Wall clock time and date at job start Mon Mar 30 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39008 * 119.73356 * 78.01350 * 3 2 1 5 5 C 1.41465 * 120.82642 * 180.02562 * 4 3 2 6 6 C 1.40408 * 128.50396 * 180.02562 * 5 4 3 7 7 C 1.34151 * 115.50715 * 180.02562 * 6 5 4 8 8 C 1.41796 * 124.68602 * 179.97438 * 7 6 5 9 9 O 1.21385 * 120.00376 * 0.02562 * 8 7 6 10 10 S 1.75469 * 110.62290 * 0.02562 * 7 6 5 11 11 C 1.40015 * 118.90690 * 0.02562 * 5 4 3 12 12 C 1.42389 * 119.99070 * 359.97438 * 11 5 4 13 13 C 1.40961 * 120.00281 * 180.27724 * 12 11 5 14 14 H 1.07999 * 119.99742 * 334.09752 * 13 12 11 15 15 C 1.39953 * 119.99757 * 154.09133 * 13 12 11 16 16 N 1.30849 * 119.99948 * 342.59652 * 15 13 12 17 17 Si 1.86801 * 119.99705 * 162.59316 * 15 13 12 18 18 H 1.48501 * 109.47102 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46851 * 120.00504 * 17 15 13 20 20 H 1.48503 * 109.46882 * 240.00063 * 17 15 13 21 21 C 1.39482 * 119.73819 * 258.02763 * 3 2 1 22 22 H 1.07999 * 119.58944 * 0.03990 * 4 3 2 23 23 H 1.07992 * 122.24389 * 359.97438 * 6 5 4 24 24 H 1.07998 * 119.99654 * 180.02562 * 8 7 6 25 25 H 0.96998 * 119.99887 * 179.97438 * 16 15 13 26 26 H 1.07997 * 120.12361 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2576 -0.2497 -1.1807 5 6 4.6720 -0.2552 -1.2070 6 6 5.5251 -0.4861 -2.2980 7 6 6.8377 -0.4292 -2.0271 8 6 7.8679 -0.6315 -2.9802 9 8 7.5866 -0.8756 -4.1355 10 16 7.1035 -0.0714 -0.3300 11 6 5.3719 -0.0042 -0.0207 12 6 4.6596 0.2516 1.1855 13 6 5.3641 0.5102 2.3787 14 1 6.3642 0.1243 2.5098 15 6 4.7674 1.2670 3.3936 16 7 3.7254 2.0124 3.1273 17 14 5.4584 1.2129 5.1282 18 1 6.6301 0.3014 5.1660 19 1 5.8797 2.5773 5.5359 20 1 4.4149 0.7175 6.0615 21 6 3.2598 0.2522 1.1848 22 1 2.7066 -0.4422 -2.0895 23 1 5.1497 -0.6961 -3.2886 24 1 8.9029 -0.5684 -2.6782 25 1 3.3116 2.5367 3.8307 26 1 2.7175 0.4453 2.0985 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396281941.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:26 Heat of formation + Delta-G solvation = 23.299717 kcal Electronic energy + Delta-G solvation = -15201.079359 eV Core-core repulsion = 12528.863200 eV Total energy + Delta-G solvation = -2672.216159 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.23739 -38.34513 -36.03602 -35.09022 -33.33435 -30.60260 -29.31303 -25.90124 -24.92742 -23.27583 -21.10406 -19.98503 -18.18081 -16.84962 -16.70488 -15.88412 -15.53272 -14.99273 -14.19648 -13.99670 -13.77171 -13.47855 -13.28860 -12.94910 -12.41388 -12.25249 -12.07223 -11.87784 -11.42833 -11.28743 -10.91608 -10.71437 -10.40775 -10.15967 -9.89288 -9.72788 -9.57360 -8.69771 -7.77660 -7.25101 -7.09350 -4.78077 0.74564 1.73467 2.18617 2.47531 2.73341 2.81247 2.88836 2.93828 3.32953 3.34963 3.63669 3.67906 4.33466 4.55544 4.77101 5.07086 5.52707 5.68202 5.84510 6.04023 6.19421 6.45674 6.61164 6.72277 6.82920 6.99864 7.26024 7.34716 7.55789 7.60581 7.95895 8.16116 8.29048 8.32129 9.72284 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.008298 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.040376 B = 3373.585959 C = 4974.609908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.281 3.719 3 C -0.002 4.002 4 C -0.158 4.158 5 C -0.070 4.070 6 C -0.015 4.015 7 C -0.313 4.313 8 C 0.413 3.587 9 O -0.476 6.476 10 S 0.109 5.891 11 C -0.166 4.166 12 C 0.135 3.865 13 C -0.441 4.441 14 H 0.089 0.911 15 C 0.075 3.925 16 N -0.773 5.773 17 Si 0.914 3.086 18 H -0.255 1.255 19 H -0.270 1.270 20 H -0.268 1.268 21 C -0.116 4.116 22 H 0.109 0.891 23 H 0.139 0.861 24 H 0.097 0.903 25 H 0.290 0.710 26 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.457 -1.780 -0.890 6.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.033 4.033 3 C -0.007 4.007 4 C -0.183 4.183 5 C -0.077 4.077 6 C -0.051 4.051 7 C -0.429 4.429 8 C 0.274 3.726 9 O -0.353 6.353 10 S 0.377 5.623 11 C -0.283 4.283 12 C 0.129 3.871 13 C -0.469 4.469 14 H 0.107 0.893 15 C -0.146 4.146 16 N -0.395 5.395 17 Si 0.737 3.263 18 H -0.179 1.179 19 H -0.195 1.195 20 H -0.192 1.192 21 C -0.143 4.143 22 H 0.127 0.873 23 H 0.156 0.844 24 H 0.113 0.887 25 H 0.102 0.898 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.805 -1.541 -0.527 6.029 hybrid contribution -0.661 0.036 0.108 0.670 sum 5.145 -1.505 -0.419 5.377 Atomic orbital electron populations 1.81092 1.12536 1.10989 1.09391 1.26146 0.93083 0.92141 0.91971 1.15694 0.83011 1.06151 0.95820 1.20146 0.90989 1.10969 0.96195 1.17751 0.93697 1.04530 0.91699 1.20501 0.91616 0.93804 0.99150 1.23536 0.99077 1.18887 1.01377 1.21812 0.93363 0.71132 0.86320 1.90534 1.87467 1.36245 1.21011 1.83588 1.05210 1.73961 0.99572 1.23216 0.94566 1.13244 0.97286 1.16794 0.90969 0.89756 0.89589 1.19618 1.01958 1.27177 0.98130 0.89282 1.25995 0.94196 0.92755 1.01676 1.69768 1.17329 1.16909 1.35532 0.86124 0.80333 0.79483 0.80312 1.17866 1.19493 1.19231 1.21221 0.93325 1.03936 0.95841 0.87316 0.84379 0.88716 0.89848 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.71 18.54 41.84 0.78 -8.94 15 2 C 0.28 5.69 15.29 -22.47 -0.34 5.34 15 3 C 0.00 -0.04 5.71 -107.22 -0.61 -0.66 15 4 C -0.16 -3.03 9.76 -38.07 -0.37 -3.40 15 5 C -0.07 -1.37 5.85 -107.19 -0.63 -2.00 15 6 C -0.02 -0.27 9.74 -40.20 -0.39 -0.66 15 7 C -0.31 -5.13 6.14 -39.66 -0.24 -5.37 15 8 C 0.41 5.93 11.46 32.09 0.37 6.30 15 9 O -0.48 -8.17 17.42 5.47 0.10 -8.07 15 10 S 0.11 1.88 22.80 -107.50 -2.45 -0.57 15 11 C -0.17 -3.43 6.39 -37.32 -0.24 -3.67 15 12 C 0.14 3.02 5.58 -106.61 -0.60 2.42 15 13 C -0.44 -9.75 8.81 -37.91 -0.33 -10.09 15 14 H 0.09 1.89 7.75 -52.49 -0.41 1.48 15 15 C 0.08 1.60 5.12 -17.33 -0.09 1.51 15 16 N -0.77 -17.16 10.99 55.55 0.61 -16.55 15 17 Si 0.91 16.06 29.59 -169.99 -5.03 11.03 15 18 H -0.26 -4.44 7.11 56.52 0.40 -4.04 15 19 H -0.27 -4.73 7.11 56.52 0.40 -4.32 15 20 H -0.27 -4.69 7.11 56.52 0.40 -4.29 15 21 C -0.12 -2.56 8.34 -38.46 -0.32 -2.88 15 22 H 0.11 1.85 8.06 -52.49 -0.42 1.43 15 23 H 0.14 2.22 7.90 -52.49 -0.41 1.80 15 24 H 0.10 1.00 8.06 -52.49 -0.42 0.58 15 25 H 0.29 5.85 8.30 -40.82 -0.34 5.51 15 26 H 0.14 3.10 6.19 -52.49 -0.33 2.77 15 LS Contribution 265.11 15.07 4.00 4.00 Total: -1.00 -24.39 265.11 -6.93 -31.32 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -1.13 Total: 0.93 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -3.80 Total: -13.15 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 1.39 Total: -25.49 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.10 Total: -8.07 kcal Atomic # 14 Polarization: 16.06 SS G_CDS: -5.03 Total: 11.03 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.45 Total: -0.57 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -24.39 -6.93 -31.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281941.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.622 kcal (2) G-P(sol) polarization free energy of solvation -24.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds