Wall clock time and date at job start Mon Mar 30 2020 06:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.33857 * 124.69365 * 201.04370 * 3 2 1 5 5 C 1.40474 * 115.64372 * 179.97438 * 4 3 2 6 6 C 1.41915 * 128.10512 * 180.02562 * 5 4 3 7 7 C 1.36808 * 121.96612 * 179.97438 * 6 5 4 8 8 C 1.40088 * 120.67638 * 0.28142 * 7 6 5 9 9 C 1.46288 * 120.57535 * 179.71889 * 8 7 6 10 10 O 1.21392 * 120.00197 * 354.77320 * 9 8 7 11 11 C 1.46435 * 118.85089 * 359.50035 * 8 7 6 12 12 C 1.40072 * 120.46605 * 180.28068 * 11 8 7 13 13 H 1.07993 * 120.00204 * 317.24985 * 12 11 8 14 14 C 1.40554 * 119.99491 * 137.24966 * 12 11 8 15 15 N 1.30495 * 120.00643 * 339.66358 * 14 12 11 16 16 Si 1.86804 * 119.99534 * 159.66564 * 14 12 11 17 17 H 1.48497 * 109.47578 * 59.99939 * 16 14 12 18 18 H 1.48503 * 109.47163 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47090 * 299.99792 * 16 14 12 20 20 C 1.39860 * 112.44597 * 0.02562 * 5 4 3 21 21 S 1.75472 * 124.70072 * 21.01362 * 3 2 1 22 22 H 1.08000 * 122.17709 * 359.95235 * 4 3 2 23 23 H 1.07998 * 119.02245 * 359.97438 * 6 5 4 24 24 H 1.08000 * 119.65960 * 180.02562 * 7 6 5 25 25 H 1.08002 * 120.00535 * 174.77196 * 9 8 7 26 26 H 0.96996 * 120.00573 * 175.57243 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3295 1.0282 0.3952 5 6 4.7168 0.8224 0.3164 6 6 5.7570 1.7233 0.6635 7 6 7.0774 1.3890 0.5358 8 6 7.4520 0.1311 0.0459 9 6 8.8647 -0.2218 -0.0955 10 8 9.7226 0.6090 0.1219 11 6 6.4052 -0.8261 -0.3175 12 6 6.7416 -2.0954 -0.8052 13 1 7.5360 -2.2027 -1.5288 14 6 6.0452 -3.2293 -0.3526 15 7 5.3847 -3.1837 0.7719 16 14 6.0654 -4.8017 -1.3609 17 1 7.4646 -5.2760 -1.5105 18 1 5.2616 -5.8425 -0.6710 19 1 5.4864 -4.5369 -2.7025 20 6 5.0414 -0.4473 -0.1723 21 16 3.5676 -1.3456 -0.5173 22 1 2.9049 1.9552 0.7511 23 1 5.4985 2.7021 1.0398 24 1 7.8387 2.1036 0.8115 25 1 9.1444 -1.2215 -0.3934 26 1 4.8519 -3.9441 1.0527 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396283433.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:15 Heat of formation + Delta-G solvation = 12.018753 kcal Electronic energy + Delta-G solvation = -15493.874662 eV Core-core repulsion = 12821.169324 eV Total energy + Delta-G solvation = -2672.705338 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24289 -39.11925 -37.91494 -36.42603 -35.01539 -32.01790 -30.62523 -27.58712 -26.28333 -23.55250 -23.21259 -21.14332 -19.93709 -18.71548 -17.87965 -17.05050 -16.54105 -16.36834 -15.93504 -15.29541 -14.96046 -14.78884 -14.64610 -14.27276 -14.09916 -13.85069 -13.73211 -13.47562 -13.23709 -12.78523 -12.49072 -12.26145 -11.89615 -11.63690 -11.37385 -10.91854 -10.37006 -10.14246 -9.22874 -9.02222 -8.26315 -6.62647 -0.70287 0.40490 0.66116 0.91638 1.30504 1.43244 1.51806 1.54858 1.84137 1.87608 2.15724 2.29016 2.61627 2.79707 3.38821 3.98012 4.19964 4.32433 4.54914 4.72329 4.82598 4.88700 5.02843 5.22706 5.28400 5.53031 5.61731 5.96009 6.10449 6.24315 6.28824 6.52701 6.61755 7.00723 8.04245 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.015587 B = 0.010787 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.895327 B = 2595.198943 C = 4240.193924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.310 3.690 3 C -0.159 4.159 4 C -0.046 4.046 5 C -0.046 4.046 6 C -0.207 4.207 7 C -0.029 4.029 8 C -0.328 4.328 9 C 0.397 3.603 10 O -0.550 6.550 11 C 0.176 3.824 12 C -0.470 4.470 13 H 0.107 0.893 14 C 0.050 3.950 15 N -0.771 5.771 16 Si 0.956 3.044 17 H -0.252 1.252 18 H -0.266 1.266 19 H -0.254 1.254 20 C -0.183 4.183 21 S 0.181 5.819 22 H 0.171 0.829 23 H 0.133 0.867 24 H 0.115 0.885 25 H 0.104 0.896 26 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.439 -0.618 -1.930 3.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.005 4.005 3 C -0.278 4.278 4 C -0.084 4.084 5 C -0.054 4.054 6 C -0.228 4.228 7 C -0.049 4.049 8 C -0.335 4.335 9 C 0.267 3.733 10 O -0.434 6.434 11 C 0.170 3.830 12 C -0.496 4.496 13 H 0.125 0.875 14 C -0.174 4.174 15 N -0.393 5.393 16 Si 0.775 3.225 17 H -0.176 1.176 18 H -0.190 1.190 19 H -0.178 1.178 20 C -0.300 4.300 21 S 0.451 5.549 22 H 0.188 0.812 23 H 0.151 0.849 24 H 0.133 0.867 25 H 0.121 0.879 26 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.276 -1.898 -2.194 5.167 hybrid contribution 0.686 0.633 0.392 1.012 sum -3.590 -1.265 -1.802 4.211 Atomic orbital electron populations 1.81229 1.11624 1.08628 1.10678 1.24371 0.90893 0.92878 0.92407 1.19744 0.88651 1.03062 1.16376 1.20335 0.91107 0.99086 0.97905 1.18294 0.93153 0.93934 1.00063 1.20403 0.90686 1.00022 1.11716 1.20791 0.95744 0.94655 0.93669 1.21490 0.94628 0.98603 1.18760 1.23531 0.87025 0.92204 0.70573 1.90388 1.53692 1.54982 1.44293 1.18186 0.87576 0.92353 0.84893 1.19867 1.17813 0.90478 1.21484 0.87533 1.26658 0.92631 1.03597 0.94469 1.69632 1.18739 1.34605 1.16367 0.85566 0.80575 0.76567 0.79757 1.17569 1.19027 1.17778 1.23375 0.97645 0.97093 1.11901 1.83893 0.93118 1.12426 1.65431 0.81192 0.84921 0.86735 0.87934 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -15.04 18.54 19.00 0.35 -14.69 15 2 C 0.31 9.97 15.76 88.33 1.39 11.36 15 3 C -0.16 -5.25 6.18 22.52 0.14 -5.11 15 4 C -0.05 -1.47 9.99 21.82 0.22 -1.25 15 5 C -0.05 -1.73 5.86 -21.43 -0.13 -1.86 15 6 C -0.21 -7.60 9.98 22.85 0.23 -7.37 15 7 C -0.03 -1.17 9.53 22.38 0.21 -0.95 15 8 C -0.33 -14.27 6.06 -18.60 -0.11 -14.38 15 9 C 0.40 16.57 11.02 69.91 0.77 17.34 15 10 O -0.55 -25.10 17.19 -3.38 -0.06 -25.16 15 11 C 0.18 7.77 5.47 -19.69 -0.11 7.67 15 12 C -0.47 -19.80 7.90 23.28 0.18 -19.61 15 13 H 0.11 4.20 7.49 -2.91 -0.02 4.17 15 14 C 0.05 1.97 4.29 85.46 0.37 2.34 15 15 N -0.77 -32.18 11.19 21.93 0.25 -31.94 15 16 Si 0.96 30.51 29.61 68.60 2.03 32.54 15 17 H -0.25 -7.82 7.11 99.48 0.71 -7.11 15 18 H -0.27 -8.24 7.11 99.48 0.71 -7.53 15 19 H -0.25 -8.03 7.11 99.48 0.71 -7.33 15 20 C -0.18 -7.62 5.78 23.67 0.14 -7.49 15 21 S 0.18 6.72 20.35 -56.49 -1.15 5.57 15 22 H 0.17 4.16 8.06 -2.91 -0.02 4.14 15 23 H 0.13 3.98 8.06 -2.91 -0.02 3.96 15 24 H 0.11 4.42 7.65 -2.91 -0.02 4.40 15 25 H 0.10 3.84 7.09 -2.91 -0.02 3.82 15 26 H 0.30 11.57 8.29 -92.71 -0.77 10.81 15 Total: -1.00 -49.62 262.65 5.96 -43.66 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.24 Total: 9.33 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 3.30 Total: -19.32 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.60 Total: -46.62 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.06 Total: -25.16 kcal Atomic # 14 Polarization: 30.51 SS G_CDS: 2.03 Total: 32.54 kcal Atomic # 16 Polarization: 6.72 SS G_CDS: -1.15 Total: 5.57 kcal Total: -49.62 5.96 -43.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396283433.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.678 kcal (2) G-P(sol) polarization free energy of solvation -49.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds