Wall clock time and date at job start Mon Mar 30 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39008 * 119.73356 * 78.01350 * 3 2 1 5 5 C 1.41465 * 120.82642 * 180.02562 * 4 3 2 6 6 C 1.40408 * 128.50396 * 180.02562 * 5 4 3 7 7 C 1.34151 * 115.50715 * 180.02562 * 6 5 4 8 8 C 1.41796 * 124.68602 * 179.97438 * 7 6 5 9 9 O 1.21385 * 120.00376 * 0.02562 * 8 7 6 10 10 S 1.75469 * 110.62290 * 0.02562 * 7 6 5 11 11 C 1.40015 * 118.90690 * 0.02562 * 5 4 3 12 12 C 1.42389 * 119.99070 * 359.97438 * 11 5 4 13 13 C 1.40961 * 120.00281 * 180.27724 * 12 11 5 14 14 H 1.07999 * 119.99742 * 334.09752 * 13 12 11 15 15 C 1.39953 * 119.99757 * 154.09133 * 13 12 11 16 16 N 1.30849 * 119.99948 * 342.59652 * 15 13 12 17 17 Si 1.86801 * 119.99705 * 162.59316 * 15 13 12 18 18 H 1.48501 * 109.47102 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46851 * 120.00504 * 17 15 13 20 20 H 1.48503 * 109.46882 * 240.00063 * 17 15 13 21 21 C 1.39482 * 119.73819 * 258.02763 * 3 2 1 22 22 H 1.07999 * 119.58944 * 0.03990 * 4 3 2 23 23 H 1.07992 * 122.24389 * 359.97438 * 6 5 4 24 24 H 1.07998 * 119.99654 * 180.02562 * 8 7 6 25 25 H 0.96998 * 119.99887 * 179.97438 * 16 15 13 26 26 H 1.07997 * 120.12361 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2576 -0.2497 -1.1807 5 6 4.6720 -0.2552 -1.2070 6 6 5.5251 -0.4861 -2.2980 7 6 6.8377 -0.4292 -2.0271 8 6 7.8679 -0.6315 -2.9802 9 8 7.5866 -0.8756 -4.1355 10 16 7.1035 -0.0714 -0.3300 11 6 5.3719 -0.0042 -0.0207 12 6 4.6596 0.2516 1.1855 13 6 5.3641 0.5102 2.3787 14 1 6.3642 0.1243 2.5098 15 6 4.7674 1.2670 3.3936 16 7 3.7254 2.0124 3.1273 17 14 5.4584 1.2129 5.1282 18 1 6.6301 0.3014 5.1660 19 1 5.8797 2.5773 5.5359 20 1 4.4149 0.7175 6.0615 21 6 3.2598 0.2522 1.1848 22 1 2.7066 -0.4422 -2.0895 23 1 5.1497 -0.6961 -3.2886 24 1 8.9029 -0.5684 -2.6782 25 1 3.3116 2.5367 3.8307 26 1 2.7175 0.4453 2.0985 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396281941.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:26 Heat of formation + Delta-G solvation = 12.535080 kcal Electronic energy + Delta-G solvation = -15201.546149 eV Core-core repulsion = 12528.863200 eV Total energy + Delta-G solvation = -2672.682949 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.60894 -39.77976 -37.64889 -36.61909 -34.88060 -32.20670 -30.76468 -27.50801 -26.29225 -24.84880 -22.63297 -21.35803 -19.66220 -18.34781 -18.22208 -17.29266 -16.97966 -16.43480 -15.49835 -15.43635 -15.24492 -15.00575 -14.88758 -14.43944 -13.95196 -13.80800 -13.71055 -13.37900 -12.86762 -12.81804 -12.38628 -12.23029 -11.88236 -11.66277 -11.38144 -11.13468 -10.95447 -10.23249 -9.31080 -8.81620 -8.57964 -6.42435 -0.62393 0.12350 0.78377 1.04262 1.26140 1.42723 1.45802 1.58019 1.68638 1.92043 2.16103 2.18518 2.73910 3.05825 3.44583 3.53054 4.24085 4.29557 4.44632 4.56967 4.68709 5.00852 5.08050 5.15325 5.26502 5.48089 5.67202 5.74752 5.95911 6.31319 6.43259 6.52515 6.68080 6.70391 8.17636 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.008298 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.040376 B = 3373.585959 C = 4974.609908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.291 3.709 3 C -0.006 4.006 4 C -0.150 4.150 5 C -0.076 4.076 6 C -0.033 4.033 7 C -0.302 4.302 8 C 0.422 3.578 9 O -0.499 6.499 10 S 0.148 5.852 11 C -0.194 4.194 12 C 0.116 3.884 13 C -0.467 4.467 14 H 0.092 0.908 15 C 0.042 3.958 16 N -0.806 5.806 17 Si 0.978 3.022 18 H -0.251 1.251 19 H -0.267 1.267 20 H -0.267 1.267 21 C -0.141 4.141 22 H 0.132 0.868 23 H 0.153 0.847 24 H 0.148 0.852 25 H 0.295 0.705 26 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.307 -2.155 -1.564 8.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.023 4.023 3 C -0.011 4.011 4 C -0.175 4.175 5 C -0.083 4.083 6 C -0.067 4.067 7 C -0.418 4.418 8 C 0.283 3.717 9 O -0.377 6.377 10 S 0.416 5.584 11 C -0.312 4.312 12 C 0.110 3.890 13 C -0.495 4.495 14 H 0.110 0.890 15 C -0.176 4.176 16 N -0.430 5.430 17 Si 0.798 3.202 18 H -0.174 1.174 19 H -0.191 1.191 20 H -0.192 1.192 21 C -0.168 4.168 22 H 0.150 0.850 23 H 0.171 0.829 24 H 0.165 0.835 25 H 0.106 0.894 26 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.659 -1.920 -1.209 7.988 hybrid contribution -1.155 0.122 0.166 1.173 sum 6.504 -1.798 -1.042 6.828 Atomic orbital electron populations 1.81089 1.12770 1.11546 1.09877 1.26099 0.92949 0.91704 0.91522 1.15713 0.82942 1.06489 0.95939 1.20444 0.91356 1.09258 0.96458 1.18020 0.94007 1.04136 0.92130 1.20594 0.91901 0.95016 0.99238 1.23983 0.99494 1.16854 1.01493 1.22433 0.94620 0.69493 0.85107 1.90545 1.87962 1.37114 1.22059 1.83385 1.02288 1.72952 0.99728 1.23558 0.97100 1.13270 0.97225 1.17020 0.91292 0.90169 0.90527 1.19811 1.02390 1.28295 0.98985 0.89039 1.26717 0.94237 0.91951 1.04704 1.69821 1.18634 1.17861 1.36719 0.85189 0.79629 0.79453 0.75918 1.17363 1.19141 1.19227 1.21084 0.93668 1.06184 0.95858 0.84978 0.82926 0.83547 0.89409 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -19.96 18.54 19.00 0.35 -19.61 15 2 C 0.29 11.87 15.29 88.33 1.35 13.22 15 3 C -0.01 -0.25 5.71 -21.55 -0.12 -0.37 15 4 C -0.15 -5.67 9.76 23.25 0.23 -5.44 15 5 C -0.08 -2.88 5.85 -21.52 -0.13 -3.00 15 6 C -0.03 -1.08 9.74 21.87 0.21 -0.86 15 7 C -0.30 -9.00 6.14 22.22 0.14 -8.86 15 8 C 0.42 10.43 11.46 68.70 0.79 11.22 15 9 O -0.50 -15.49 17.42 -3.35 -0.06 -15.55 15 10 S 0.15 4.79 22.80 -56.49 -1.29 3.50 15 11 C -0.19 -7.93 6.39 23.73 0.15 -7.78 15 12 C 0.12 5.27 5.58 -21.15 -0.12 5.15 15 13 C -0.47 -20.96 8.81 23.35 0.21 -20.75 15 14 H 0.09 3.90 7.75 -2.91 -0.02 3.87 15 15 C 0.04 1.82 5.12 85.25 0.44 2.26 15 16 N -0.81 -36.88 10.99 21.83 0.24 -36.64 15 17 Si 0.98 32.93 29.59 68.60 2.03 34.96 15 18 H -0.25 -8.14 7.11 99.48 0.71 -7.43 15 19 H -0.27 -8.76 7.11 99.48 0.71 -8.05 15 20 H -0.27 -8.92 7.11 99.48 0.71 -8.21 15 21 C -0.14 -6.42 8.34 22.99 0.19 -6.22 15 22 H 0.13 4.28 8.06 -2.91 -0.02 4.25 15 23 H 0.15 4.53 7.90 -2.91 -0.02 4.51 15 24 H 0.15 2.27 8.06 -2.91 -0.02 2.24 15 25 H 0.29 12.24 8.30 -92.71 -0.77 11.47 15 26 H 0.12 5.69 6.19 -2.91 -0.02 5.68 15 Total: -1.00 -52.30 265.11 5.85 -46.45 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 1.24 Total: 8.34 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 3.33 Total: -21.46 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.59 Total: -56.24 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.06 Total: -15.55 kcal Atomic # 14 Polarization: 32.93 SS G_CDS: 2.03 Total: 34.96 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.29 Total: 3.50 kcal Total: -52.30 5.85 -46.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396281941.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.990 kcal (2) G-P(sol) polarization free energy of solvation -52.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds