Wall clock time and date at job start Mon Mar 30 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39779 * 120.24950 * 107.28735 * 3 2 1 5 5 C 1.35891 * 120.86693 * 179.72402 * 4 3 2 6 6 C 1.42148 * 121.38601 * 0.29544 * 5 4 3 7 7 C 1.40201 * 128.33873 * 179.97438 * 6 5 4 8 8 C 1.35281 * 115.33257 * 180.02562 * 7 6 5 9 9 C 1.41842 * 124.77612 * 179.97438 * 8 7 6 10 10 O 1.21382 * 120.00212 * 0.02562 * 9 8 7 11 11 S 1.75465 * 110.44379 * 359.97438 * 8 7 6 12 12 C 1.39815 * 118.97387 * 359.97438 * 6 5 4 13 13 C 1.41792 * 120.25091 * 287.55483 * 3 2 1 14 14 C 1.40148 * 120.25874 * 0.02562 * 13 3 2 15 15 H 1.08000 * 119.99805 * 39.10129 * 14 13 3 16 16 C 1.40397 * 120.00297 * 219.10921 * 14 13 3 17 17 N 1.30600 * 120.00206 * 20.87731 * 16 14 13 18 18 Si 1.86803 * 119.99858 * 200.88089 * 16 14 13 19 19 H 1.48504 * 109.47004 * 89.99796 * 18 16 14 20 20 H 1.48502 * 109.46867 * 209.99350 * 18 16 14 21 21 H 1.48494 * 109.47225 * 329.99758 * 18 16 14 22 22 H 1.07996 * 119.56095 * 359.97438 * 4 3 2 23 23 H 1.08002 * 119.30710 * 180.27853 * 5 4 3 24 24 H 1.07997 * 122.33143 * 359.97438 * 7 6 5 25 25 H 1.08001 * 120.00094 * 180.02562 * 9 8 7 26 26 H 0.96993 * 119.99926 * 182.01836 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2720 0.3598 -1.1529 5 6 4.6308 0.3701 -1.1652 6 6 5.3843 0.0120 -0.0143 7 6 6.7778 -0.0287 0.1348 8 6 7.2183 -0.4106 1.3555 9 6 8.5834 -0.5213 1.7248 10 8 9.4531 -0.2639 0.9183 11 16 5.8634 -0.7498 2.4176 12 6 4.7062 -0.3569 1.1514 13 6 3.2825 -0.3685 1.1678 14 6 2.5927 -0.7372 2.3307 15 1 1.6956 -1.3344 2.2600 16 6 3.0678 -0.3303 3.5876 17 7 3.8743 0.6927 3.6810 18 14 2.5465 -1.2522 5.1264 19 1 3.5086 -2.3511 5.3949 20 1 2.5276 -0.3179 6.2806 21 1 1.1891 -1.8204 4.9271 22 1 2.7288 0.6365 -2.0444 23 1 5.1491 0.6561 -2.0686 24 1 7.4524 0.2262 -0.6691 25 1 8.8488 -0.8346 2.7237 26 1 4.2258 0.9558 4.5459 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396283471.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:28 Heat of formation + Delta-G solvation = 9.413523 kcal Electronic energy + Delta-G solvation = -15547.973379 eV Core-core repulsion = 12875.155070 eV Total energy + Delta-G solvation = -2672.818310 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.52125 -39.75507 -37.40349 -36.32215 -35.07599 -32.08983 -30.81536 -27.66902 -26.63403 -23.96186 -22.91345 -20.81470 -19.90361 -19.09241 -18.05387 -17.14470 -16.65595 -16.25120 -15.78994 -15.45083 -15.20808 -14.71764 -14.65154 -14.49619 -13.82917 -13.66212 -13.50378 -13.39124 -13.15015 -12.83459 -12.38503 -12.27402 -11.85988 -11.67021 -11.39098 -11.03165 -10.82077 -10.24781 -9.23358 -9.05281 -8.20975 -6.67971 -0.75513 0.70577 0.86117 0.87078 1.36366 1.41754 1.45191 1.46967 1.88892 2.07769 2.12943 2.41350 2.58224 3.42034 3.50334 3.57150 4.23926 4.31643 4.44395 4.62918 4.76245 4.94269 5.06049 5.12978 5.24821 5.51794 5.64588 5.84448 6.06591 6.19655 6.43660 6.47835 6.61003 6.94590 8.02118 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.017242 B = 0.010454 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.557964 B = 2677.759777 C = 4161.826317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C 0.309 3.691 3 C -0.186 4.186 4 C -0.033 4.033 5 C -0.183 4.183 6 C -0.066 4.066 7 C -0.046 4.046 8 C -0.325 4.325 9 C 0.421 3.579 10 O -0.500 6.500 11 S 0.199 5.801 12 C -0.168 4.168 13 C 0.168 3.832 14 C -0.482 4.482 15 H 0.077 0.923 16 C 0.050 3.950 17 N -0.769 5.769 18 Si 0.954 3.046 19 H -0.242 1.242 20 H -0.260 1.260 21 H -0.269 1.269 22 H 0.134 0.866 23 H 0.141 0.859 24 H 0.152 0.848 25 H 0.143 0.857 26 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.668 -2.238 1.546 8.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.205 5.205 2 C 0.000 4.000 3 C -0.196 4.196 4 C -0.054 4.054 5 C -0.205 4.205 6 C -0.075 4.075 7 C -0.082 4.082 8 C -0.442 4.442 9 C 0.284 3.716 10 O -0.378 6.378 11 S 0.472 5.528 12 C -0.287 4.287 13 C 0.160 3.840 14 C -0.510 4.510 15 H 0.095 0.905 16 C -0.173 4.173 17 N -0.393 5.393 18 Si 0.774 3.226 19 H -0.166 1.166 20 H -0.183 1.183 21 H -0.194 1.194 22 H 0.152 0.848 23 H 0.159 0.841 24 H 0.169 0.831 25 H 0.159 0.841 26 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.448 -2.419 2.904 7.474 hybrid contribution -0.257 0.316 -0.795 0.894 sum 6.192 -2.103 2.108 6.870 Atomic orbital electron populations 1.81008 1.13159 1.15165 1.11123 1.25819 0.92758 0.90839 0.90613 1.16046 0.83322 1.21498 0.98702 1.20312 0.94006 0.95570 0.95561 1.20334 0.92790 1.10041 0.97304 1.18501 0.92592 1.01592 0.94808 1.20808 0.93877 0.96373 0.97100 1.24646 1.02500 1.16173 1.00923 1.22357 0.84385 0.71313 0.93590 1.90522 1.51829 1.39646 1.55804 1.83519 0.91226 1.66079 1.12015 1.23291 0.97378 1.10870 0.97124 1.16889 0.88724 0.86508 0.91896 1.19635 1.10615 1.29549 0.91211 0.90495 1.26550 0.93611 0.94020 1.03113 1.69653 1.21777 1.17428 1.30407 0.85555 0.80320 0.79948 0.76758 1.16550 1.18348 1.19381 0.84791 0.84112 0.83083 0.84134 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -24.89 18.54 19.00 0.35 -24.54 15 2 C 0.31 14.17 14.26 88.33 1.26 15.43 15 3 C -0.19 -8.17 5.80 -20.78 -0.12 -8.29 15 4 C -0.03 -1.21 9.62 22.10 0.21 -1.00 15 5 C -0.18 -6.43 9.99 22.70 0.23 -6.21 15 6 C -0.07 -2.54 5.86 -21.45 -0.13 -2.66 15 7 C -0.05 -1.59 9.80 22.06 0.22 -1.37 15 8 C -0.32 -10.61 6.18 22.48 0.14 -10.47 15 9 C 0.42 11.59 11.47 68.71 0.79 12.38 15 10 O -0.50 -16.53 17.45 -3.35 -0.06 -16.59 15 11 S 0.20 7.22 19.84 -56.49 -1.12 6.10 15 12 C -0.17 -7.19 5.76 23.68 0.14 -7.05 15 13 C 0.17 7.79 5.40 -20.90 -0.11 7.68 15 14 C -0.48 -22.83 8.12 23.26 0.19 -22.64 15 15 H 0.08 3.79 7.65 -2.91 -0.02 3.76 15 16 C 0.05 2.13 4.26 85.40 0.36 2.49 15 17 N -0.77 -33.15 10.67 21.91 0.23 -32.91 15 18 Si 0.95 33.19 29.61 68.60 2.03 35.22 15 19 H -0.24 -7.79 7.11 99.48 0.71 -7.08 15 20 H -0.26 -8.51 7.11 99.48 0.71 -7.80 15 21 H -0.27 -9.89 7.11 99.48 0.71 -9.18 15 22 H 0.13 4.13 8.06 -2.91 -0.02 4.10 15 23 H 0.14 3.95 8.06 -2.91 -0.02 3.93 15 24 H 0.15 4.66 7.92 -2.91 -0.02 4.64 15 25 H 0.14 2.63 8.06 -2.91 -0.02 2.61 15 26 H 0.31 11.72 8.29 -92.71 -0.77 10.95 15 Total: -1.00 -54.36 261.98 5.85 -48.51 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.24 Total: 5.93 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 3.17 Total: -21.72 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.59 Total: -57.45 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.06 Total: -16.59 kcal Atomic # 14 Polarization: 33.19 SS G_CDS: 2.03 Total: 35.22 kcal Atomic # 16 Polarization: 7.22 SS G_CDS: -1.12 Total: 6.10 kcal Total: -54.36 5.85 -48.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396283471.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.925 kcal (2) G-P(sol) polarization free energy of solvation -54.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds