Wall clock time and date at job start Mon Mar 30 2020 06:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.33809 * 122.86084 * 54.03293 * 3 2 1 5 5 S 1.75226 * 111.24157 * 180.02562 * 4 3 2 6 6 C 1.75935 * 92.47369 * 0.02562 * 5 4 3 7 7 C 1.39330 * 110.10827 * 359.97438 * 6 5 4 8 8 C 1.40589 * 119.32366 * 180.02562 * 7 6 5 9 9 C 1.39524 * 120.84184 * 359.97438 * 8 7 6 10 10 C 1.47024 * 119.87543 * 179.97438 * 9 8 7 11 11 O 1.21275 * 120.00272 * 180.02562 * 10 9 8 12 12 C 1.39599 * 120.25468 * 0.02562 * 9 8 7 13 13 C 1.39954 * 119.64921 * 359.97438 * 12 9 8 14 14 C 1.41040 * 119.96828 * 180.02562 * 13 12 9 15 15 H 1.07997 * 119.99849 * 154.35468 * 14 13 12 16 16 C 1.39928 * 120.00133 * 334.34821 * 14 13 12 17 17 N 1.30864 * 119.99707 * 342.60199 * 16 14 13 18 18 Si 1.86799 * 120.00013 * 162.59552 * 16 14 13 19 19 H 1.48505 * 109.46682 * 89.99972 * 18 16 14 20 20 H 1.48499 * 109.47305 * 210.00250 * 18 16 14 21 21 H 1.48504 * 109.47241 * 330.00699 * 18 16 14 22 22 H 1.08003 * 124.38416 * 0.03200 * 4 3 2 23 23 H 1.07999 * 119.58437 * 180.02562 * 8 7 6 24 24 H 1.07998 * 119.99778 * 0.02562 * 10 9 8 25 25 H 1.08003 * 120.17562 * 180.25504 * 12 9 8 26 26 H 0.97001 * 119.99754 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2943 -0.6592 -0.9097 5 16 5.0106 -0.4517 -0.6236 6 6 4.7305 0.5674 0.7828 7 6 3.3625 0.7231 0.9968 8 6 2.9193 1.5064 2.0768 9 6 3.8307 2.1260 2.9326 10 6 3.3437 2.9410 4.0552 11 8 4.1338 3.4810 4.8001 12 6 5.2031 1.9760 2.7263 13 6 5.6616 1.1996 1.6559 14 6 7.0468 1.0430 1.4416 15 1 7.4182 0.1694 0.9267 16 6 7.9399 2.0196 1.8961 17 7 7.5021 3.2135 2.2052 18 14 9.7569 1.6192 2.0617 19 1 10.4510 1.9323 0.7867 20 1 10.3448 2.4306 3.1577 21 1 9.9195 0.1761 2.3722 22 1 2.8768 -1.2439 -1.7161 23 1 1.8599 1.6296 2.2469 24 1 2.2823 3.0588 4.2164 25 1 5.9075 2.4528 3.3919 26 1 8.1212 3.8904 2.5206 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396282796.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:28 Heat of formation + Delta-G solvation = 11.176020 kcal Electronic energy + Delta-G solvation = -15372.215533 eV Core-core repulsion = 12699.473651 eV Total energy + Delta-G solvation = -2672.741882 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.49853 -39.35838 -37.80588 -36.26577 -34.86377 -32.21960 -30.15127 -27.57282 -26.05349 -24.48436 -23.23283 -21.26277 -19.68109 -18.24006 -17.94287 -17.16846 -16.73899 -16.35836 -15.89678 -15.28945 -15.27613 -14.96057 -14.69097 -14.28503 -14.21041 -13.81633 -13.36810 -13.23958 -12.94380 -12.83071 -12.48916 -12.22449 -11.92382 -11.69895 -11.46442 -11.11692 -10.57928 -10.14949 -9.27822 -8.80778 -8.59314 -6.40845 -0.16514 -0.01124 0.75807 1.01026 1.22173 1.37038 1.40867 1.53609 1.68791 1.72768 2.16259 2.42603 2.74737 3.15261 3.50108 3.52376 3.83229 4.34752 4.62608 4.66032 4.74158 4.91471 5.07834 5.15124 5.27389 5.52433 5.78588 5.79701 6.03269 6.39993 6.48426 6.64145 6.72758 6.76979 8.19057 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.008482 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.026115 B = 3300.283207 C = 4703.815555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.304 3.696 3 C -0.060 4.060 4 C -0.120 4.120 5 S 0.152 5.848 6 C -0.231 4.231 7 C -0.038 4.038 8 C -0.166 4.166 9 C -0.164 4.164 10 C 0.391 3.609 11 O -0.510 6.510 12 C -0.139 4.139 13 C 0.112 3.888 14 C -0.475 4.475 15 H 0.090 0.910 16 C 0.037 3.963 17 N -0.809 5.809 18 Si 0.979 3.021 19 H -0.257 1.257 20 H -0.272 1.272 21 H -0.253 1.253 22 H 0.212 0.788 23 H 0.129 0.871 24 H 0.146 0.854 25 H 0.110 0.890 26 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.963 -5.469 -4.478 7.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.012 4.012 3 C -0.079 4.079 4 C -0.259 4.259 5 S 0.419 5.581 6 C -0.347 4.347 7 C -0.046 4.046 8 C -0.188 4.188 9 C -0.166 4.166 10 C 0.253 3.747 11 O -0.386 6.386 12 C -0.163 4.163 13 C 0.106 3.894 14 C -0.503 4.503 15 H 0.108 0.892 16 C -0.181 4.181 17 N -0.433 5.433 18 Si 0.799 3.201 19 H -0.181 1.181 20 H -0.197 1.197 21 H -0.176 1.176 22 H 0.229 0.771 23 H 0.147 0.853 24 H 0.162 0.838 25 H 0.127 0.873 26 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.909 -5.502 -4.792 7.541 hybrid contribution 0.036 0.759 0.931 1.202 sum -1.873 -4.742 -3.860 6.395 Atomic orbital electron populations 1.81193 1.12295 1.10573 1.09658 1.25059 0.91684 0.92163 0.92277 1.15654 0.84601 1.07178 1.00423 1.25971 0.97733 1.00789 1.01446 1.83650 1.01312 1.48485 1.24702 1.22932 0.95775 1.12307 1.03639 1.18623 0.90694 0.99110 0.96138 1.20478 0.98158 1.03166 0.97011 1.20678 0.94385 1.02101 0.99464 1.24638 0.95877 0.74295 0.79861 1.90460 1.62590 1.41081 1.44492 1.21425 0.93920 1.02754 0.98200 1.17192 0.92744 0.90229 0.89197 1.19799 0.91101 1.06085 1.33347 0.89164 1.26796 1.06336 0.93383 0.91574 1.69865 1.39905 1.03413 1.30100 0.85231 0.75595 0.80026 0.79276 1.18104 1.19665 1.17623 0.77138 0.85299 0.83761 0.87258 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -15.12 18.54 19.00 0.35 -14.77 15 2 C 0.30 9.36 15.33 88.33 1.35 10.72 15 3 C -0.06 -1.86 5.82 -20.88 -0.12 -1.99 15 4 C -0.12 -3.07 10.83 66.81 0.72 -2.35 15 5 S 0.15 4.80 22.75 -56.49 -1.29 3.51 15 6 C -0.23 -9.69 6.36 23.58 0.15 -9.54 15 7 C -0.04 -1.47 6.00 -20.28 -0.12 -1.59 15 8 C -0.17 -6.35 9.55 23.15 0.22 -6.13 15 9 C -0.16 -6.98 5.84 -20.34 -0.12 -7.10 15 10 C 0.39 14.45 11.43 70.13 0.80 15.25 15 11 O -0.51 -22.92 17.13 -3.01 -0.05 -22.97 15 12 C -0.14 -6.95 8.19 23.01 0.19 -6.76 15 13 C 0.11 5.44 5.59 -21.13 -0.12 5.32 15 14 C -0.48 -22.89 8.80 23.37 0.21 -22.68 15 15 H 0.09 4.07 7.72 -2.91 -0.02 4.05 15 16 C 0.04 1.72 5.12 85.25 0.44 2.16 15 17 N -0.81 -40.52 10.99 21.83 0.24 -40.28 15 18 Si 0.98 35.47 29.59 68.60 2.03 37.50 15 19 H -0.26 -8.84 7.11 99.48 0.71 -8.14 15 20 H -0.27 -9.73 7.11 99.48 0.71 -9.02 15 21 H -0.25 -8.88 7.11 99.48 0.71 -8.17 15 22 H 0.21 3.43 8.06 -2.91 -0.02 3.40 15 23 H 0.13 4.15 8.01 -2.91 -0.02 4.12 15 24 H 0.15 3.66 8.06 -2.91 -0.02 3.63 15 25 H 0.11 6.02 5.76 -2.91 -0.02 6.00 15 26 H 0.29 13.44 8.30 -92.71 -0.77 12.67 15 Total: -1.00 -59.26 265.08 6.13 -53.14 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 1.24 Total: 8.56 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 3.60 Total: -24.67 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.59 Total: -55.05 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.05 Total: -22.97 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.50 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -1.29 Total: 3.51 kcal Total: -59.26 6.13 -53.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396282796.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.311 kcal (2) G-P(sol) polarization free energy of solvation -59.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds