Wall clock time and date at job start Mon Mar 30 2020 06:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39719 * 119.45620 * 92.99240 * 3 2 1 5 5 C 1.36097 * 121.12552 * 180.28679 * 4 3 2 6 6 C 1.40596 * 120.52931 * 359.46361 * 5 4 3 7 7 C 1.39996 * 120.25724 * 180.27719 * 6 5 4 8 8 H 1.08004 * 120.00304 * 154.26066 * 7 6 5 9 9 C 1.40507 * 120.00433 * 334.25893 * 7 6 5 10 10 N 1.30519 * 119.99400 * 342.71269 * 9 7 6 11 11 Si 1.86799 * 120.00213 * 162.70738 * 9 7 6 12 12 H 1.48504 * 109.46873 * 90.00252 * 11 9 7 13 13 H 1.48500 * 109.46757 * 210.00185 * 11 9 7 14 14 H 1.48490 * 109.47186 * 330.00244 * 11 9 7 15 15 C 1.48223 * 119.48518 * 0.25911 * 6 5 4 16 16 C 1.39119 * 128.96333 * 180.02562 * 15 6 5 17 17 C 1.35911 * 115.32153 * 179.97438 * 16 15 6 18 18 C 1.41692 * 124.85937 * 179.97438 * 17 16 15 19 19 O 1.21397 * 119.99994 * 0.02562 * 18 17 16 20 20 S 1.75515 * 110.28199 * 0.02562 * 17 16 15 21 21 C 1.39860 * 118.00027 * 359.97438 * 15 6 5 22 22 H 1.07992 * 119.43260 * 0.02562 * 4 3 2 23 23 H 1.08002 * 119.73046 * 179.74326 * 5 4 3 24 24 H 0.97001 * 119.99917 * 179.97438 * 10 9 7 25 25 H 1.07996 * 122.33989 * 0.02562 * 16 15 6 26 26 H 1.07998 * 119.99918 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2551 0.0645 -1.2149 5 6 4.6154 0.0613 -1.2548 6 6 5.3647 0.0047 -0.0665 7 6 6.7638 0.0076 -0.1139 8 1 7.3320 0.3741 0.7283 9 6 7.4291 -0.4664 -1.2571 10 7 6.7926 -1.2085 -2.1218 11 14 9.2243 -0.0342 -1.5396 12 1 10.0868 -1.0683 -0.9133 13 1 9.4967 0.0203 -2.9984 14 1 9.5166 1.2886 -0.9316 15 6 4.6617 -0.0577 1.2369 16 6 5.1990 -0.1184 2.5187 17 6 4.2904 -0.1664 3.5283 18 6 4.6136 -0.2322 4.9063 19 8 5.7757 -0.2486 5.2571 20 16 2.6593 -0.1367 2.8808 21 6 3.2631 -0.0571 1.2293 22 1 2.6970 0.1129 -2.1382 23 1 5.1235 0.1072 -2.2068 24 1 7.2517 -1.5354 -2.9113 25 1 6.2638 -0.1259 2.6990 26 1 3.8262 -0.2676 5.6445 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396283434.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:33 Heat of formation + Delta-G solvation = 7.398772 kcal Electronic energy + Delta-G solvation = -15283.621515 eV Core-core repulsion = 12610.715839 eV Total energy + Delta-G solvation = -2672.905676 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39031 -39.58802 -37.42329 -36.46231 -35.23500 -32.14764 -30.71098 -28.21586 -26.04811 -24.31025 -22.76414 -20.66639 -19.84997 -19.64973 -17.59481 -17.25443 -16.80316 -16.61936 -15.41290 -15.37961 -15.15557 -15.01287 -14.78333 -14.27319 -13.88996 -13.75632 -13.63862 -13.44631 -13.02583 -12.88233 -12.35932 -12.14988 -11.80315 -11.76510 -11.52853 -11.25649 -10.80352 -10.20013 -9.38477 -9.11277 -8.71704 -6.67183 -0.51811 0.26224 0.70686 1.13789 1.17015 1.37624 1.43142 1.57283 1.89188 1.97909 2.09305 2.25245 2.65072 3.39912 3.41364 3.62571 4.26607 4.37015 4.45849 4.57641 4.72698 4.84012 5.08710 5.15011 5.29080 5.53961 5.68072 5.73702 5.86383 6.22505 6.37364 6.52914 6.61779 6.79517 7.78229 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.016540 B = 0.008595 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.451182 B = 3256.740050 C = 4869.349852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.290 3.710 3 C -0.192 4.192 4 C -0.007 4.007 5 C -0.197 4.197 6 C 0.133 3.867 7 C -0.377 4.377 8 H 0.106 0.894 9 C 0.036 3.964 10 N -0.742 5.742 11 Si 0.992 3.008 12 H -0.259 1.259 13 H -0.256 1.256 14 H -0.252 1.252 15 C -0.226 4.226 16 C 0.025 3.975 17 C -0.382 4.382 18 C 0.420 3.580 19 O -0.523 6.523 20 S 0.098 5.902 21 C -0.018 4.018 22 H 0.128 0.872 23 H 0.131 0.869 24 H 0.314 0.686 25 H 0.137 0.863 26 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.754 1.221 0.398 3.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.019 4.019 3 C -0.207 4.207 4 C -0.029 4.029 5 C -0.219 4.219 6 C 0.126 3.874 7 C -0.401 4.401 8 H 0.124 0.876 9 C -0.192 4.192 10 N -0.361 5.361 11 Si 0.810 3.190 12 H -0.183 1.183 13 H -0.179 1.179 14 H -0.175 1.175 15 C -0.231 4.231 16 C -0.006 4.006 17 C -0.497 4.497 18 C 0.286 3.714 19 O -0.404 6.404 20 S 0.362 5.638 21 C -0.138 4.138 22 H 0.146 0.854 23 H 0.148 0.852 24 H 0.127 0.873 25 H 0.155 0.845 26 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.188 1.009 1.135 1.928 hybrid contribution 2.110 -0.027 -1.016 2.342 sum 3.297 0.983 0.119 3.443 Atomic orbital electron populations 1.81081 1.12705 1.16200 1.08999 1.25969 0.92714 0.91038 0.92179 1.14657 0.82697 1.30951 0.92373 1.20358 0.94373 0.93458 0.94739 1.20725 0.92544 1.10482 0.98127 1.18904 0.93345 0.85897 0.89269 1.20534 0.92161 1.26131 1.01242 0.87591 1.27193 1.06632 0.91924 0.93401 1.69641 1.41528 1.16541 1.08423 0.84987 0.73843 0.80568 0.79575 1.18319 1.17926 1.17486 1.19058 0.91179 1.18782 0.94122 1.20502 1.00255 0.89560 0.90299 1.23526 0.96560 1.29087 1.00571 1.21988 0.91546 0.69380 0.88533 1.90508 1.25362 1.40732 1.83830 1.83405 1.06038 1.78462 0.95851 1.22824 0.96398 0.98612 0.95965 0.85409 0.85182 0.87302 0.84522 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -21.67 18.54 19.00 0.35 -21.31 15 2 C 0.29 11.96 15.00 88.33 1.32 13.28 15 3 C -0.19 -7.92 5.78 -20.91 -0.12 -8.04 15 4 C -0.01 -0.26 9.58 22.13 0.21 -0.05 15 5 C -0.20 -8.14 8.58 22.35 0.19 -7.95 15 6 C 0.13 5.73 5.75 -19.62 -0.11 5.61 15 7 C -0.38 -15.26 8.79 23.25 0.20 -15.05 15 8 H 0.11 4.07 7.50 -2.91 -0.02 4.04 15 9 C 0.04 1.30 5.13 85.44 0.44 1.73 15 10 N -0.74 -28.09 10.98 21.92 0.24 -27.85 15 11 Si 0.99 27.27 29.60 68.60 2.03 29.30 15 12 H -0.26 -7.12 7.11 99.48 0.71 -6.42 15 13 H -0.26 -6.58 7.11 99.48 0.71 -5.87 15 14 H -0.25 -6.96 7.11 99.48 0.71 -6.25 15 15 C -0.23 -9.67 6.00 -20.02 -0.12 -9.79 15 16 C 0.02 1.00 9.40 21.94 0.21 1.21 15 17 C -0.38 -13.95 6.20 22.58 0.14 -13.81 15 18 C 0.42 13.55 11.46 68.67 0.79 14.34 15 19 O -0.52 -20.22 17.46 -3.39 -0.06 -20.28 15 20 S 0.10 3.53 22.90 -56.49 -1.29 2.24 15 21 C -0.02 -0.77 6.34 23.43 0.15 -0.62 15 22 H 0.13 4.32 8.06 -2.91 -0.02 4.30 15 23 H 0.13 5.26 6.18 -2.91 -0.02 5.24 15 24 H 0.31 10.24 8.29 -92.71 -0.77 9.47 15 25 H 0.14 5.41 7.57 -2.91 -0.02 5.39 15 26 H 0.13 3.02 8.06 -2.91 -0.02 3.00 15 Total: -1.00 -49.96 264.46 5.81 -44.14 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.24 Total: 12.90 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 3.30 Total: -19.14 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.59 Total: -49.17 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.06 Total: -20.28 kcal Atomic # 14 Polarization: 27.27 SS G_CDS: 2.03 Total: 29.30 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -1.29 Total: 2.24 kcal Total: -49.96 5.81 -44.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396283434.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.543 kcal (2) G-P(sol) polarization free energy of solvation -49.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds