Wall clock time and date at job start Mon Mar 30 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.37825 * 120.34339 * 33.75313 * 3 2 1 5 5 C 1.41807 * 120.76693 * 179.97438 * 4 3 2 6 6 C 1.39966 * 127.68632 * 180.02562 * 5 4 3 7 7 C 1.35472 * 115.41699 * 179.97438 * 6 5 4 8 8 C 1.46158 * 124.72571 * 179.97438 * 7 6 5 9 9 O 1.21380 * 119.99924 * 179.97438 * 8 7 6 10 10 S 1.75408 * 110.55669 * 359.97438 * 7 6 5 11 11 C 1.40711 * 119.69051 * 359.97438 * 5 4 3 12 12 C 1.39162 * 120.80714 * 359.97438 * 11 5 4 13 13 C 1.40194 * 120.49684 * 359.97438 * 12 11 5 14 14 C 1.40408 * 120.53715 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00503 * 154.31156 * 14 13 12 16 16 C 1.40336 * 120.00057 * 334.31060 * 14 13 12 17 17 N 1.30617 * 119.99933 * 343.34530 * 16 14 13 18 18 Si 1.86802 * 120.00338 * 163.34958 * 16 14 13 19 19 H 1.48502 * 109.46748 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47103 * 119.99776 * 18 16 14 21 21 H 1.48503 * 109.46851 * 240.00183 * 18 16 14 22 22 H 1.08004 * 119.62121 * 0.26633 * 4 3 2 23 23 H 1.08002 * 122.29616 * 359.97438 * 6 5 4 24 24 H 1.07995 * 119.99569 * 0.02562 * 8 7 6 25 25 H 1.08001 * 119.74956 * 180.02562 * 12 11 5 26 26 H 0.96998 * 120.00440 * 185.03013 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2648 -0.9880 -0.6609 5 6 4.6828 -0.9958 -0.6672 6 6 5.5307 -1.9213 -1.2866 7 6 6.8564 -1.6889 -1.1329 8 6 7.9182 -2.5237 -1.6913 9 8 9.0815 -2.2346 -1.5001 10 16 7.1214 -0.2466 -0.1704 11 6 5.3883 0.0172 0.0082 12 6 4.7115 1.0287 0.6831 13 6 3.3100 1.0572 0.7019 14 6 2.6263 2.0771 1.3829 15 1 1.6272 2.3533 1.0797 16 6 3.2411 2.7375 2.4577 17 7 4.2879 2.2112 3.0350 18 14 2.5624 4.3693 3.0629 19 1 1.3809 4.7472 2.2465 20 1 2.1603 4.2407 4.4866 21 1 3.6068 5.4173 2.9361 22 1 2.7245 -1.7632 -1.1840 23 1 5.1538 -2.7630 -1.8486 24 1 7.6678 -3.3973 -2.2747 25 1 5.2702 1.7979 1.1955 26 1 4.6689 2.6294 3.8230 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396281782.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:10 Heat of formation + Delta-G solvation = 5.110181 kcal Electronic energy + Delta-G solvation = -15125.791623 eV Core-core repulsion = 12452.786706 eV Total energy + Delta-G solvation = -2673.004917 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.13079 -39.55926 -37.47707 -36.66274 -34.72208 -31.72870 -31.20388 -28.06192 -25.14470 -24.66694 -22.42194 -21.66727 -19.68598 -18.82025 -18.18788 -17.07320 -16.72412 -16.26232 -15.47951 -15.27484 -15.03138 -14.91757 -14.72590 -14.40291 -13.91494 -13.75633 -13.53545 -13.43925 -13.17893 -12.90419 -12.51239 -12.08465 -11.82461 -11.64012 -11.33376 -11.05594 -10.74787 -10.38046 -9.29656 -8.98453 -8.56509 -6.59479 -0.37610 0.23183 0.88949 1.04586 1.34697 1.44439 1.45880 1.50449 1.89336 2.00851 2.07940 2.32634 2.59606 3.28774 3.42661 3.68964 4.11936 4.46393 4.52064 4.69810 4.84041 4.86971 4.95714 5.14665 5.25678 5.50327 5.65851 5.82820 5.85995 6.20438 6.44903 6.55201 6.64297 6.79139 7.92381 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023414 B = 0.006689 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.556979 B = 4184.808448 C = 5302.713676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.305 3.695 3 C -0.157 4.157 4 C 0.047 3.953 5 C -0.242 4.242 6 C 0.031 3.969 7 C -0.359 4.359 8 C 0.421 3.579 9 O -0.528 6.528 10 S 0.017 5.983 11 C -0.059 4.059 12 C -0.186 4.186 13 C 0.139 3.861 14 C -0.427 4.427 15 H 0.089 0.911 16 C 0.039 3.961 17 N -0.770 5.770 18 Si 0.983 3.017 19 H -0.257 1.257 20 H -0.259 1.259 21 H -0.257 1.257 22 H 0.155 0.845 23 H 0.190 0.810 24 H 0.170 0.830 25 H 0.112 0.888 26 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.538 -3.956 -4.200 5.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.006 4.006 3 C -0.163 4.163 4 C 0.023 3.977 5 C -0.247 4.247 6 C 0.000 4.000 7 C -0.475 4.475 8 C 0.284 3.716 9 O -0.407 6.407 10 S 0.279 5.721 11 C -0.175 4.175 12 C -0.214 4.214 13 C 0.131 3.869 14 C -0.454 4.454 15 H 0.107 0.893 16 C -0.185 4.185 17 N -0.391 5.391 18 Si 0.802 3.198 19 H -0.181 1.181 20 H -0.183 1.183 21 H -0.181 1.181 22 H 0.173 0.827 23 H 0.207 0.793 24 H 0.186 0.814 25 H 0.130 0.870 26 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.973 -3.123 -3.511 5.097 hybrid contribution -1.005 0.328 0.309 1.102 sum 0.968 -2.795 -3.202 4.359 Atomic orbital electron populations 1.81076 1.12807 1.10995 1.12905 1.25623 0.92466 0.91401 0.91151 1.16901 0.83478 1.01757 1.14130 1.20971 0.91378 0.94124 0.91179 1.17884 0.93628 1.01164 1.12001 1.20870 0.89897 0.96690 0.92515 1.24842 0.99672 1.05806 1.17138 1.23767 0.84991 0.86596 0.76230 1.90533 1.24193 1.71847 1.54129 1.84233 1.03386 1.27210 1.57238 1.22991 0.95935 0.98851 0.99762 1.20368 0.93190 1.00702 1.07151 1.18401 0.91111 0.89317 0.88113 1.20107 1.01794 1.12686 1.10838 0.89333 1.26965 0.93692 1.01976 0.95825 1.69694 1.16713 1.37771 1.14964 0.85101 0.79669 0.75946 0.79051 1.18066 1.18287 1.18074 0.82713 0.79340 0.81434 0.86992 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -21.02 18.54 19.01 0.35 -20.67 15 2 C 0.30 12.36 14.27 88.33 1.26 13.62 15 3 C -0.16 -6.32 5.90 -19.85 -0.12 -6.44 15 4 C 0.05 1.56 9.72 23.05 0.22 1.78 15 5 C -0.24 -8.52 5.85 -21.37 -0.12 -8.64 15 6 C 0.03 0.84 10.07 22.05 0.22 1.06 15 7 C -0.36 -11.21 6.34 23.69 0.15 -11.06 15 8 C 0.42 10.96 11.59 69.88 0.81 11.77 15 9 O -0.53 -18.62 17.70 -3.34 -0.06 -18.68 15 10 S 0.02 0.65 23.01 -56.49 -1.30 -0.65 15 11 C -0.06 -2.47 6.44 23.10 0.15 -2.32 15 12 C -0.19 -8.57 8.71 22.97 0.20 -8.37 15 13 C 0.14 6.35 5.71 -19.99 -0.11 6.24 15 14 C -0.43 -19.51 8.55 23.31 0.20 -19.31 15 15 H 0.09 4.02 7.39 -2.91 -0.02 4.00 15 16 C 0.04 1.65 5.16 85.38 0.44 2.09 15 17 N -0.77 -34.19 10.96 21.89 0.24 -33.95 15 18 Si 0.98 32.64 29.60 68.60 2.03 34.67 15 19 H -0.26 -8.62 7.11 99.48 0.71 -7.91 15 20 H -0.26 -8.23 7.11 99.48 0.71 -7.52 15 21 H -0.26 -8.18 7.11 99.48 0.71 -7.48 15 22 H 0.16 3.84 8.06 -2.91 -0.02 3.82 15 23 H 0.19 3.04 8.06 -2.91 -0.02 3.01 15 24 H 0.17 2.24 8.06 -2.91 -0.02 2.22 15 25 H 0.11 5.48 6.18 -2.91 -0.02 5.46 15 26 H 0.31 12.02 8.30 -92.71 -0.77 11.25 15 Total: -1.00 -57.80 265.47 5.80 -52.00 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 1.24 Total: 6.86 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 3.30 Total: -19.58 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.59 Total: -54.61 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.06 Total: -18.68 kcal Atomic # 14 Polarization: 32.64 SS G_CDS: 2.03 Total: 34.67 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -1.30 Total: -0.65 kcal Total: -57.80 5.80 -52.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281782.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.111 kcal (2) G-P(sol) polarization free energy of solvation -57.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds