25 -7.63 7.11 99.48 0.71 -6.92 15 16 H -0.27 -9.17 7.11 99.48 0.71 -8.46 15 17 C -0.49 -24.22 6.24 23.12 0.14 -24.07 15 18 C 0.38 18.76 11.41 68.51 0.78 19.54 15 19 O -0.56 -31.23 15.29 -3.75 -0.06 -31.28 15 20 S 0.03 1.12 22.75 -56.49 -1.29 -0.17 15 21 C -0.08 -3.09 6.31 23.34 0.15 -2.95 15 22 H 0.18 2.66 8.06 -2.91 -0.02 2.64 15 23 H 0.18 2.79 8.06 -2.91 -0.02 2.77 15 24 H 0.13 4.62 6.01 -2.91 -0.02 4.60 15 25 H 0.29 13.69 6.90 -92.70 -0.64 13.05 15 26 H 0.08 3.25 8.06 -2.91 -0.02 3.22 15 Total: -1.00 -60.20 257.92 5.91 -54.29 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.37 Total: 8.94 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 3.22 Total: -22.20 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.61 Total: -47.85 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.06 Total: -31.28 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.06 Total: 38.27 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -1.29 Total: -0.17 kcal Total: -60.20 5.91 -54.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281774.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.145 kcal (2) G-P(sol) polarization free energy of solvation -60.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds