Wall clock time and date at job start Mon Mar 30 2020 06:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.35619 * 124.80555 * 208.73895 * 3 2 1 5 5 C 1.39230 * 115.35522 * 180.02562 * 4 3 2 6 6 C 1.40183 * 113.05071 * 0.02562 * 5 4 3 7 7 C 1.39990 * 120.59129 * 180.02562 * 6 5 4 8 8 C 1.37278 * 122.55513 * 0.02562 * 7 6 5 9 9 C 1.39772 * 120.95329 * 359.68873 * 8 7 6 10 10 C 1.46307 * 120.46026 * 180.28075 * 9 8 7 11 11 O 1.21383 * 119.99572 * 174.95856 * 10 9 8 12 12 C 1.46432 * 119.07781 * 0.55857 * 9 8 7 13 13 C 1.39646 * 120.71940 * 179.74299 * 12 9 8 14 14 H 1.07996 * 119.99938 * 47.89846 * 13 12 9 15 15 C 1.40608 * 120.00141 * 227.88727 * 13 12 9 16 16 N 1.30461 * 120.00287 * 198.44306 * 15 13 12 17 17 Si 1.86802 * 119.99740 * 18.44343 * 15 13 12 18 18 H 1.48496 * 109.47545 * 265.30069 * 17 15 13 19 19 H 1.48498 * 109.47450 * 25.30145 * 17 15 13 20 20 H 1.48504 * 109.47341 * 145.29793 * 17 15 13 21 21 S 1.75461 * 124.80645 * 28.76253 * 3 2 1 22 22 H 1.07997 * 122.32403 * 0.04252 * 4 3 2 23 23 H 1.07999 * 118.72011 * 179.97438 * 7 6 5 24 24 H 1.07996 * 119.52295 * 179.97438 * 8 7 6 25 25 H 1.08000 * 120.00077 * 354.96432 * 10 9 8 26 26 H 0.97008 * 119.99847 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3417 0.9774 0.5354 5 6 4.7152 0.7778 0.4250 6 6 5.0453 -0.4162 -0.2310 7 6 6.3843 -0.7742 -0.4279 8 6 7.4285 0.0065 0.0016 9 6 7.1973 1.2175 0.6602 10 6 8.3183 2.0442 1.1079 11 8 8.1103 3.1357 1.5964 12 6 5.8175 1.6444 0.9012 13 6 5.5471 2.8452 1.5607 14 1 6.0546 3.7509 1.2630 15 6 4.6140 2.8754 2.6121 16 7 4.0909 4.0099 2.9878 17 14 4.1232 1.2907 3.4709 18 1 2.8849 0.7546 2.8511 19 1 5.2162 0.2947 3.3345 20 1 3.8786 1.5630 4.9102 21 16 3.5701 -1.2618 -0.6932 22 1 2.9215 1.8494 1.0145 23 1 6.6043 -1.7011 -0.9366 24 1 8.4433 -0.3173 -0.1760 25 1 9.3309 1.6832 1.0037 26 1 3.4474 4.0307 3.7134 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396282692.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:17 Heat of formation + Delta-G solvation = 20.951425 kcal Electronic energy + Delta-G solvation = -15763.642813 eV Core-core repulsion = 13091.324824 eV Total energy + Delta-G solvation = -2672.317989 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.30287 -38.97967 -37.79461 -35.88527 -35.61783 -32.35804 -30.86945 -27.75732 -25.59428 -24.67463 -22.25818 -21.34653 -20.28574 -18.75625 -17.85040 -17.35825 -16.74732 -16.24234 -15.66915 -15.33618 -15.17741 -15.12047 -14.65427 -14.30634 -14.14150 -13.96415 -13.90610 -13.58137 -13.11364 -13.03354 -12.63061 -12.15288 -11.89802 -11.69204 -11.54242 -11.34295 -10.22913 -9.95742 -9.32071 -9.18311 -8.54249 -6.65243 -0.61952 0.15651 0.33448 0.89228 1.03203 1.19556 1.29351 1.34720 1.79747 1.86402 1.94562 2.24845 2.47776 2.91957 3.25761 3.81238 4.12735 4.26897 4.45225 4.58810 4.76328 4.81960 5.04951 5.10078 5.20265 5.49403 5.70939 5.73735 6.01912 6.12927 6.32384 6.42559 6.53366 7.20990 7.83925 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.011049 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.383529 B = 2533.582718 C = 3645.292079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.310 3.690 3 C -0.229 4.229 4 C -0.002 4.002 5 C -0.207 4.207 6 C -0.053 4.053 7 C -0.224 4.224 8 C 0.034 3.966 9 C -0.332 4.332 10 C 0.372 3.628 11 O -0.526 6.526 12 C 0.140 3.860 13 C -0.396 4.396 14 H 0.084 0.916 15 C 0.058 3.942 16 N -0.794 5.794 17 Si 0.923 3.077 18 H -0.238 1.238 19 H -0.245 1.245 20 H -0.264 1.264 21 S 0.172 5.828 22 H 0.125 0.875 23 H 0.145 0.855 24 H 0.170 0.830 25 H 0.135 0.865 26 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.424 -10.563 -3.668 12.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.003 4.003 3 C -0.348 4.348 4 C -0.037 4.037 5 C -0.213 4.213 6 C -0.171 4.171 7 C -0.249 4.249 8 C 0.012 3.988 9 C -0.337 4.337 10 C 0.239 3.761 11 O -0.406 6.406 12 C 0.134 3.866 13 C -0.422 4.422 14 H 0.102 0.898 15 C -0.164 4.164 16 N -0.417 5.417 17 Si 0.743 3.257 18 H -0.162 1.162 19 H -0.167 1.167 20 H -0.190 1.190 21 S 0.438 5.562 22 H 0.143 0.857 23 H 0.163 0.837 24 H 0.187 0.813 25 H 0.151 0.849 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.931 -11.149 -4.014 12.207 hybrid contribution 0.077 1.536 1.301 2.014 sum 3.009 -9.613 -2.713 10.432 Atomic orbital electron populations 1.81183 1.11743 1.09239 1.11859 1.24457 0.91091 0.92715 0.92080 1.19248 0.88294 1.05796 1.21419 1.20239 0.92570 0.97116 0.93778 1.19083 0.92041 0.99843 1.10313 1.23259 0.98934 0.96148 0.98718 1.20041 0.88116 1.04144 1.12644 1.21272 0.99901 0.89642 0.88014 1.21846 0.93298 1.01123 1.17447 1.23976 0.94113 0.84678 0.73367 1.90534 1.89050 1.23957 1.37074 1.19794 0.90154 0.88400 0.88262 1.19655 1.14795 0.95842 1.11913 0.89799 1.26998 0.91828 1.00226 0.97374 1.69538 1.19122 1.29735 1.23287 0.86111 0.81861 0.79337 0.78409 1.16232 1.16746 1.18952 1.83309 0.92279 1.20515 1.60131 0.85700 0.83692 0.81299 0.84900 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -17.94 18.54 19.00 0.35 -17.59 15 2 C 0.31 11.57 15.78 88.33 1.39 12.96 15 3 C -0.23 -8.38 6.24 22.91 0.14 -8.24 15 4 C 0.00 -0.09 6.53 21.90 0.14 0.05 15 5 C -0.21 -8.49 4.68 -19.95 -0.09 -8.58 15 6 C -0.05 -1.82 6.48 23.17 0.15 -1.67 15 7 C -0.22 -6.40 9.93 22.47 0.22 -6.17 15 8 C 0.03 0.93 9.71 22.41 0.22 1.15 15 9 C -0.33 -12.36 6.05 -18.67 -0.11 -12.48 15 10 C 0.37 13.20 11.41 69.92 0.80 14.00 15 11 O -0.53 -24.50 14.82 -3.35 -0.05 -24.55 15 12 C 0.14 6.28 4.83 -18.19 -0.09 6.19 15 13 C -0.40 -20.16 7.75 23.19 0.18 -19.98 15 14 H 0.08 4.85 6.78 -2.91 -0.02 4.83 15 15 C 0.06 2.83 4.52 85.48 0.39 3.22 15 16 N -0.79 -39.84 13.91 21.94 0.31 -39.54 15 17 Si 0.92 38.49 24.44 68.60 1.68 40.17 15 18 H -0.24 -9.58 5.88 99.48 0.59 -9.00 15 19 H -0.24 -10.29 7.11 99.48 0.71 -9.58 15 20 H -0.26 -10.46 7.11 99.48 0.71 -9.75 15 21 S 0.17 5.19 23.23 -56.49 -1.31 3.88 15 22 H 0.13 5.41 6.19 -2.91 -0.02 5.40 15 23 H 0.15 3.08 8.06 -2.91 -0.02 3.06 15 24 H 0.17 2.87 8.06 -2.91 -0.02 2.85 15 25 H 0.14 3.06 8.06 -2.91 -0.02 3.04 15 26 H 0.30 13.64 8.29 -92.70 -0.77 12.87 15 Total: -1.00 -58.90 254.37 5.43 -53.46 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 1.12 Total: 3.73 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 3.34 Total: -19.56 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.66 Total: -57.13 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.05 Total: -24.55 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.68 Total: 40.17 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -1.31 Total: 3.88 kcal Total: -58.90 5.43 -53.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396282692.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.414 kcal (2) G-P(sol) polarization free energy of solvation -58.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds