Wall clock time and date at job start Mon Mar 30 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.42379 * 119.77555 * 246.48842 * 3 2 1 5 5 C 1.45169 * 129.00479 * 0.04245 * 4 3 2 6 6 C 1.32002 * 114.92021 * 179.97438 * 5 4 3 7 7 S 1.75301 * 111.29822 * 0.02562 * 6 5 4 8 8 C 1.39475 * 119.07760 * 180.02562 * 4 3 2 9 9 C 1.42412 * 120.00948 * 0.02562 * 8 4 3 10 10 C 1.40633 * 119.82830 * 180.02562 * 9 8 4 11 11 H 1.07998 * 120.00252 * 25.28713 * 10 9 8 12 12 C 1.40225 * 119.99397 * 205.28998 * 10 9 8 13 13 N 1.30676 * 120.00041 * 17.80757 * 12 10 9 14 14 Si 1.86807 * 119.99560 * 197.81214 * 12 10 9 15 15 H 1.48499 * 109.47258 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47041 * 120.00060 * 14 12 10 17 17 H 1.48503 * 109.46586 * 239.99887 * 14 12 10 18 18 C 1.40318 * 120.33694 * 359.70775 * 9 8 4 19 19 C 1.39007 * 119.91342 * 0.55046 * 18 9 8 20 20 C 1.47008 * 119.89540 * 179.74957 * 19 18 9 21 21 O 1.21270 * 120.00090 * 359.72359 * 20 19 18 22 22 H 1.08001 * 122.54086 * 359.97438 * 5 4 3 23 23 H 1.07997 * 124.35089 * 180.02562 * 6 5 4 24 24 H 0.97004 * 119.99228 * 179.97438 * 13 12 10 25 25 H 1.08004 * 120.04582 * 180.27624 * 18 9 8 26 26 H 1.08004 * 119.99727 * 179.45029 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2749 0.4940 1.1332 5 6 2.7492 1.0328 2.3745 6 6 3.6637 1.4127 3.2474 7 16 5.2826 1.1464 2.6300 8 6 4.6695 0.4883 1.1174 9 6 5.3669 -0.0058 -0.0217 10 6 6.7732 -0.0102 -0.0333 11 1 7.3208 -0.0417 0.8970 12 6 7.4643 0.0264 -1.2529 13 7 6.8499 0.4095 -2.3408 14 14 9.2631 -0.4727 -1.3224 15 1 9.7215 -0.8624 0.0352 16 1 9.4223 -1.6227 -2.2483 17 1 10.0755 0.6710 -1.8094 18 6 4.6581 -0.4943 -1.1298 19 6 3.2681 -0.4862 -1.1220 20 6 2.5259 -0.9931 -2.2854 21 8 3.1264 -1.4127 -3.2519 22 1 1.6902 1.1166 2.5690 23 1 3.4428 1.8334 4.2172 24 1 7.3282 0.4351 -3.1844 25 1 5.1918 -0.8720 -1.9894 26 1 1.4459 -0.9958 -2.2776 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396282124.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:14 Heat of formation + Delta-G solvation = 11.274884 kcal Electronic energy + Delta-G solvation = -15542.665371 eV Core-core repulsion = 12869.927776 eV Total energy + Delta-G solvation = -2672.737595 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.68806 -39.31436 -37.35728 -36.66460 -34.96506 -32.48406 -30.14493 -28.04868 -25.95958 -24.15343 -22.92652 -20.72468 -19.99700 -19.33307 -17.78783 -17.35246 -16.56596 -16.36423 -15.77652 -15.44831 -15.24174 -14.73722 -14.60787 -14.38663 -13.95829 -13.82013 -13.46994 -13.42467 -12.96290 -12.84675 -12.46759 -12.32310 -11.91415 -11.73869 -11.46903 -11.18793 -10.72795 -10.15820 -9.31881 -8.99244 -8.61531 -6.55221 -0.36847 0.06650 0.95228 1.16823 1.38849 1.40198 1.53610 1.56898 1.73730 1.89001 2.07360 2.13300 2.76140 3.30485 3.37924 3.43165 3.88208 4.33439 4.47936 4.62534 4.75642 4.93844 5.07429 5.13821 5.22628 5.43059 5.61418 5.66706 5.87738 6.22707 6.42166 6.49307 6.53092 6.76782 7.96518 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.017079 B = 0.009728 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.075798 B = 2877.630104 C = 4433.542511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.295 3.705 3 C -0.141 4.141 4 C -0.003 4.003 5 C -0.150 4.150 6 C -0.174 4.174 7 S 0.084 5.916 8 C -0.237 4.237 9 C 0.126 3.874 10 C -0.428 4.428 11 H 0.101 0.899 12 C 0.035 3.965 13 N -0.776 5.776 14 Si 0.987 3.013 15 H -0.247 1.247 16 H -0.263 1.263 17 H -0.260 1.260 18 C -0.132 4.132 19 C -0.109 4.109 20 C 0.391 3.609 21 O -0.489 6.489 22 H 0.145 0.855 23 H 0.199 0.801 24 H 0.304 0.696 25 H 0.124 0.876 26 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 1.008 6.210 6.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.014 4.014 3 C -0.150 4.150 4 C -0.014 4.014 5 C -0.181 4.181 6 C -0.308 4.308 7 S 0.347 5.653 8 C -0.353 4.353 9 C 0.119 3.881 10 C -0.454 4.454 11 H 0.119 0.881 12 C -0.187 4.187 13 N -0.398 5.398 14 Si 0.806 3.194 15 H -0.170 1.170 16 H -0.188 1.188 17 H -0.185 1.185 18 C -0.155 4.155 19 C -0.114 4.114 20 C 0.252 3.748 21 O -0.365 6.365 22 H 0.163 0.837 23 H 0.216 0.784 24 H 0.116 0.884 25 H 0.142 0.858 26 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.387 1.138 6.087 6.636 hybrid contribution -0.438 -0.305 -0.902 1.048 sum 1.949 0.833 5.185 5.602 Atomic orbital electron populations 1.81134 1.12218 1.14217 1.09974 1.25630 0.92285 0.91491 0.92027 1.15035 0.82843 1.20307 0.96829 1.18989 0.91573 0.97461 0.93356 1.20959 1.00927 1.03722 0.92531 1.25465 0.95424 1.05473 1.04456 1.83534 1.07317 1.65863 1.08553 1.22863 0.95465 1.14828 1.02108 1.17313 0.93777 0.87796 0.89171 1.20218 0.91406 1.38658 0.95112 0.88143 1.27054 1.06452 0.91390 0.93849 1.69749 1.41374 1.26885 1.01772 0.85043 0.74559 0.79220 0.80597 1.16987 1.18778 1.18466 1.21297 0.91488 1.02929 0.99830 1.20272 0.94682 1.01602 0.94820 1.24260 0.95232 0.71609 0.83732 1.90454 1.74604 1.36279 1.35116 0.83700 0.78400 0.88441 0.85846 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -19.31 18.54 19.00 0.35 -18.96 15 2 C 0.30 11.37 13.46 88.33 1.19 12.55 15 3 C -0.14 -5.78 5.85 -20.34 -0.12 -5.90 15 4 C 0.00 -0.12 5.98 -20.17 -0.12 -0.24 15 5 C -0.15 -4.96 9.94 23.14 0.23 -4.73 15 6 C -0.17 -4.97 11.03 66.91 0.74 -4.23 15 7 S 0.08 2.86 22.78 -56.49 -1.29 1.57 15 8 C -0.24 -10.08 6.37 23.61 0.15 -9.93 15 9 C 0.13 5.89 5.58 -21.15 -0.12 5.77 15 10 C -0.43 -19.20 8.79 23.34 0.21 -18.99 15 11 H 0.10 4.24 7.72 -2.91 -0.02 4.22 15 12 C 0.04 1.48 5.11 85.35 0.44 1.92 15 13 N -0.78 -35.29 10.99 21.87 0.24 -35.05 15 14 Si 0.99 31.87 29.60 68.60 2.03 33.90 15 15 H -0.25 -7.66 7.11 99.48 0.71 -6.96 15 16 H -0.26 -8.42 7.11 99.48 0.71 -7.71 15 17 H -0.26 -8.08 7.11 99.48 0.71 -7.37 15 18 C -0.13 -6.28 8.17 22.96 0.19 -6.09 15 19 C -0.11 -4.73 5.87 -20.14 -0.12 -4.85 15 20 C 0.39 15.46 10.98 70.12 0.77 16.23 15 21 O -0.49 -21.95 17.12 -3.00 -0.05 -22.00 15 22 H 0.15 4.28 8.02 -2.91 -0.02 4.26 15 23 H 0.20 3.90 8.06 -2.91 -0.02 3.87 15 24 H 0.30 12.38 8.29 -92.71 -0.77 11.61 15 25 H 0.12 6.28 5.72 -2.91 -0.02 6.27 15 26 H 0.12 3.82 7.14 -2.91 -0.02 3.80 15 Total: -1.00 -52.98 262.44 5.96 -47.02 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.25 Total: 12.00 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 3.43 Total: -18.48 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.59 Total: -54.01 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.05 Total: -22.00 kcal Atomic # 14 Polarization: 31.87 SS G_CDS: 2.03 Total: 33.90 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.29 Total: 1.57 kcal Total: -52.98 5.96 -47.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396282124.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.297 kcal (2) G-P(sol) polarization free energy of solvation -52.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds