Wall clock time and date at job start Mon Mar 30 2020 06:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39351 * 119.79331 * 76.25245 * 3 2 1 5 5 C 1.37751 * 120.25684 * 179.71993 * 4 3 2 6 6 C 1.39389 * 120.27128 * 0.27997 * 5 4 3 7 7 C 1.46901 * 119.87468 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99928 * 354.19095 * 7 6 5 9 9 C 1.42073 * 120.25288 * 359.97097 * 6 5 4 10 10 C 1.46307 * 129.51022 * 180.02562 * 9 6 5 11 11 C 1.40945 * 123.28544 * 359.97438 * 10 9 6 12 12 H 1.07995 * 119.99588 * 318.97507 * 11 10 9 13 13 C 1.39720 * 120.00019 * 138.97863 * 11 10 9 14 14 N 1.31061 * 120.00281 * 4.63944 * 13 11 10 15 15 Si 1.86800 * 119.99816 * 184.63638 * 13 11 10 16 16 H 1.48504 * 109.46859 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46966 * 120.00051 * 15 13 11 18 18 H 1.48494 * 109.47468 * 239.99903 * 15 13 11 19 19 C 1.36603 * 113.43141 * 180.02562 * 10 9 6 20 20 S 1.69998 * 111.88125 * 359.97438 * 19 10 9 21 21 C 1.39236 * 119.18196 * 0.02882 * 9 6 5 22 22 H 1.08002 * 119.87179 * 359.97438 * 4 3 2 23 23 H 1.08001 * 119.85980 * 180.29132 * 5 4 3 24 24 H 1.08000 * 120.00033 * 174.18681 * 7 6 5 25 25 H 0.96997 * 120.00201 * 179.97438 * 14 13 11 26 26 H 1.07998 * 124.05672 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2605 -0.2864 -1.1747 5 6 4.6380 -0.2828 -1.1869 6 6 5.3502 0.0023 -0.0231 7 6 6.8191 0.0032 -0.0459 8 8 7.4103 -0.3459 -1.0458 9 6 4.6611 0.2920 1.1850 10 6 5.1966 0.6154 2.5076 11 6 6.5762 0.6890 2.7866 12 1 7.2517 -0.0417 2.3670 13 6 7.0698 1.7073 3.6061 14 7 6.2414 2.5393 4.1887 15 14 8.9105 1.8829 3.8716 16 1 9.6236 0.8276 3.1080 17 1 9.3533 3.2195 3.3997 18 1 9.2178 1.7417 5.3175 19 6 4.2291 0.8378 3.4459 20 16 2.6668 0.6730 2.7963 21 6 3.2687 0.2867 1.1904 22 1 2.7151 -0.5086 -2.0800 23 1 5.1682 -0.5016 -2.1020 24 1 7.3725 0.3147 0.8276 25 1 6.5841 3.2459 4.7579 26 1 4.4323 1.0890 4.4764 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396284086.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:01 Heat of formation + Delta-G solvation = 30.639024 kcal Electronic energy + Delta-G solvation = -15545.218890 eV Core-core repulsion = 12873.320988 eV Total energy + Delta-G solvation = -2671.897903 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.56948 -37.87745 -36.38981 -35.07029 -32.58319 -31.17157 -28.75416 -26.87304 -24.51212 -22.81961 -21.20599 -20.17616 -18.61283 -16.97136 -16.66499 -15.49941 -15.19309 -14.88211 -14.22227 -14.08648 -13.97700 -13.49473 -13.39817 -13.10725 -12.45213 -12.40088 -12.10834 -11.68078 -11.48278 -11.35563 -11.09915 -10.87477 -10.42794 -10.29970 -9.84027 -9.48807 -8.96789 -8.83380 -7.81677 -6.92977 -6.83259 -4.63243 0.53305 1.52964 2.34999 2.48231 2.84459 2.86428 3.02560 3.05483 3.29006 3.36384 3.63979 3.86640 4.12362 4.27082 4.81051 4.93055 5.13514 5.39823 5.66281 5.78018 5.96022 6.23574 6.36051 6.49086 6.62706 6.97850 7.04234 7.33153 7.64269 7.65646 7.92302 8.10667 8.47542 8.65973 10.15993 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.021861 B = 0.008546 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.516712 B = 3275.741015 C = 4466.329741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.261 3.739 3 C 0.016 3.984 4 C -0.085 4.085 5 C -0.085 4.085 6 C -0.119 4.119 7 C 0.370 3.630 8 O -0.482 6.482 9 C -0.016 4.016 10 C 0.076 3.924 11 C -0.461 4.461 12 H 0.086 0.914 13 C 0.074 3.926 14 N -0.807 5.807 15 Si 0.909 3.091 16 H -0.259 1.259 17 H -0.273 1.273 18 H -0.273 1.273 19 C -0.305 4.305 20 S 0.076 5.924 21 C -0.128 4.128 22 H 0.133 0.867 23 H 0.138 0.862 24 H 0.141 0.859 25 H 0.279 0.721 26 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.137 -2.268 -3.865 4.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.053 4.053 3 C 0.006 3.994 4 C -0.108 4.108 5 C -0.107 4.107 6 C -0.123 4.123 7 C 0.231 3.769 8 O -0.357 6.357 9 C -0.027 4.027 10 C 0.067 3.933 11 C -0.495 4.495 12 H 0.104 0.896 13 C -0.142 4.142 14 N -0.434 5.434 15 Si 0.733 3.267 16 H -0.182 1.182 17 H -0.198 1.198 18 H -0.199 1.199 19 C -0.441 4.441 20 S 0.341 5.659 21 C -0.246 4.246 22 H 0.151 0.849 23 H 0.156 0.844 24 H 0.157 0.843 25 H 0.090 0.910 26 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.979 -2.068 -3.459 5.012 hybrid contribution 2.491 0.303 -0.182 2.516 sum -0.488 -1.765 -3.641 4.076 Atomic orbital electron populations 1.81160 1.11944 1.09322 1.07775 1.25780 0.92733 0.93457 0.93372 1.15426 0.83555 1.06885 0.93552 1.20757 0.94140 1.00059 0.95813 1.21015 0.93130 0.98482 0.98106 1.20898 0.96779 1.01839 0.92742 1.25272 0.88904 0.71424 0.91303 1.90422 1.72391 1.36489 1.36424 1.19938 0.90744 0.97167 0.94832 1.17247 0.94776 0.95223 0.86030 1.18952 0.91223 1.11617 1.27689 0.89642 1.25722 1.00095 0.94714 0.93693 1.69822 1.36279 1.13842 1.23464 0.86227 0.82005 0.79339 0.79112 1.18216 1.19796 1.19851 1.24661 0.92129 1.23345 1.03952 1.82377 1.11431 1.73648 0.98453 1.22645 0.96976 1.07088 0.97878 0.84919 0.84447 0.84329 0.90981 0.82128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.59 18.54 41.84 0.78 -6.82 15 2 C 0.26 4.41 15.01 -22.47 -0.34 4.07 15 3 C 0.02 0.26 5.76 -106.49 -0.61 -0.35 15 4 C -0.09 -1.22 9.69 -39.35 -0.38 -1.60 15 5 C -0.09 -1.31 9.54 -39.33 -0.38 -1.69 15 6 C -0.12 -2.16 5.91 -104.49 -0.62 -2.77 15 7 C 0.37 6.69 10.86 34.24 0.37 7.06 15 8 O -0.48 -9.23 17.13 5.55 0.10 -9.13 15 9 C -0.02 -0.32 6.02 -104.81 -0.63 -0.95 15 10 C 0.08 1.72 5.53 -106.22 -0.59 1.13 15 11 C -0.46 -10.35 7.33 -38.00 -0.28 -10.63 15 12 H 0.09 1.78 5.86 -52.49 -0.31 1.47 15 13 C 0.07 1.65 5.45 -17.33 -0.09 1.56 15 14 N -0.81 -19.11 11.38 55.54 0.63 -18.48 15 15 Si 0.91 17.04 29.56 -169.99 -5.03 12.02 15 16 H -0.26 -4.72 7.11 56.52 0.40 -4.31 15 17 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 18 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 19 C -0.31 -6.89 9.48 30.14 0.29 -6.60 15 20 S 0.08 1.49 22.63 -107.50 -2.43 -0.94 15 21 C -0.13 -2.46 6.30 -38.14 -0.24 -2.70 15 22 H 0.13 1.46 8.06 -52.49 -0.42 1.04 15 23 H 0.14 1.87 7.61 -52.49 -0.40 1.47 15 24 H 0.14 2.53 4.37 -52.49 -0.23 2.30 15 25 H 0.28 6.13 8.30 -40.82 -0.34 5.79 15 26 H 0.16 3.85 7.07 -52.49 -0.37 3.48 15 LS Contribution 258.71 15.07 3.90 3.90 Total: -1.00 -24.75 258.71 -6.42 -31.17 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -0.86 Total: 1.74 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -3.50 Total: -13.47 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 1.41 Total: -25.29 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.10 Total: -9.13 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.02 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.43 Total: -0.94 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -24.75 -6.42 -31.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396284086.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.811 kcal (2) G-P(sol) polarization free energy of solvation -24.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds