Wall clock time and date at job start Mon Mar 30 2020 06:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.35619 * 124.80555 * 208.73895 * 3 2 1 5 5 C 1.39230 * 115.35522 * 180.02562 * 4 3 2 6 6 C 1.40183 * 113.05071 * 0.02562 * 5 4 3 7 7 C 1.39990 * 120.59129 * 180.02562 * 6 5 4 8 8 C 1.37278 * 122.55513 * 0.02562 * 7 6 5 9 9 C 1.39772 * 120.95329 * 359.68873 * 8 7 6 10 10 C 1.46307 * 120.46026 * 180.28075 * 9 8 7 11 11 O 1.21383 * 119.99572 * 174.95856 * 10 9 8 12 12 C 1.46432 * 119.07781 * 0.55857 * 9 8 7 13 13 C 1.39646 * 120.71940 * 179.74299 * 12 9 8 14 14 H 1.07996 * 119.99938 * 47.89846 * 13 12 9 15 15 C 1.40608 * 120.00141 * 227.88727 * 13 12 9 16 16 N 1.30461 * 120.00287 * 198.44306 * 15 13 12 17 17 Si 1.86802 * 119.99740 * 18.44343 * 15 13 12 18 18 H 1.48496 * 109.47545 * 265.30069 * 17 15 13 19 19 H 1.48498 * 109.47450 * 25.30145 * 17 15 13 20 20 H 1.48504 * 109.47341 * 145.29793 * 17 15 13 21 21 S 1.75461 * 124.80645 * 28.76253 * 3 2 1 22 22 H 1.07997 * 122.32403 * 0.04252 * 4 3 2 23 23 H 1.07999 * 118.72011 * 179.97438 * 7 6 5 24 24 H 1.07996 * 119.52295 * 179.97438 * 8 7 6 25 25 H 1.08000 * 120.00077 * 354.96432 * 10 9 8 26 26 H 0.97008 * 119.99847 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3417 0.9774 0.5354 5 6 4.7152 0.7778 0.4250 6 6 5.0453 -0.4162 -0.2310 7 6 6.3843 -0.7742 -0.4279 8 6 7.4285 0.0065 0.0016 9 6 7.1973 1.2175 0.6602 10 6 8.3183 2.0442 1.1079 11 8 8.1103 3.1357 1.5964 12 6 5.8175 1.6444 0.9012 13 6 5.5471 2.8452 1.5607 14 1 6.0546 3.7509 1.2630 15 6 4.6140 2.8754 2.6121 16 7 4.0909 4.0099 2.9878 17 14 4.1232 1.2907 3.4709 18 1 2.8849 0.7546 2.8511 19 1 5.2162 0.2947 3.3345 20 1 3.8786 1.5630 4.9102 21 16 3.5701 -1.2618 -0.6932 22 1 2.9215 1.8494 1.0145 23 1 6.6043 -1.7011 -0.9366 24 1 8.4433 -0.3173 -0.1760 25 1 9.3309 1.6832 1.0037 26 1 3.4474 4.0307 3.7134 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396282692.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:17 Heat of formation + Delta-G solvation = 34.897954 kcal Electronic energy + Delta-G solvation = -15763.038046 eV Core-core repulsion = 13091.324824 eV Total energy + Delta-G solvation = -2671.713222 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.77517 -37.40569 -36.21807 -34.29363 -34.08389 -30.78607 -29.35573 -26.19578 -24.10643 -23.08502 -20.78594 -19.80580 -18.74158 -17.17863 -16.31287 -15.88421 -15.17336 -14.72857 -14.20473 -13.77360 -13.62516 -13.49922 -13.04653 -12.73430 -12.64192 -12.40588 -12.35211 -12.02350 -11.53769 -11.44529 -11.13006 -10.54345 -10.40299 -10.19572 -10.04693 -9.71684 -8.70051 -8.43705 -7.84465 -7.54080 -7.06064 -4.99462 0.88635 1.74944 1.80602 2.37157 2.53299 2.86455 2.91478 2.99887 3.35320 3.37942 3.60537 3.81306 4.08731 4.47397 4.79387 5.19586 5.52904 5.64235 5.94852 6.07162 6.18188 6.35031 6.51598 6.54570 6.71162 7.00675 7.16673 7.23210 7.48693 7.79100 7.89052 8.08065 8.17735 8.63837 9.41222 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.011049 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.383529 B = 2533.582718 C = 3645.292079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.303 3.697 3 C -0.226 4.226 4 C 0.012 3.988 5 C -0.187 4.187 6 C -0.031 4.031 7 C -0.240 4.240 8 C 0.021 3.979 9 C -0.311 4.311 10 C 0.370 3.630 11 O -0.477 6.477 12 C 0.145 3.855 13 C -0.348 4.348 14 H 0.126 0.874 15 C 0.078 3.922 16 N -0.746 5.746 17 Si 0.886 3.114 18 H -0.243 1.243 19 H -0.237 1.237 20 H -0.273 1.273 21 S 0.098 5.902 22 H 0.140 0.860 23 H 0.105 0.895 24 H 0.114 0.886 25 H 0.071 0.929 26 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.979 -6.842 -2.189 8.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.010 4.010 3 C -0.344 4.344 4 C -0.022 4.022 5 C -0.193 4.193 6 C -0.148 4.148 7 C -0.266 4.266 8 C -0.001 4.001 9 C -0.316 4.316 10 C 0.234 3.766 11 O -0.355 6.355 12 C 0.138 3.862 13 C -0.372 4.372 14 H 0.144 0.856 15 C -0.150 4.150 16 N -0.366 5.366 17 Si 0.707 3.293 18 H -0.167 1.167 19 H -0.160 1.160 20 H -0.198 1.198 21 S 0.363 5.637 22 H 0.158 0.842 23 H 0.124 0.876 24 H 0.132 0.868 25 H 0.087 0.913 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.495 -7.406 -2.520 7.964 hybrid contribution 0.411 0.620 1.079 1.310 sum 1.905 -6.786 -1.442 7.194 Atomic orbital electron populations 1.81176 1.11369 1.08776 1.11594 1.24435 0.91082 0.93124 0.92402 1.19010 0.88253 1.05029 1.22133 1.20267 0.92168 0.96956 0.92827 1.19010 0.92205 0.98765 1.09336 1.22834 0.96853 0.96389 0.98755 1.19428 0.89115 1.03229 1.14786 1.20734 0.97175 0.91770 0.90464 1.21327 0.93945 0.99461 1.16858 1.23108 0.92003 0.85937 0.75527 1.90516 1.88154 1.21688 1.35149 1.19424 0.88250 0.88852 0.89697 1.19989 1.12477 0.96036 1.08746 0.85616 1.26613 0.92180 0.98698 0.97463 1.69515 1.16977 1.28539 1.21545 0.86642 0.82436 0.81638 0.78588 1.16682 1.15951 1.19815 1.83587 0.94998 1.23231 1.61881 0.84195 0.87644 0.86790 0.91264 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.03 18.54 41.84 0.78 -8.26 15 2 C 0.30 5.86 15.78 -22.47 -0.35 5.51 15 3 C -0.23 -4.32 6.24 -38.59 -0.24 -4.56 15 4 C 0.01 0.24 6.53 -40.15 -0.26 -0.02 15 5 C -0.19 -3.92 4.68 -104.76 -0.49 -4.41 15 6 C -0.03 -0.59 6.48 -38.20 -0.25 -0.83 15 7 C -0.24 -4.10 9.93 -39.27 -0.39 -4.49 15 8 C 0.02 0.34 9.71 -39.36 -0.38 -0.04 15 9 C -0.31 -6.12 6.05 -102.78 -0.62 -6.75 15 10 C 0.37 6.91 11.41 33.97 0.39 7.30 15 11 O -0.48 -10.85 14.82 5.47 0.08 -10.76 15 12 C 0.14 3.21 4.83 -102.04 -0.49 2.72 15 13 C -0.35 -8.31 7.75 -38.16 -0.30 -8.61 15 14 H 0.13 3.30 6.78 -52.49 -0.36 2.94 15 15 C 0.08 1.78 4.52 -17.24 -0.08 1.70 15 16 N -0.75 -17.33 13.91 55.58 0.77 -16.56 15 17 Si 0.89 18.24 24.44 -169.99 -4.15 14.09 15 18 H -0.24 -4.88 5.88 56.52 0.33 -4.55 15 19 H -0.24 -5.04 7.11 56.52 0.40 -4.64 15 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 21 S 0.10 1.67 23.23 -107.50 -2.50 -0.83 15 22 H 0.14 2.90 6.19 -52.49 -0.32 2.57 15 23 H 0.11 1.53 8.06 -52.49 -0.42 1.11 15 24 H 0.11 1.43 8.06 -52.49 -0.42 1.00 15 25 H 0.07 0.98 8.06 -52.49 -0.42 0.56 15 26 H 0.30 6.22 8.29 -40.82 -0.34 5.88 15 LS Contribution 254.37 15.07 3.83 3.83 Total: -1.00 -25.28 254.37 -5.81 -31.09 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -1.15 Total: -0.13 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -3.47 Total: -12.48 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 1.55 Total: -24.82 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -4.15 Total: 14.09 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.50 Total: -0.83 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -25.28 -5.81 -31.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396282692.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.990 kcal (2) G-P(sol) polarization free energy of solvation -25.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds