Wall clock time and date at job start Mon Mar 30 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39306 * 119.62060 * 85.59511 * 3 2 1 5 5 C 1.39116 * 121.27329 * 180.02562 * 4 3 2 6 6 S 1.76063 * 130.11752 * 180.32005 * 5 4 3 7 7 C 1.75471 * 91.71347 * 180.02562 * 6 5 4 8 8 C 1.39610 * 124.88890 * 179.91492 * 7 6 5 9 9 H 1.07997 * 120.00053 * 190.07642 * 8 7 6 10 10 C 1.40518 * 120.00261 * 10.08268 * 8 7 6 11 11 N 1.30543 * 120.00570 * 175.22427 * 10 8 7 12 12 Si 1.86801 * 119.99812 * 355.22070 * 10 8 7 13 13 H 1.48498 * 109.47287 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.47187 * 300.00228 * 12 10 8 15 15 H 1.48498 * 109.47379 * 59.99929 * 12 10 8 16 16 C 1.37502 * 110.22046 * 359.65536 * 7 6 5 17 17 C 1.38720 * 115.12373 * 0.26388 * 16 7 6 18 18 C 1.47927 * 128.61564 * 180.02562 * 17 16 7 19 19 C 1.46516 * 120.23450 * 0.02562 * 18 17 16 20 20 O 1.21357 * 119.99477 * 180.02562 * 19 18 17 21 21 C 1.38688 * 119.52626 * 180.02562 * 18 17 16 22 22 H 1.08004 * 119.36142 * 359.97438 * 4 3 2 23 23 H 0.96998 * 119.99472 * 359.39997 * 11 10 8 24 24 H 1.08002 * 122.44011 * 180.28733 * 16 7 6 25 25 H 1.07991 * 120.00139 * 359.97438 * 19 18 17 26 26 H 1.08006 * 119.93859 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2566 -0.0921 -1.2074 5 6 4.6472 -0.0951 -1.2474 6 16 5.7424 -0.1931 -2.6224 7 6 7.1483 -0.1194 -1.5750 8 6 8.4734 -0.1528 -2.0135 9 1 9.2757 -0.2665 -1.2995 10 6 8.7632 -0.0384 -3.3837 11 7 10.0037 0.0242 -3.7856 12 14 7.3734 0.0240 -4.6302 13 1 7.9399 0.1445 -5.9976 14 1 6.5681 -1.2202 -4.5365 15 1 6.5072 1.1966 -4.3477 16 6 6.7571 -0.0183 -0.2608 17 6 5.3854 -0.0028 -0.0541 18 6 4.6453 0.0958 1.2229 19 6 5.3721 0.1950 2.4912 20 8 4.7605 0.2753 3.5363 21 6 3.2584 0.0938 1.2109 22 1 2.7001 -0.1638 -2.1303 23 1 10.7251 0.0005 -3.1376 24 1 7.4660 0.0450 0.5515 25 1 6.4520 0.1959 2.4960 26 1 2.7113 0.1651 2.1394 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396283437.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:58 Heat of formation + Delta-G solvation = -5.600721 kcal Electronic energy + Delta-G solvation = -15164.271383 eV Core-core repulsion = 12490.802007 eV Total energy + Delta-G solvation = -2673.469376 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.55663 -39.10701 -37.77078 -36.75044 -35.12564 -32.07516 -31.57134 -27.84324 -25.72931 -24.07658 -22.55056 -21.15278 -20.81295 -19.61824 -17.63038 -17.33784 -16.78088 -16.19869 -15.88168 -15.38509 -15.32680 -15.21760 -14.72942 -14.51539 -14.35520 -14.23426 -13.76808 -13.45678 -13.08817 -12.74366 -12.62417 -12.27924 -12.02603 -11.71030 -11.55752 -10.75436 -10.45637 -10.33128 -9.82437 -9.50274 -8.48948 -6.79134 -0.50497 0.08320 0.65850 1.05022 1.11213 1.41399 1.45133 1.68851 1.70619 1.88342 2.11836 2.24638 2.74164 3.06474 3.13310 3.62823 3.96614 4.05365 4.35251 4.57789 4.80789 4.94690 4.98338 5.02907 5.19368 5.26846 5.41393 5.53244 5.74006 5.88410 6.04489 6.20488 6.57896 6.64819 7.54185 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.025400 B = 0.007132 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.113168 B = 3924.872484 C = 5009.633175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.296 3.704 3 C -0.149 4.149 4 C 0.049 3.951 5 C -0.266 4.266 6 S 0.006 5.994 7 C 0.049 3.951 8 C -0.398 4.398 9 H 0.097 0.903 10 C 0.023 3.977 11 N -0.768 5.768 12 Si 0.924 3.076 13 H -0.205 1.205 14 H -0.180 1.180 15 H -0.182 1.182 16 C -0.362 4.362 17 C 0.083 3.917 18 C -0.261 4.261 19 C 0.400 3.600 20 O -0.521 6.521 21 C 0.031 3.969 22 H 0.140 0.860 23 H 0.299 0.701 24 H 0.129 0.871 25 H 0.121 0.879 26 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.772 -0.182 -2.312 2.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.017 4.017 3 C -0.155 4.155 4 C 0.025 3.975 5 C -0.377 4.377 6 S 0.260 5.740 7 C -0.070 4.070 8 C -0.431 4.431 9 H 0.114 0.886 10 C -0.203 4.203 11 N -0.386 5.386 12 Si 0.741 3.259 13 H -0.127 1.127 14 H -0.106 1.106 15 H -0.107 1.107 16 C -0.385 4.385 17 C 0.076 3.924 18 C -0.264 4.264 19 C 0.265 3.735 20 O -0.401 6.401 21 C 0.009 3.991 22 H 0.158 0.842 23 H 0.112 0.888 24 H 0.147 0.853 25 H 0.137 0.863 26 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.182 -0.127 -4.840 5.793 hybrid contribution 1.579 -0.058 3.167 3.539 sum -1.603 -0.186 -1.673 2.324 Atomic orbital electron populations 1.81180 1.12824 1.13662 1.08885 1.25672 0.92366 0.91366 0.92260 1.15097 0.83354 1.22714 0.94356 1.20442 0.91037 0.89315 0.96747 1.22720 0.97110 1.20306 0.97551 1.84646 0.97920 1.82951 1.08454 1.21629 0.95461 0.94556 0.95321 1.20899 0.92671 1.33433 0.96128 0.88556 1.28534 1.02408 0.89822 0.99542 1.70489 1.01183 1.25582 1.41394 0.84525 0.75165 0.86551 0.79643 1.12721 1.10589 1.10679 1.19733 0.93585 1.29547 0.95587 1.19106 0.92485 0.89570 0.91278 1.21185 0.93231 1.18403 0.93600 1.23812 0.95791 0.68376 0.85490 1.90468 1.74107 1.39892 1.35662 1.20999 0.93007 0.88692 0.96407 0.84221 0.88805 0.85320 0.86277 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -17.28 18.54 19.01 0.35 -16.92 15 2 C 0.30 9.65 15.28 88.33 1.35 11.00 15 3 C -0.15 -4.77 5.72 -21.42 -0.12 -4.89 15 4 C 0.05 1.57 9.68 22.74 0.22 1.79 15 5 C -0.27 -9.54 6.46 23.06 0.15 -9.39 15 6 S 0.01 0.21 15.30 -56.49 -0.86 -0.66 15 7 C 0.05 1.95 5.96 22.43 0.13 2.09 15 8 C -0.40 -16.25 9.71 23.16 0.22 -16.02 15 9 H 0.10 4.01 8.06 -2.91 -0.02 3.98 15 10 C 0.02 0.90 5.53 85.44 0.47 1.37 15 11 N -0.77 -31.31 13.64 21.93 0.30 -31.01 15 12 Si 0.92 29.37 24.49 68.60 1.68 31.05 15 13 H -0.20 -6.11 7.11 99.48 0.71 -5.40 15 14 H -0.18 -5.32 6.30 96.89 0.61 -4.71 15 15 H -0.18 -5.50 6.36 97.95 0.62 -4.88 15 16 C -0.36 -13.91 9.75 22.21 0.22 -13.69 15 17 C 0.08 3.10 6.01 -20.01 -0.12 2.97 15 18 C -0.26 -8.99 6.07 -18.44 -0.11 -9.10 15 19 C 0.40 12.89 11.28 69.98 0.79 13.68 15 20 O -0.52 -19.31 17.14 -3.27 -0.06 -19.37 15 21 C 0.03 1.03 9.24 22.73 0.21 1.24 15 22 H 0.14 3.74 8.06 -2.91 -0.02 3.71 15 23 H 0.30 11.76 8.72 -92.71 -0.81 10.95 15 24 H 0.13 4.60 7.39 -2.91 -0.02 4.58 15 25 H 0.12 3.20 7.30 -2.92 -0.02 3.18 15 26 H 0.13 4.18 7.61 -2.91 -0.02 4.16 15 Total: -1.00 -46.14 256.69 5.84 -40.29 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 1.02 Total: 15.58 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 3.41 Total: -18.96 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.65 Total: -47.93 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.06 Total: -19.37 kcal Atomic # 14 Polarization: 29.37 SS G_CDS: 1.68 Total: 31.05 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -0.86 Total: -0.66 kcal Total: -46.14 5.84 -40.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396283437.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.694 kcal (2) G-P(sol) polarization free energy of solvation -46.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds