Wall clock time and date at job start Mon Mar 30 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38391 * 119.70826 * 168.23092 * 3 2 1 5 5 C 1.40407 * 120.25769 * 179.97438 * 4 3 2 6 6 C 1.40183 * 120.12305 * 180.31167 * 5 4 3 7 7 H 1.08006 * 119.99725 * 153.95308 * 6 5 4 8 8 C 1.40467 * 120.00334 * 333.95437 * 6 5 4 9 9 N 1.30533 * 120.00101 * 342.79143 * 8 6 5 10 10 Si 1.86804 * 119.99813 * 162.79109 * 8 6 5 11 11 H 1.48497 * 109.47335 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47221 * 119.99939 * 10 8 6 13 13 H 1.48498 * 109.46982 * 240.00059 * 10 8 6 14 14 C 1.47984 * 119.74541 * 0.04031 * 5 4 3 15 15 C 1.39908 * 128.97185 * 179.97438 * 14 5 4 16 16 C 1.32818 * 115.85055 * 180.02562 * 15 14 5 17 17 S 1.75506 * 110.65461 * 359.97438 * 16 15 14 18 18 C 1.39785 * 118.38389 * 359.97438 * 14 5 4 19 19 C 1.40994 * 120.10721 * 359.97438 * 18 14 5 20 20 C 1.46431 * 119.53965 * 179.97438 * 19 18 14 21 21 O 1.21358 * 120.00558 * 180.02562 * 20 19 18 22 22 H 1.07999 * 119.87217 * 0.02562 * 4 3 2 23 23 H 0.96994 * 120.00216 * 180.02562 * 9 8 6 24 24 H 1.07994 * 122.07474 * 359.97438 * 15 14 5 25 25 H 1.08004 * 124.67039 * 180.02562 * 16 15 14 26 26 H 1.08003 * 119.99621 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2533 1.1777 -0.2452 5 6 4.6573 1.1916 -0.2474 6 6 5.3486 2.3868 -0.4896 7 1 6.3458 2.5228 -0.0977 8 6 4.7445 3.4076 -1.2420 9 7 3.7085 3.1412 -1.9902 10 14 5.4236 5.1464 -1.1719 11 1 6.5923 5.1849 -0.2566 12 1 5.8452 5.5684 -2.5317 13 1 4.3728 6.0684 -0.6711 14 6 5.4043 -0.0590 0.0129 15 6 6.7875 -0.2650 0.0559 16 6 7.1802 -1.5073 0.3139 17 16 5.7945 -2.5617 0.5333 18 6 4.6782 -1.2284 0.2562 19 6 3.2686 -1.1997 0.2506 20 6 2.5204 -2.4322 0.5064 21 8 1.3069 -2.4172 0.5032 22 1 2.7060 2.0893 -0.4347 23 1 3.2916 3.8460 -2.5100 24 1 7.4921 0.5361 -0.1112 25 1 8.2104 -1.8247 0.3803 26 1 3.0485 -3.3546 0.6980 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396281797.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:55 Heat of formation + Delta-G solvation = 11.741924 kcal Electronic energy + Delta-G solvation = -15576.902398 eV Core-core repulsion = 12904.185056 eV Total energy + Delta-G solvation = -2672.717343 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.54823 -39.10836 -37.47733 -36.49505 -35.18116 -32.24535 -30.51461 -28.03668 -25.11755 -24.74402 -22.42080 -21.38329 -20.18860 -18.56818 -18.06041 -16.99106 -16.71661 -16.35746 -15.73265 -15.41764 -14.97769 -14.71255 -14.46345 -14.37617 -13.99672 -13.88175 -13.58789 -13.23078 -13.04368 -12.94436 -12.41631 -12.33800 -11.86122 -11.71509 -11.47229 -11.27615 -10.41463 -10.17558 -9.28670 -9.04476 -8.63362 -6.62165 -0.37327 0.25197 0.84532 1.14218 1.36192 1.41338 1.56087 1.61070 1.86437 1.88534 2.08752 2.24778 2.66116 3.17334 3.43203 3.65320 4.22197 4.42215 4.67588 4.78187 4.85858 4.88800 4.99629 5.16751 5.36802 5.61391 5.71014 5.75409 5.84484 6.17497 6.36370 6.50261 6.64479 6.78223 7.81462 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.017605 B = 0.009169 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.108252 B = 3053.104809 C = 4560.932349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.285 3.715 3 C 0.059 3.941 4 C -0.159 4.159 5 C 0.129 3.871 6 C -0.376 4.376 7 H 0.122 0.878 8 C 0.029 3.971 9 N -0.760 5.760 10 Si 0.997 3.003 11 H -0.239 1.239 12 H -0.260 1.260 13 H -0.266 1.266 14 C -0.196 4.196 15 C -0.084 4.084 16 C -0.247 4.247 17 S 0.080 5.920 18 C -0.048 4.048 19 C -0.310 4.310 20 C 0.376 3.624 21 O -0.542 6.542 22 H 0.121 0.879 23 H 0.310 0.690 24 H 0.149 0.851 25 H 0.190 0.810 26 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.528 0.748 1.325 11.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.028 4.028 3 C 0.053 3.947 4 C -0.183 4.183 5 C 0.123 3.877 6 C -0.400 4.400 7 H 0.139 0.861 8 C -0.196 4.196 9 N -0.380 5.380 10 Si 0.815 3.185 11 H -0.162 1.162 12 H -0.185 1.185 13 H -0.190 1.190 14 C -0.204 4.204 15 C -0.113 4.113 16 C -0.380 4.380 17 S 0.342 5.658 18 C -0.165 4.165 19 C -0.321 4.321 20 C 0.246 3.754 21 O -0.425 6.425 22 H 0.139 0.861 23 H 0.122 0.878 24 H 0.166 0.834 25 H 0.207 0.793 26 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.950 -0.739 1.459 9.098 hybrid contribution 0.305 2.036 -0.558 2.133 sum 9.254 1.297 0.901 9.388 Atomic orbital electron populations 1.80905 1.13163 1.11065 1.09879 1.26055 0.93293 0.90790 0.92697 1.15816 0.82677 0.95137 1.01073 1.20978 0.94357 0.95533 1.07457 1.18653 0.90666 0.91162 0.87230 1.20572 1.02828 0.96114 1.20441 0.86050 1.27358 0.93846 1.06372 0.92026 1.69692 1.15546 1.38618 1.14105 0.84881 0.79991 0.73446 0.80207 1.16183 1.18482 1.19035 1.19427 0.93358 0.92595 1.14982 1.19822 0.93673 0.97742 1.00085 1.25220 1.02242 0.95923 1.14585 1.83440 0.96113 1.10681 1.75601 1.22572 0.95551 0.97429 1.00916 1.18917 0.91167 0.94735 1.27252 1.23752 0.88389 0.92208 0.71058 1.90477 1.18770 1.88685 1.44567 0.86105 0.87758 0.83385 0.79319 0.87118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -24.17 18.34 19.00 0.35 -23.82 15 2 C 0.28 14.19 12.61 88.33 1.11 15.31 15 3 C 0.06 2.79 5.74 -21.26 -0.12 2.67 15 4 C -0.16 -7.40 8.30 22.83 0.19 -7.21 15 5 C 0.13 5.65 5.74 -19.69 -0.11 5.54 15 6 C -0.38 -14.83 8.79 23.29 0.20 -14.62 15 7 H 0.12 4.21 7.49 -2.91 -0.02 4.18 15 8 C 0.03 1.09 5.13 85.43 0.44 1.53 15 9 N -0.76 -31.23 10.99 21.91 0.24 -30.99 15 10 Si 1.00 27.46 29.60 68.60 2.03 29.49 15 11 H -0.24 -6.15 7.11 99.48 0.71 -5.44 15 12 H -0.26 -6.99 7.11 99.48 0.71 -6.28 15 13 H -0.27 -7.44 7.11 99.48 0.71 -6.73 15 14 C -0.20 -7.90 6.02 -19.91 -0.12 -8.02 15 15 C -0.08 -2.77 9.73 21.50 0.21 -2.56 15 16 C -0.25 -6.91 11.12 66.64 0.74 -6.17 15 17 S 0.08 2.43 22.67 -56.49 -1.28 1.15 15 18 C -0.05 -1.92 6.35 23.32 0.15 -1.77 15 19 C -0.31 -13.66 5.92 -19.73 -0.12 -13.77 15 20 C 0.38 15.67 11.23 69.96 0.79 16.46 15 21 O -0.54 -26.51 14.94 -3.27 -0.05 -26.56 15 22 H 0.12 5.76 6.19 -2.91 -0.02 5.74 15 23 H 0.31 11.27 8.29 -92.71 -0.77 10.50 15 24 H 0.15 4.23 7.68 -2.91 -0.02 4.21 15 25 H 0.19 3.84 8.06 -2.91 -0.02 3.81 15 26 H 0.11 3.72 7.63 -2.91 -0.02 3.69 15 Total: -1.00 -55.59 259.85 5.89 -49.70 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 1.24 Total: 13.67 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 3.36 Total: -12.63 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.59 Total: -54.81 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.05 Total: -26.56 kcal Atomic # 14 Polarization: 27.46 SS G_CDS: 2.03 Total: 29.49 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.28 Total: 1.15 kcal Total: -55.59 5.89 -49.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281797.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.442 kcal (2) G-P(sol) polarization free energy of solvation -55.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds