Wall clock time and date at job start Mon Mar 30 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.38803 * 120.30780 * 331.25664 * 3 2 1 5 5 C 1.39269 * 120.75641 * 180.31719 * 4 3 2 6 6 C 1.46666 * 119.00708 * 179.61620 * 5 4 3 7 7 O 1.21341 * 120.00235 * 0.02562 * 6 5 4 8 8 C 1.41461 * 121.98497 * 359.63546 * 5 4 3 9 9 S 1.76203 * 130.18557 * 179.97438 * 8 5 4 10 10 C 1.75481 * 91.52904 * 180.02562 * 9 8 5 11 11 C 1.32722 * 110.65513 * 0.02562 * 10 9 8 12 12 C 1.39639 * 120.56082 * 0.02562 * 8 5 4 13 13 C 1.46402 * 120.30727 * 150.90241 * 3 2 1 14 14 C 1.39646 * 120.52770 * 359.97438 * 13 3 2 15 15 H 1.08001 * 119.99721 * 38.62983 * 14 13 3 16 16 C 1.40655 * 120.00225 * 218.63213 * 14 13 3 17 17 N 1.30444 * 120.00001 * 24.28323 * 16 14 13 18 18 Si 1.86798 * 119.99940 * 204.28519 * 16 14 13 19 19 H 1.48503 * 109.47132 * 179.97438 * 18 16 14 20 20 H 1.48493 * 109.47256 * 299.99931 * 18 16 14 21 21 H 1.48501 * 109.47210 * 59.99942 * 18 16 14 22 22 H 1.07999 * 119.62505 * 359.97438 * 4 3 2 23 23 H 1.08002 * 119.99848 * 180.02562 * 6 5 4 24 24 H 1.07999 * 124.67324 * 180.02562 * 10 9 8 25 25 H 1.08006 * 122.09420 * 180.02562 * 11 10 9 26 26 H 0.96992 * 119.99752 * 5.55212 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2689 -1.0497 0.5763 5 6 4.6615 -1.0555 0.5873 6 6 5.3631 -2.1806 1.2141 7 8 4.7306 -3.0883 1.7125 8 6 5.4197 -0.0086 0.0126 9 16 7.1655 0.2044 -0.0947 10 6 6.9747 1.7305 -0.9396 11 6 5.6892 2.0166 -1.1048 12 6 4.7852 1.0786 -0.5918 13 6 3.3062 1.1054 -0.6146 14 6 2.6252 2.1703 -1.2081 15 1 1.7236 2.5547 -0.7544 16 6 3.1134 2.7424 -2.3967 17 7 3.8730 2.0425 -3.1934 18 14 2.6740 4.5044 -2.8344 19 1 3.3093 4.8666 -4.1269 20 1 1.1994 4.6317 -2.9543 21 1 3.1646 5.4160 -1.7697 22 1 2.7281 -1.8693 1.0261 23 1 6.4428 -2.2012 1.2321 24 1 7.7908 2.3515 -1.2784 25 1 5.3612 2.9162 -1.6045 26 1 4.0355 1.1044 -3.0083 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396281849.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:58 Heat of formation + Delta-G solvation = 16.164480 kcal Electronic energy + Delta-G solvation = -15705.907422 eV Core-core repulsion = 13033.381856 eV Total energy + Delta-G solvation = -2672.525566 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.94426 -37.74219 -35.80777 -34.66436 -33.92210 -30.55750 -28.82213 -26.35260 -23.47888 -23.20424 -21.71101 -19.40707 -18.88213 -17.33393 -16.52071 -15.72919 -14.80017 -14.51207 -14.46029 -14.13057 -13.76480 -13.37040 -13.13971 -12.82559 -12.48678 -12.24644 -11.89394 -11.75834 -11.61183 -11.34791 -11.00345 -10.79444 -10.52108 -10.15692 -10.10195 -9.54404 -9.00783 -8.70454 -8.15143 -7.83832 -7.18671 -5.31857 1.46461 1.51425 2.17416 2.41249 2.61606 2.79793 2.85455 3.00858 3.42943 3.47501 3.63103 3.90415 4.04709 4.84160 4.87815 5.18916 5.53128 5.78052 5.82380 6.05774 6.23380 6.35978 6.57156 6.66574 6.87176 6.97468 7.02511 7.11960 7.23315 7.38615 7.75411 7.90037 8.21518 8.52835 9.17545 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.010066 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.814690 B = 2781.090985 C = 4176.905976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.298 3.702 3 C -0.197 4.197 4 C 0.077 3.923 5 C -0.313 4.313 6 C 0.385 3.615 7 O -0.508 6.508 8 C -0.022 4.022 9 S 0.043 5.957 10 C -0.259 4.259 11 C -0.061 4.061 12 C -0.170 4.170 13 C 0.164 3.836 14 C -0.425 4.425 15 H 0.102 0.898 16 C 0.028 3.972 17 N -0.718 5.718 18 Si 1.064 2.936 19 H -0.263 1.263 20 H -0.266 1.266 21 H -0.263 1.263 22 H 0.120 0.880 23 H 0.075 0.925 24 H 0.154 0.846 25 H 0.138 0.862 26 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.467 3.636 -0.189 7.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.013 4.013 3 C -0.205 4.205 4 C 0.053 3.947 5 C -0.321 4.321 6 C 0.251 3.749 7 O -0.389 6.389 8 C -0.140 4.140 9 S 0.305 5.695 10 C -0.392 4.392 11 C -0.090 4.090 12 C -0.178 4.178 13 C 0.156 3.844 14 C -0.449 4.449 15 H 0.120 0.880 16 C -0.202 4.202 17 N -0.336 5.336 18 Si 0.883 3.117 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.188 1.188 22 H 0.138 0.862 23 H 0.091 0.909 24 H 0.171 0.829 25 H 0.155 0.845 26 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.036 3.543 -0.678 7.032 hybrid contribution -0.787 -0.290 0.550 1.003 sum 5.249 3.253 -0.129 6.177 Atomic orbital electron populations 1.81061 1.12392 1.10261 1.13331 1.25483 0.92372 0.91938 0.91511 1.16407 0.83649 0.99525 1.20873 1.20609 0.92299 0.93807 0.87952 1.18779 0.92876 1.00582 1.19837 1.23381 0.93649 0.83338 0.74548 1.90440 1.71709 1.37142 1.39600 1.22673 0.94809 0.97102 0.99386 1.83626 1.03450 1.21343 1.61073 1.24766 0.99924 1.01671 1.12840 1.19923 0.91377 0.99695 0.97996 1.18944 0.92941 0.96515 1.09371 1.19286 0.88417 0.88803 0.87928 1.21141 1.09019 1.08775 1.05982 0.87994 1.27659 0.91962 1.07823 0.92796 1.70312 1.18207 1.12257 1.32809 0.83622 0.78450 0.71117 0.78474 1.18672 1.19036 1.18770 0.86178 0.90923 0.82883 0.84465 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.29 18.54 41.83 0.78 -10.51 15 2 C 0.30 6.61 14.43 -22.48 -0.32 6.29 15 3 C -0.20 -4.27 5.92 -104.48 -0.62 -4.89 15 4 C 0.08 1.59 9.18 -38.99 -0.36 1.23 15 5 C -0.31 -6.26 5.88 -104.89 -0.62 -6.88 15 6 C 0.38 7.16 11.23 34.13 0.38 7.54 15 7 O -0.51 -10.73 17.02 5.50 0.09 -10.64 15 8 C -0.02 -0.44 6.35 -37.83 -0.24 -0.68 15 9 S 0.04 0.71 22.58 -107.50 -2.43 -1.72 15 10 C -0.26 -4.37 11.11 28.85 0.32 -4.05 15 11 C -0.06 -1.17 8.27 -40.80 -0.34 -1.50 15 12 C -0.17 -3.53 5.06 -104.74 -0.53 -4.06 15 13 C 0.16 3.58 5.25 -102.11 -0.54 3.05 15 14 C -0.43 -9.08 8.18 -38.14 -0.31 -9.39 15 15 H 0.10 2.18 7.75 -52.49 -0.41 1.77 15 16 C 0.03 0.55 3.64 -17.23 -0.06 0.49 15 17 N -0.72 -15.02 11.66 55.59 0.65 -14.38 15 18 Si 1.06 16.95 30.00 -169.99 -5.10 11.85 15 19 H -0.26 -4.16 7.11 56.52 0.40 -3.76 15 20 H -0.27 -4.18 7.11 56.52 0.40 -3.78 15 21 H -0.26 -4.00 7.11 56.52 0.40 -3.60 15 22 H 0.12 2.39 7.51 -52.49 -0.39 2.00 15 23 H 0.07 1.16 7.56 -52.49 -0.40 0.76 15 24 H 0.15 2.16 8.06 -52.49 -0.42 1.74 15 25 H 0.14 2.63 6.08 -52.48 -0.32 2.31 15 26 H 0.31 6.85 7.09 -40.82 -0.29 6.56 15 LS Contribution 259.68 15.07 3.91 3.91 Total: -1.00 -23.97 259.68 -6.35 -30.32 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -1.02 Total: 4.01 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -3.23 Total: -12.85 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 1.42 Total: -24.89 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.10 Total: 11.85 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.43 Total: -1.72 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -23.97 -6.35 -30.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281849.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.489 kcal (2) G-P(sol) polarization free energy of solvation -23.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds