Wall clock time and date at job start Mon Mar 30 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.35576 * 124.78517 * 330.41089 * 3 2 1 5 5 C 1.39257 * 115.44525 * 180.02562 * 4 3 2 6 6 C 1.40488 * 112.83860 * 0.25468 * 5 4 3 7 7 C 1.38884 * 120.18638 * 180.30867 * 6 5 4 8 8 C 1.40258 * 121.11422 * 359.47308 * 7 6 5 9 9 C 1.40996 * 119.77725 * 180.25552 * 8 7 6 10 10 H 1.07998 * 120.00011 * 25.19379 * 9 8 7 11 11 C 1.40006 * 120.00083 * 205.19439 * 9 8 7 12 12 N 1.30800 * 119.99761 * 18.10951 * 11 9 8 13 13 Si 1.86792 * 120.00035 * 198.10712 * 11 9 8 14 14 H 1.48494 * 109.47461 * 59.99891 * 13 11 9 15 15 H 1.48506 * 109.47287 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47063 * 299.99960 * 13 11 9 17 17 C 1.40848 * 120.45179 * 0.27259 * 8 7 6 18 18 C 1.38155 * 120.01964 * 359.97438 * 17 8 7 19 19 C 1.46789 * 120.13400 * 180.02562 * 18 17 8 20 20 O 1.21308 * 119.99744 * 179.97438 * 19 18 17 21 21 S 1.75479 * 124.78180 * 150.41544 * 3 2 1 22 22 H 1.08001 * 122.27598 * 359.97438 * 4 3 2 23 23 H 1.07999 * 119.44630 * 179.74779 * 7 6 5 24 24 H 0.96998 * 119.99826 * 179.97438 * 12 11 9 25 25 H 1.07993 * 119.99093 * 180.02562 * 17 8 7 26 26 H 1.08001 * 120.00493 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3419 -0.9673 0.5498 5 6 4.7159 -0.7699 0.4387 6 6 5.0433 0.4213 -0.2304 7 6 6.3735 0.7662 -0.4318 8 6 7.4129 -0.0527 0.0331 9 6 8.7535 0.3274 -0.1821 10 1 9.0046 1.3693 -0.3154 11 6 9.7592 -0.6458 -0.2231 12 7 9.4470 -1.9010 -0.4181 13 14 11.5466 -0.1518 0.0006 14 1 11.7208 0.4882 1.3292 15 1 12.4081 -1.3584 -0.0849 16 1 11.9322 0.8076 -1.0653 17 6 7.1268 -1.2525 0.7132 18 6 5.8151 -1.6298 0.9271 19 6 5.5140 -2.8794 1.6361 20 8 4.3613 -3.2081 1.8230 21 16 3.5684 1.2545 -0.7116 22 1 2.9213 -1.8322 1.0413 23 1 6.6115 1.6826 -0.9512 24 1 10.1437 -2.5752 -0.4469 25 1 7.9329 -1.8772 1.0684 26 1 6.3186 -3.5057 1.9922 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396282446.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:03 Heat of formation + Delta-G solvation = 23.547596 kcal Electronic energy + Delta-G solvation = -15232.135001 eV Core-core repulsion = 12559.929591 eV Total energy + Delta-G solvation = -2672.205410 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.03941 -37.47536 -36.35584 -35.15801 -33.16996 -30.61681 -29.33264 -26.12278 -24.15306 -22.93863 -21.21094 -20.07220 -18.10099 -17.39885 -16.44373 -15.47033 -15.33335 -14.75534 -14.29283 -13.79938 -13.77534 -13.46567 -13.37918 -12.78583 -12.56974 -12.25869 -12.15597 -11.85294 -11.56198 -11.29648 -11.09725 -10.71956 -10.55220 -10.21304 -10.03087 -9.54900 -9.03065 -8.77404 -7.71784 -7.53150 -7.06101 -4.89685 0.83710 1.86626 2.01577 2.55724 2.62889 2.74415 2.76528 2.88741 3.21645 3.45443 3.52194 3.81375 4.14132 4.62258 4.87323 5.00178 5.64797 5.97577 6.01415 6.26599 6.33064 6.49227 6.52223 6.68606 6.73688 7.13860 7.22616 7.33715 7.43500 7.82281 7.99702 8.00822 8.10261 8.18723 9.42583 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.030866 B = 0.006043 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.915511 B = 4632.712529 C = 5455.347000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.306 3.694 3 C -0.233 4.233 4 C 0.015 3.985 5 C -0.181 4.181 6 C -0.046 4.046 7 C -0.214 4.214 8 C 0.117 3.883 9 C -0.406 4.406 10 H 0.096 0.904 11 C 0.068 3.932 12 N -0.762 5.762 13 Si 0.923 3.077 14 H -0.256 1.256 15 H -0.272 1.272 16 H -0.259 1.259 17 C -0.055 4.055 18 C -0.142 4.142 19 C 0.385 3.615 20 O -0.479 6.479 21 S 0.073 5.927 22 H 0.146 0.854 23 H 0.106 0.894 24 H 0.297 0.703 25 H 0.138 0.862 26 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.022 0.509 1.414 5.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.007 4.007 3 C -0.351 4.351 4 C -0.019 4.019 5 C -0.187 4.187 6 C -0.162 4.162 7 C -0.242 4.242 8 C 0.110 3.890 9 C -0.434 4.434 10 H 0.114 0.886 11 C -0.156 4.156 12 N -0.384 5.384 13 Si 0.746 3.254 14 H -0.181 1.181 15 H -0.197 1.197 16 H -0.183 1.183 17 C -0.074 4.074 18 C -0.146 4.146 19 C 0.246 3.754 20 O -0.355 6.355 21 S 0.336 5.664 22 H 0.163 0.837 23 H 0.124 0.876 24 H 0.108 0.892 25 H 0.156 0.844 26 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.308 1.404 0.710 2.794 hybrid contribution 1.704 -1.098 0.616 2.119 sum 4.012 0.306 1.327 4.237 Atomic orbital electron populations 1.81165 1.11511 1.09333 1.11987 1.24530 0.91179 0.92799 0.92193 1.19023 0.87971 1.05960 1.22104 1.20421 0.92017 0.96343 0.93118 1.18226 0.91260 0.97461 1.11725 1.22439 0.96635 0.96875 1.00256 1.20162 0.88583 1.04340 1.11077 1.17402 0.92775 0.90504 0.88320 1.19963 0.90723 0.95838 1.36871 0.88603 1.26230 1.03433 0.94283 0.91641 1.69718 1.37887 1.02339 1.28505 0.86064 0.78910 0.79645 0.80824 1.18055 1.19666 1.18265 1.21862 0.93875 0.96758 0.94894 1.21414 0.92990 0.96677 1.03481 1.24001 0.91220 0.85457 0.74692 1.90408 1.25417 1.71827 1.47821 1.83602 0.95288 1.24566 1.62919 0.83697 0.87558 0.89175 0.84418 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.32 18.54 41.84 0.78 -8.55 15 2 C 0.31 5.98 15.77 -22.47 -0.35 5.62 15 3 C -0.23 -4.52 6.24 -38.61 -0.24 -4.76 15 4 C 0.01 0.30 9.36 -40.15 -0.38 -0.08 15 5 C -0.18 -3.78 6.02 -104.73 -0.63 -4.41 15 6 C -0.05 -0.94 6.45 -38.50 -0.25 -1.19 15 7 C -0.21 -4.43 9.72 -38.58 -0.38 -4.81 15 8 C 0.12 2.47 5.55 -107.11 -0.59 1.87 15 9 C -0.41 -8.24 9.00 -37.87 -0.34 -8.58 15 10 H 0.10 1.84 7.91 -52.49 -0.42 1.42 15 11 C 0.07 1.28 5.11 -17.33 -0.09 1.19 15 12 N -0.76 -14.86 10.98 55.55 0.61 -14.25 15 13 Si 0.92 14.23 29.60 -169.99 -5.03 9.20 15 14 H -0.26 -3.96 7.11 56.52 0.40 -3.56 15 15 H -0.27 -4.13 7.11 56.52 0.40 -3.73 15 16 H -0.26 -4.03 7.11 56.52 0.40 -3.63 15 17 C -0.05 -1.09 8.34 -38.63 -0.32 -1.41 15 18 C -0.14 -2.78 6.06 -102.54 -0.62 -3.40 15 19 C 0.38 6.62 11.44 34.19 0.39 7.01 15 20 O -0.48 -9.33 15.21 5.53 0.08 -9.25 15 21 S 0.07 1.36 23.23 -107.50 -2.50 -1.14 15 22 H 0.15 2.89 6.19 -52.49 -0.32 2.56 15 23 H 0.11 2.07 8.06 -52.49 -0.42 1.64 15 24 H 0.30 5.16 8.30 -40.82 -0.34 4.83 15 25 H 0.14 2.62 6.16 -52.49 -0.32 2.29 15 26 H 0.10 1.25 8.06 -52.49 -0.42 0.83 15 LS Contribution 262.59 15.07 3.96 3.96 Total: -1.00 -23.39 262.59 -6.95 -30.33 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -1.04 Total: 2.65 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -3.80 Total: -12.95 kcal Atomic # 7 Polarization: -24.19 SS G_CDS: 1.39 Total: -22.80 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 14.23 SS G_CDS: -5.03 Total: 9.20 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.50 Total: -1.14 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -23.39 -6.95 -30.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396282446.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.880 kcal (2) G-P(sol) polarization free energy of solvation -23.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds