Wall clock time and date at job start Mon Mar 30 2020 06:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.33912 * 122.96578 * 180.18523 * 3 2 1 5 5 S 1.70019 * 112.19221 * 179.97438 * 4 3 2 6 6 C 1.75809 * 92.94639 * 0.02562 * 5 4 3 7 7 C 1.39369 * 109.91160 * 0.02562 * 6 5 4 8 8 C 1.41100 * 119.98373 * 180.02562 * 7 6 5 9 9 C 1.37150 * 121.84487 * 359.97438 * 8 7 6 10 10 C 1.39955 * 120.47260 * 0.04898 * 9 8 7 11 11 C 1.46291 * 120.55502 * 179.97438 * 10 9 8 12 12 O 1.21385 * 119.99718 * 354.86743 * 11 10 9 13 13 C 1.42185 * 130.33358 * 180.02562 * 6 5 4 14 14 C 1.40181 * 120.47001 * 359.70008 * 13 6 5 15 15 H 1.07999 * 119.99968 * 136.94603 * 14 13 6 16 16 C 1.40482 * 120.00136 * 316.94424 * 14 13 6 17 17 N 1.30532 * 120.00137 * 338.93739 * 16 14 13 18 18 Si 1.86798 * 119.99811 * 158.93875 * 16 14 13 19 19 H 1.48499 * 109.47521 * 60.00022 * 18 16 14 20 20 H 1.48508 * 109.46857 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47215 * 299.99659 * 18 16 14 22 22 H 1.08000 * 123.90839 * 359.96387 * 4 3 2 23 23 H 1.08005 * 119.07672 * 180.02562 * 8 7 6 24 24 H 1.07996 * 119.76824 * 180.02562 * 9 8 7 25 25 H 1.07991 * 120.00066 * 174.87017 * 11 10 9 26 26 H 0.96992 * 120.00287 * 175.38579 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2961 1.1245 0.0036 5 16 4.9665 0.8074 0.0033 6 6 4.7279 -0.9344 -0.0028 7 6 3.3652 -1.2268 -0.0050 8 6 2.9321 -2.5697 -0.0094 9 6 3.8189 -3.6159 -0.0121 10 6 5.1979 -3.3775 -0.0095 11 6 6.1454 -4.4922 -0.0118 12 8 5.7405 -5.6330 0.0781 13 6 5.6768 -1.9933 -0.0055 14 6 7.0509 -1.7163 -0.0096 15 1 7.7172 -2.2795 0.6270 16 6 7.5614 -0.7062 -0.8419 17 7 6.8797 -0.3115 -1.8827 18 14 9.2158 0.0721 -0.4590 19 1 10.2704 -0.9732 -0.4753 20 1 9.5254 1.1045 -1.4806 21 1 9.1664 0.7045 0.8838 22 1 2.8715 2.1175 0.0063 23 1 1.8727 -2.7795 -0.0114 24 1 3.4504 -4.6311 -0.0158 25 1 7.2049 -4.3001 -0.0935 26 1 7.1994 0.4308 -2.4189 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396282081.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:47 Heat of formation + Delta-G solvation = 8.776011 kcal Electronic energy + Delta-G solvation = -15578.733045 eV Core-core repulsion = 12905.887090 eV Total energy + Delta-G solvation = -2672.845954 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.26634 -39.17107 -37.68015 -36.25306 -35.02247 -32.01958 -30.46370 -27.63825 -26.03335 -24.31911 -23.05034 -21.29398 -19.89008 -18.15151 -17.88452 -17.24760 -16.88887 -16.29961 -15.74607 -15.25109 -15.12186 -14.76679 -14.63020 -14.16806 -14.02845 -13.85060 -13.66403 -13.45254 -13.15114 -12.70775 -12.43428 -12.36116 -11.93989 -11.77078 -11.39720 -10.91603 -10.37141 -10.07136 -9.30601 -8.97781 -8.25270 -6.63552 -0.39189 0.37769 0.81922 0.92253 1.29089 1.49623 1.56281 1.60983 1.67426 1.75139 2.21565 2.42945 2.65094 3.17689 3.37148 3.75666 3.95649 4.31488 4.53083 4.66790 4.71283 4.89277 5.04717 5.16030 5.23677 5.50766 5.54639 5.90817 6.05105 6.26406 6.45755 6.53464 6.62817 6.99041 8.09118 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.010486 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.496272 B = 2669.705596 C = 4181.859637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.304 3.696 3 C -0.089 4.089 4 C -0.170 4.170 5 S 0.265 5.735 6 C -0.231 4.231 7 C 0.001 3.999 8 C -0.238 4.238 9 C -0.013 4.013 10 C -0.338 4.338 11 C 0.399 3.601 12 O -0.552 6.552 13 C 0.190 3.810 14 C -0.469 4.469 15 H 0.108 0.892 16 C 0.053 3.947 17 N -0.772 5.772 18 Si 0.960 3.040 19 H -0.258 1.258 20 H -0.263 1.263 21 H -0.249 1.249 22 H 0.205 0.795 23 H 0.103 0.897 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.315 8.098 1.601 9.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.011 4.011 3 C -0.110 4.110 4 C -0.311 4.311 5 S 0.537 5.463 6 C -0.347 4.347 7 C -0.008 4.008 8 C -0.259 4.259 9 C -0.032 4.032 10 C -0.344 4.344 11 C 0.269 3.731 12 O -0.436 6.436 13 C 0.184 3.816 14 C -0.495 4.495 15 H 0.125 0.875 16 C -0.171 4.171 17 N -0.394 5.394 18 Si 0.779 3.221 19 H -0.182 1.182 20 H -0.187 1.187 21 H -0.172 1.172 22 H 0.222 0.778 23 H 0.121 0.879 24 H 0.128 0.872 25 H 0.126 0.874 26 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.689 8.648 1.385 9.503 hybrid contribution -0.649 -0.851 -0.156 1.081 sum 3.039 7.797 1.229 8.458 Atomic orbital electron populations 1.81153 1.12438 1.08950 1.12258 1.25229 0.91960 0.92165 0.91790 1.15682 0.84630 0.93266 1.17382 1.25553 1.01870 1.02697 1.01000 1.82494 0.97608 0.97313 1.68912 1.23063 0.95371 0.98661 1.17624 1.18890 0.91304 0.92554 0.98071 1.20024 0.98116 0.90418 1.17356 1.20776 0.92762 0.97596 0.92113 1.21502 0.94092 0.94212 1.24601 1.23558 0.95071 0.85902 0.68609 1.90387 1.84092 1.26279 1.42860 1.18169 0.92492 0.87972 0.82993 1.19883 0.92686 1.16784 1.20183 0.87457 1.26665 1.03267 0.94881 0.92241 1.69662 1.40310 1.20410 1.09065 0.85513 0.77160 0.79045 0.80364 1.18217 1.18691 1.17239 0.77847 0.87928 0.87189 0.87437 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.65 18.54 19.00 0.35 -17.30 15 2 C 0.30 10.83 15.36 88.33 1.36 12.18 15 3 C -0.09 -3.13 5.82 -20.90 -0.12 -3.25 15 4 C -0.17 -4.92 10.55 66.84 0.71 -4.22 15 5 S 0.27 8.66 20.18 -56.49 -1.14 7.52 15 6 C -0.23 -9.65 5.75 23.52 0.14 -9.51 15 7 C 0.00 0.03 6.03 -20.19 -0.12 -0.09 15 8 C -0.24 -10.20 9.77 22.72 0.22 -9.98 15 9 C -0.01 -0.57 9.55 22.43 0.21 -0.36 15 10 C -0.34 -15.30 6.06 -18.62 -0.11 -15.41 15 11 C 0.40 17.08 11.02 69.92 0.77 17.85 15 12 O -0.55 -26.06 17.19 -3.36 -0.06 -26.12 15 13 C 0.19 8.40 5.46 -19.68 -0.11 8.29 15 14 C -0.47 -19.22 7.88 23.29 0.18 -19.03 15 15 H 0.11 4.11 7.51 -2.91 -0.02 4.09 15 16 C 0.05 1.99 4.27 85.43 0.36 2.35 15 17 N -0.77 -30.48 11.29 21.92 0.25 -30.23 15 18 Si 0.96 28.27 29.61 68.60 2.03 30.30 15 19 H -0.26 -7.63 7.11 99.48 0.71 -6.92 15 20 H -0.26 -7.38 7.11 99.48 0.71 -6.67 15 21 H -0.25 -7.10 7.11 99.48 0.71 -6.40 15 22 H 0.20 4.11 8.06 -2.91 -0.02 4.09 15 23 H 0.10 4.15 8.02 -2.91 -0.02 4.13 15 24 H 0.11 4.73 7.66 -2.91 -0.02 4.71 15 25 H 0.11 4.05 7.10 -2.92 -0.02 4.03 15 26 H 0.31 10.76 8.30 -92.71 -0.77 9.99 15 Total: -1.00 -52.12 262.30 6.16 -45.96 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.24 Total: 11.05 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 3.49 Total: -21.18 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.60 Total: -47.52 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.06 Total: -26.12 kcal Atomic # 14 Polarization: 28.27 SS G_CDS: 2.03 Total: 30.30 kcal Atomic # 16 Polarization: 8.66 SS G_CDS: -1.14 Total: 7.52 kcal Total: -52.12 6.16 -45.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396282081.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.733 kcal (2) G-P(sol) polarization free energy of solvation -52.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds