Wall clock time and date at job start Mon Mar 30 2020 06:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38807 * 119.78443 * 129.19342 * 3 2 1 5 5 C 1.41466 * 120.65088 * 180.29576 * 4 3 2 6 6 C 1.39976 * 128.32499 * 179.97438 * 5 4 3 7 7 C 1.36857 * 115.03883 * 180.02562 * 6 5 4 8 8 C 1.39871 * 124.80149 * 180.02562 * 7 6 5 9 9 H 1.08006 * 119.99967 * 353.27163 * 8 7 6 10 10 C 1.40227 * 120.00267 * 173.27424 * 8 7 6 11 11 N 1.30732 * 119.99868 * 6.60411 * 10 8 7 12 12 Si 1.86796 * 120.00085 * 186.61098 * 10 8 7 13 13 H 1.48491 * 109.47460 * 94.98328 * 12 10 8 14 14 H 1.48503 * 109.47081 * 214.98411 * 12 10 8 15 15 H 1.48499 * 109.47272 * 334.98064 * 12 10 8 16 16 S 1.75435 * 110.39707 * 359.97438 * 7 6 5 17 17 C 1.40505 * 118.86431 * 359.97438 * 5 4 3 18 18 C 1.41484 * 119.94617 * 359.97438 * 17 5 4 19 19 C 1.46737 * 119.89199 * 180.02562 * 18 17 5 20 20 O 1.21315 * 119.99757 * 0.02562 * 19 18 17 21 21 C 1.39223 * 120.21682 * 0.02562 * 18 17 5 22 22 H 1.07995 * 119.67809 * 0.27638 * 4 3 2 23 23 H 1.07995 * 122.48615 * 359.97398 * 6 5 4 24 24 H 0.97003 * 120.00103 * 180.02562 * 11 10 8 25 25 H 1.07999 * 119.99948 * 180.02562 * 19 18 17 26 26 H 1.08000 * 120.04801 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2571 0.7623 -0.9337 5 6 4.6716 0.7715 -0.9542 6 6 5.5226 1.4730 -1.8163 7 6 6.8592 1.2820 -1.5927 8 6 7.8856 1.8811 -2.3303 9 1 7.6503 2.4621 -3.2099 10 6 9.2200 1.7274 -1.9279 11 7 9.5169 0.9213 -0.9425 12 14 10.5735 2.6748 -2.7997 13 1 10.8629 3.9250 -2.0526 14 1 11.8003 1.8403 -2.8625 15 1 10.1333 3.0120 -4.1773 16 16 7.1032 0.1806 -0.2491 17 6 5.3687 -0.0036 -0.0122 18 6 4.6548 -0.7748 0.9350 19 6 5.3840 -1.5834 1.9186 20 8 6.5972 -1.5896 1.9189 21 6 3.2625 -0.7689 0.9369 22 1 2.7081 1.3533 -1.6517 23 1 5.1520 2.1165 -2.6004 24 1 10.4400 0.8153 -0.6638 25 1 4.8408 -2.1731 2.6422 26 1 2.7203 -1.3583 1.6615 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396284118.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:06 Heat of formation + Delta-G solvation = -1.824171 kcal Electronic energy + Delta-G solvation = -15193.868662 eV Core-core repulsion = 12520.563050 eV Total energy + Delta-G solvation = -2673.305613 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.56209 -39.25735 -37.67043 -36.58555 -34.92004 -32.24410 -31.06030 -27.40953 -25.88121 -24.56662 -22.79195 -21.23883 -19.66313 -18.70583 -17.90326 -17.34590 -16.55947 -16.24373 -15.49574 -15.44924 -15.37311 -14.74855 -14.63748 -14.52461 -13.89788 -13.78924 -13.46712 -13.37329 -13.15146 -13.02079 -12.33010 -12.02725 -11.98740 -11.90866 -11.12605 -11.06506 -10.39768 -10.27504 -9.32712 -8.92197 -8.37967 -6.57393 -0.33814 0.10167 0.98073 1.34531 1.37834 1.49718 1.54635 1.66807 1.92585 2.00854 2.13972 2.18287 2.89141 2.92732 3.22669 3.55813 4.15508 4.21891 4.57298 4.68598 4.78631 4.89847 5.05296 5.27199 5.34598 5.41080 5.59277 5.83307 5.97150 6.10506 6.40345 6.49555 6.55098 6.69174 7.94349 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.030300 B = 0.006353 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.861953 B = 4406.415255 C = 5316.207510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.294 3.706 3 C -0.039 4.039 4 C -0.063 4.063 5 C -0.019 4.019 6 C -0.385 4.385 7 C 0.003 3.997 8 C -0.411 4.411 9 H 0.103 0.897 10 C 0.017 3.983 11 N -0.798 5.798 12 Si 1.011 2.989 13 H -0.258 1.258 14 H -0.261 1.261 15 H -0.251 1.251 16 S 0.173 5.827 17 C -0.219 4.219 18 C -0.150 4.150 19 C 0.379 3.621 20 O -0.495 6.495 21 C -0.059 4.059 22 H 0.131 0.869 23 H 0.110 0.890 24 H 0.312 0.688 25 H 0.167 0.833 26 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.869 -2.026 2.849 3.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.020 4.020 3 C -0.046 4.046 4 C -0.087 4.087 5 C -0.027 4.027 6 C -0.410 4.410 7 C -0.116 4.116 8 C -0.444 4.444 9 H 0.121 0.879 10 C -0.203 4.203 11 N -0.424 5.424 12 Si 0.829 3.171 13 H -0.183 1.183 14 H -0.185 1.185 15 H -0.175 1.175 16 S 0.436 5.564 17 C -0.337 4.337 18 C -0.156 4.156 19 C 0.240 3.760 20 O -0.371 6.371 21 C -0.081 4.081 22 H 0.149 0.851 23 H 0.128 0.872 24 H 0.126 0.874 25 H 0.183 0.817 26 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.487 -2.686 3.648 4.768 hybrid contribution -0.344 1.200 -1.353 1.841 sum -1.832 -1.486 2.295 3.291 Atomic orbital electron populations 1.81206 1.12684 1.10434 1.09937 1.25593 0.92235 0.92043 0.92103 1.15437 0.83403 1.04454 1.01278 1.21153 0.91695 0.98067 0.97740 1.18010 0.93288 0.96404 0.95024 1.19739 0.91294 1.18371 1.11555 1.22100 0.96350 0.96127 0.97032 1.19678 0.90474 1.24638 1.09598 0.87890 1.27315 1.02876 0.95052 0.95009 1.68679 1.24109 1.27628 1.22004 0.84699 0.75120 0.78073 0.79174 1.18265 1.18479 1.17457 1.85620 0.95460 1.44557 1.30800 1.24581 1.02798 1.04422 1.01858 1.20379 0.94256 1.01898 0.99104 1.24788 0.88798 0.78793 0.83657 1.90550 1.19415 1.58181 1.68926 1.21143 0.91185 0.97986 0.97834 0.85072 0.87233 0.87428 0.81737 0.80569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.81 18.54 19.00 0.35 -14.45 15 2 C 0.29 8.56 15.29 88.33 1.35 9.91 15 3 C -0.04 -1.18 5.71 -21.53 -0.12 -1.30 15 4 C -0.06 -2.25 9.75 23.20 0.23 -2.02 15 5 C -0.02 -0.84 5.84 -21.51 -0.13 -0.97 15 6 C -0.39 -18.61 10.14 22.37 0.23 -18.39 15 7 C 0.00 0.14 6.10 22.34 0.14 0.28 15 8 C -0.41 -20.09 9.26 23.15 0.21 -19.88 15 9 H 0.10 4.74 7.86 -2.91 -0.02 4.72 15 10 C 0.02 0.74 5.49 85.34 0.47 1.21 15 11 N -0.80 -37.39 10.62 21.88 0.23 -37.16 15 12 Si 1.01 33.29 29.57 68.60 2.03 35.31 15 13 H -0.26 -8.26 7.11 99.48 0.71 -7.55 15 14 H -0.26 -8.11 7.11 99.48 0.71 -7.41 15 15 H -0.25 -8.00 7.11 99.48 0.71 -7.30 15 16 S 0.17 8.53 18.22 -56.49 -1.03 7.50 15 17 C -0.22 -9.57 6.35 23.62 0.15 -9.42 15 18 C -0.15 -5.04 5.88 -20.02 -0.12 -5.16 15 19 C 0.38 10.99 11.42 70.04 0.80 11.79 15 20 O -0.50 -19.39 15.73 -3.14 -0.05 -19.44 15 21 C -0.06 -1.57 9.46 22.87 0.22 -1.36 15 22 H 0.13 4.17 8.06 -2.91 -0.02 4.15 15 23 H 0.11 5.07 8.06 -2.91 -0.02 5.04 15 24 H 0.31 12.99 8.29 -92.71 -0.77 12.22 15 25 H 0.17 2.55 8.06 -2.91 -0.02 2.53 15 26 H 0.18 2.92 8.06 -2.91 -0.02 2.90 15 Total: -1.00 -60.42 263.08 6.19 -54.23 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.24 Total: 9.30 kcal Atomic # 6 Polarization: -38.71 SS G_CDS: 3.42 Total: -35.29 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.58 Total: -51.61 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 33.29 SS G_CDS: 2.03 Total: 35.31 kcal Atomic # 16 Polarization: 8.53 SS G_CDS: -1.03 Total: 7.50 kcal Total: -60.42 6.19 -54.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396284118.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.404 kcal (2) G-P(sol) polarization free energy of solvation -60.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds