Wall clock time and date at job start Mon Mar 30 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39719 * 119.45620 * 92.99240 * 3 2 1 5 5 C 1.36097 * 121.12552 * 180.28679 * 4 3 2 6 6 C 1.40596 * 120.52931 * 359.46361 * 5 4 3 7 7 C 1.39996 * 120.25724 * 180.27719 * 6 5 4 8 8 H 1.08004 * 120.00304 * 154.26066 * 7 6 5 9 9 C 1.40507 * 120.00433 * 334.25893 * 7 6 5 10 10 N 1.30519 * 119.99400 * 342.71269 * 9 7 6 11 11 Si 1.86799 * 120.00213 * 162.70738 * 9 7 6 12 12 H 1.48504 * 109.46873 * 90.00252 * 11 9 7 13 13 H 1.48500 * 109.46757 * 210.00185 * 11 9 7 14 14 H 1.48490 * 109.47186 * 330.00244 * 11 9 7 15 15 C 1.48223 * 119.48518 * 0.25911 * 6 5 4 16 16 C 1.39119 * 128.96333 * 180.02562 * 15 6 5 17 17 C 1.35911 * 115.32153 * 179.97438 * 16 15 6 18 18 C 1.41692 * 124.85937 * 179.97438 * 17 16 15 19 19 O 1.21397 * 119.99994 * 0.02562 * 18 17 16 20 20 S 1.75515 * 110.28199 * 0.02562 * 17 16 15 21 21 C 1.39860 * 118.00027 * 359.97438 * 15 6 5 22 22 H 1.07992 * 119.43260 * 0.02562 * 4 3 2 23 23 H 1.08002 * 119.73046 * 179.74326 * 5 4 3 24 24 H 0.97001 * 119.99917 * 179.97438 * 10 9 7 25 25 H 1.07996 * 122.33989 * 0.02562 * 16 15 6 26 26 H 1.07998 * 119.99918 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2551 0.0645 -1.2149 5 6 4.6154 0.0613 -1.2548 6 6 5.3647 0.0047 -0.0665 7 6 6.7638 0.0076 -0.1139 8 1 7.3320 0.3741 0.7283 9 6 7.4291 -0.4664 -1.2571 10 7 6.7926 -1.2085 -2.1218 11 14 9.2243 -0.0342 -1.5396 12 1 10.0868 -1.0683 -0.9133 13 1 9.4967 0.0203 -2.9984 14 1 9.5166 1.2886 -0.9316 15 6 4.6617 -0.0577 1.2369 16 6 5.1990 -0.1184 2.5187 17 6 4.2904 -0.1664 3.5283 18 6 4.6136 -0.2322 4.9063 19 8 5.7757 -0.2486 5.2571 20 16 2.6593 -0.1367 2.8808 21 6 3.2631 -0.0571 1.2293 22 1 2.6970 0.1129 -2.1382 23 1 5.1235 0.1072 -2.2068 24 1 7.2517 -1.5354 -2.9113 25 1 6.2638 -0.1259 2.6990 26 1 3.8262 -0.2676 5.6445 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396283434.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:34 Heat of formation + Delta-G solvation = 17.490631 kcal Electronic energy + Delta-G solvation = -15283.183899 eV Core-core repulsion = 12610.715839 eV Total energy + Delta-G solvation = -2672.468060 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.87041 -38.07169 -35.79239 -34.95819 -33.69115 -30.59981 -29.17827 -26.67476 -24.53479 -22.76753 -21.24435 -19.14717 -18.34393 -18.09861 -16.11231 -15.80678 -15.32212 -15.12248 -13.99309 -13.86921 -13.61488 -13.48092 -13.18558 -12.82657 -12.32185 -12.21456 -12.10119 -11.90587 -11.58033 -11.42319 -11.05571 -10.67457 -10.34153 -10.25328 -10.00871 -9.79981 -9.34940 -8.64101 -7.85575 -7.65045 -7.18981 -5.11423 0.99707 1.83085 2.24096 2.61917 2.64972 2.68624 2.69476 2.73587 3.33004 3.46841 3.53905 3.73559 4.21775 4.93145 4.98801 5.03460 5.75914 5.87088 6.01868 6.03291 6.17958 6.36664 6.63135 6.69952 6.81004 7.09734 7.22322 7.28049 7.41751 7.75377 7.92092 8.01598 8.08792 8.42626 9.17039 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.016540 B = 0.008595 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.451182 B = 3256.740050 C = 4869.349852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.281 3.719 3 C -0.177 4.177 4 C -0.008 4.008 5 C -0.187 4.187 6 C 0.159 3.841 7 C -0.366 4.366 8 H 0.102 0.898 9 C 0.064 3.936 10 N -0.722 5.722 11 Si 0.926 3.074 12 H -0.258 1.258 13 H -0.266 1.266 14 H -0.249 1.249 15 C -0.210 4.210 16 C 0.043 3.957 17 C -0.382 4.382 18 C 0.413 3.587 19 O -0.496 6.496 20 S 0.062 5.938 21 C 0.004 3.996 22 H 0.108 0.892 23 H 0.131 0.869 24 H 0.302 0.698 25 H 0.138 0.862 26 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.145 1.177 0.070 3.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.030 4.030 3 C -0.191 4.191 4 C -0.031 4.031 5 C -0.208 4.208 6 C 0.152 3.848 7 C -0.390 4.390 8 H 0.120 0.880 9 C -0.165 4.165 10 N -0.340 5.340 11 Si 0.747 3.253 12 H -0.183 1.183 13 H -0.190 1.190 14 H -0.173 1.173 15 C -0.216 4.216 16 C 0.013 3.987 17 C -0.497 4.497 18 C 0.278 3.722 19 O -0.377 6.377 20 S 0.326 5.674 21 C -0.116 4.116 22 H 0.126 0.874 23 H 0.148 0.852 24 H 0.114 0.886 25 H 0.156 0.844 26 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.612 0.970 0.809 1.404 hybrid contribution 2.272 0.019 -0.964 2.468 sum 2.884 0.989 -0.155 3.053 Atomic orbital electron populations 1.81082 1.12400 1.15235 1.08487 1.25973 0.92816 0.91522 0.92643 1.14576 0.82841 1.29713 0.91967 1.20174 0.94494 0.94288 0.94133 1.20698 0.92174 1.09603 0.98341 1.18593 0.92497 0.84919 0.88801 1.20230 0.92207 1.26356 1.00187 0.87961 1.26477 1.03266 0.92524 0.94256 1.69652 1.39812 1.16607 1.07957 0.85944 0.78729 0.81266 0.79339 1.18264 1.19006 1.17259 1.18868 0.90775 1.18300 0.93657 1.20435 0.99927 0.88237 0.90149 1.23141 0.96457 1.30441 0.99708 1.21385 0.91109 0.71085 0.88654 1.90509 1.23760 1.39749 1.83638 1.83629 1.06877 1.79371 0.97567 1.22559 0.96118 0.98242 0.94652 0.87443 0.85170 0.88574 0.84394 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.64 18.54 41.84 0.78 -9.86 15 2 C 0.28 5.85 15.00 -22.47 -0.34 5.51 15 3 C -0.18 -3.65 5.78 -106.24 -0.61 -4.26 15 4 C -0.01 -0.16 9.58 -39.80 -0.38 -0.54 15 5 C -0.19 -3.82 8.58 -39.46 -0.34 -4.16 15 6 C 0.16 3.39 5.75 -104.25 -0.60 2.79 15 7 C -0.37 -7.38 8.79 -38.07 -0.33 -7.71 15 8 H 0.10 1.95 7.50 -52.48 -0.39 1.55 15 9 C 0.06 1.18 5.13 -17.25 -0.09 1.09 15 10 N -0.72 -13.87 10.98 55.58 0.61 -13.26 15 11 Si 0.93 13.88 29.60 -169.99 -5.03 8.85 15 12 H -0.26 -3.93 7.11 56.52 0.40 -3.53 15 13 H -0.27 -3.88 7.11 56.52 0.40 -3.48 15 14 H -0.25 -3.78 7.11 56.52 0.40 -3.38 15 15 C -0.21 -4.48 6.00 -104.86 -0.63 -5.11 15 16 C 0.04 0.88 9.40 -40.09 -0.38 0.50 15 17 C -0.38 -7.24 6.20 -39.10 -0.24 -7.48 15 18 C 0.41 7.16 11.46 32.05 0.37 7.52 15 19 O -0.50 -9.99 17.46 5.46 0.10 -9.90 15 20 S 0.06 1.16 22.90 -107.50 -2.46 -1.30 15 21 C 0.00 0.08 6.34 -37.80 -0.24 -0.16 15 22 H 0.11 1.85 8.06 -52.49 -0.42 1.42 15 23 H 0.13 2.61 6.18 -52.49 -0.32 2.29 15 24 H 0.30 5.08 8.29 -40.82 -0.34 4.74 15 25 H 0.14 2.70 7.57 -52.49 -0.40 2.30 15 26 H 0.08 1.11 8.06 -52.49 -0.42 0.69 15 LS Contribution 264.46 15.07 3.99 3.99 Total: -1.00 -23.94 264.46 -6.94 -30.88 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -1.09 Total: 2.61 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -3.81 Total: -12.00 kcal Atomic # 7 Polarization: -24.51 SS G_CDS: 1.39 Total: -23.12 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.10 Total: -9.90 kcal Atomic # 14 Polarization: 13.88 SS G_CDS: -5.03 Total: 8.85 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.46 Total: -1.30 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -23.94 -6.94 -30.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396283434.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.367 kcal (2) G-P(sol) polarization free energy of solvation -23.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds