Wall clock time and date at job start Mon Mar 30 2020 06:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39351 * 119.79331 * 76.25245 * 3 2 1 5 5 C 1.37751 * 120.25684 * 179.71993 * 4 3 2 6 6 C 1.39389 * 120.27128 * 0.27997 * 5 4 3 7 7 C 1.46901 * 119.87468 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99928 * 354.19095 * 7 6 5 9 9 C 1.42073 * 120.25288 * 359.97097 * 6 5 4 10 10 C 1.46307 * 129.51022 * 180.02562 * 9 6 5 11 11 C 1.40945 * 123.28544 * 359.97438 * 10 9 6 12 12 H 1.07995 * 119.99588 * 318.97507 * 11 10 9 13 13 C 1.39720 * 120.00019 * 138.97863 * 11 10 9 14 14 N 1.31061 * 120.00281 * 4.63944 * 13 11 10 15 15 Si 1.86800 * 119.99816 * 184.63638 * 13 11 10 16 16 H 1.48504 * 109.46859 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46966 * 120.00051 * 15 13 11 18 18 H 1.48494 * 109.47468 * 239.99903 * 15 13 11 19 19 C 1.36603 * 113.43141 * 180.02562 * 10 9 6 20 20 S 1.69998 * 111.88125 * 359.97438 * 19 10 9 21 21 C 1.39236 * 119.18196 * 0.02882 * 9 6 5 22 22 H 1.08002 * 119.87179 * 359.97438 * 4 3 2 23 23 H 1.08001 * 119.85980 * 180.29132 * 5 4 3 24 24 H 1.08000 * 120.00033 * 174.18681 * 7 6 5 25 25 H 0.96997 * 120.00201 * 179.97438 * 14 13 11 26 26 H 1.07998 * 124.05672 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2605 -0.2864 -1.1747 5 6 4.6380 -0.2828 -1.1869 6 6 5.3502 0.0023 -0.0231 7 6 6.8191 0.0032 -0.0459 8 8 7.4103 -0.3459 -1.0458 9 6 4.6611 0.2920 1.1850 10 6 5.1966 0.6154 2.5076 11 6 6.5762 0.6890 2.7866 12 1 7.2517 -0.0417 2.3670 13 6 7.0698 1.7073 3.6061 14 7 6.2414 2.5393 4.1887 15 14 8.9105 1.8829 3.8716 16 1 9.6236 0.8276 3.1080 17 1 9.3533 3.2195 3.3997 18 1 9.2178 1.7417 5.3175 19 6 4.2291 0.8378 3.4459 20 16 2.6668 0.6730 2.7963 21 6 3.2687 0.2867 1.1904 22 1 2.7151 -0.5086 -2.0800 23 1 5.1682 -0.5016 -2.1020 24 1 7.3725 0.3147 0.8276 25 1 6.5841 3.2459 4.7579 26 1 4.4323 1.0890 4.4764 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396284086.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:00 Heat of formation + Delta-G solvation = 19.039565 kcal Electronic energy + Delta-G solvation = -15545.721881 eV Core-core repulsion = 12873.320988 eV Total energy + Delta-G solvation = -2672.400893 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.99717 -39.32378 -37.82995 -36.58976 -34.18691 -32.56752 -30.26238 -28.47659 -26.01726 -24.28161 -22.61774 -21.72283 -20.09750 -18.55100 -18.12824 -16.99999 -16.70477 -16.34913 -15.62991 -15.51730 -15.44686 -14.91950 -14.79743 -14.59347 -13.93159 -13.85945 -13.48052 -13.22960 -12.97609 -12.94663 -12.61716 -12.36544 -11.92846 -11.76747 -11.41670 -11.07362 -10.50836 -10.27523 -9.32170 -8.55018 -8.48432 -6.36169 -0.85782 0.11482 0.86066 1.09906 1.34076 1.46805 1.49554 1.59580 1.74262 1.79190 2.17653 2.29672 2.75623 2.82038 3.20607 3.49396 3.86525 4.04473 4.30241 4.39063 4.62077 4.86720 4.94597 5.10962 5.24744 5.35088 5.50790 5.75139 5.95212 6.31124 6.38801 6.50671 6.80739 6.95158 8.49513 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.021861 B = 0.008546 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.516712 B = 3275.741015 C = 4466.329741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.274 3.726 3 C 0.015 3.985 4 C -0.055 4.055 5 C -0.070 4.070 6 C -0.128 4.128 7 C 0.377 3.623 8 O -0.491 6.491 9 C -0.038 4.038 10 C 0.060 3.940 11 C -0.478 4.478 12 H 0.097 0.903 13 C 0.035 3.965 14 N -0.844 5.844 15 Si 0.971 3.029 16 H -0.247 1.247 17 H -0.273 1.273 18 H -0.275 1.275 19 C -0.333 4.333 20 S 0.081 5.919 21 C -0.137 4.137 22 H 0.181 0.819 23 H 0.166 0.834 24 H 0.136 0.864 25 H 0.281 0.719 26 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.102 -3.037 -6.373 7.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.040 4.040 3 C 0.005 3.995 4 C -0.077 4.077 5 C -0.091 4.091 6 C -0.132 4.132 7 C 0.239 3.761 8 O -0.367 6.367 9 C -0.049 4.049 10 C 0.051 3.949 11 C -0.512 4.512 12 H 0.115 0.885 13 C -0.178 4.178 14 N -0.472 5.472 15 Si 0.793 3.207 16 H -0.170 1.170 17 H -0.198 1.198 18 H -0.200 1.200 19 C -0.469 4.469 20 S 0.346 5.654 21 C -0.255 4.255 22 H 0.198 0.802 23 H 0.184 0.816 24 H 0.152 0.848 25 H 0.091 0.909 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.750 -2.851 -5.977 7.170 hybrid contribution 2.347 0.489 0.477 2.445 sum -0.403 -2.361 -5.500 5.999 Atomic orbital electron populations 1.81189 1.12399 1.09853 1.08239 1.25671 0.92518 0.92941 0.92909 1.15539 0.83469 1.06989 0.93488 1.21264 0.93780 0.96405 0.96250 1.21383 0.93609 0.96248 0.97837 1.20980 0.96787 1.02424 0.93002 1.25139 0.89076 0.70878 0.90965 1.90418 1.72556 1.37094 1.36623 1.19841 0.91301 0.99072 0.94686 1.17605 0.95087 0.94923 0.87317 1.19296 0.91703 1.12079 1.28082 0.88531 1.26516 1.03855 0.94295 0.93113 1.69929 1.38077 1.14679 1.24522 0.85289 0.77286 0.79347 0.78801 1.17003 1.19811 1.20016 1.24499 0.94081 1.25001 1.03273 1.82100 1.09667 1.74353 0.99321 1.22749 0.96892 1.07751 0.98128 0.80220 0.81647 0.84797 0.90857 0.84684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.72 18.54 19.00 0.35 -14.37 15 2 C 0.27 8.52 15.01 88.33 1.33 9.85 15 3 C 0.01 0.46 5.76 -21.07 -0.12 0.34 15 4 C -0.05 -1.30 9.69 22.42 0.22 -1.08 15 5 C -0.07 -1.83 9.54 22.43 0.21 -1.62 15 6 C -0.13 -4.38 5.91 -19.78 -0.12 -4.50 15 7 C 0.38 13.04 10.86 70.09 0.76 13.81 15 8 O -0.49 -17.60 17.13 -3.06 -0.05 -17.65 15 9 C -0.04 -1.54 6.02 -19.99 -0.12 -1.66 15 10 C 0.06 2.78 5.53 -20.90 -0.12 2.66 15 11 C -0.48 -21.85 7.33 23.29 0.17 -21.68 15 12 H 0.10 4.04 5.86 -2.91 -0.02 4.02 15 13 C 0.03 1.59 5.45 85.17 0.46 2.05 15 14 N -0.84 -41.50 11.38 21.80 0.25 -41.25 15 15 Si 0.97 35.12 29.56 68.60 2.03 37.15 15 16 H -0.25 -8.38 7.11 99.48 0.71 -7.67 15 17 H -0.27 -9.80 7.11 99.48 0.71 -9.10 15 18 H -0.27 -9.93 7.11 99.48 0.71 -9.22 15 19 C -0.33 -15.73 9.48 67.44 0.64 -15.09 15 20 S 0.08 3.26 22.63 -56.49 -1.28 1.98 15 21 C -0.14 -5.16 6.30 23.20 0.15 -5.01 15 22 H 0.18 2.69 8.06 -2.91 -0.02 2.67 15 23 H 0.17 3.56 7.61 -2.91 -0.02 3.54 15 24 H 0.14 4.80 4.37 -2.91 -0.01 4.78 15 25 H 0.28 12.83 8.30 -92.71 -0.77 12.06 15 26 H 0.14 6.96 7.07 -2.91 -0.02 6.94 15 Total: -1.00 -54.06 258.71 6.02 -48.04 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 1.26 Total: 8.03 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 3.46 Total: -21.93 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.60 Total: -55.62 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.05 Total: -17.65 kcal Atomic # 14 Polarization: 35.12 SS G_CDS: 2.03 Total: 37.15 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.28 Total: 1.98 kcal Total: -54.06 6.02 -48.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396284086.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.082 kcal (2) G-P(sol) polarization free energy of solvation -54.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds