Wall clock time and date at job start Mon Mar 30 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.38854 * 123.25500 * 256.39427 * 3 2 1 5 5 C 1.39091 * 124.65224 * 0.02562 * 4 3 2 6 6 H 1.08005 * 119.99889 * 353.13604 * 5 4 3 7 7 C 1.40673 * 120.00155 * 173.13172 * 5 4 3 8 8 N 1.30468 * 120.00242 * 6.59346 * 7 5 4 9 9 Si 1.86798 * 120.00087 * 186.58836 * 7 5 4 10 10 H 1.48507 * 109.47118 * 94.99075 * 9 7 5 11 11 H 1.48501 * 109.47431 * 214.98971 * 9 7 5 12 12 H 1.48503 * 109.47311 * 334.99502 * 9 7 5 13 13 S 1.75200 * 110.70363 * 180.02562 * 4 3 2 14 14 C 1.75836 * 92.73507 * 0.02562 * 13 4 3 15 15 C 1.39863 * 110.75182 * 359.97438 * 14 13 4 16 16 C 1.41313 * 119.04924 * 179.97438 * 15 14 13 17 17 C 1.37451 * 120.80336 * 359.97438 * 16 15 14 18 18 C 1.38250 * 120.60667 * 359.77080 * 17 16 15 19 19 C 1.39535 * 120.02771 * 0.50170 * 18 17 16 20 20 C 1.46684 * 119.96994 * 179.75240 * 19 18 17 21 21 O 1.21318 * 120.00077 * 359.72081 * 20 19 18 22 22 H 0.97000 * 120.00340 * 179.97438 * 8 7 5 23 23 H 1.07992 * 119.60142 * 180.02562 * 16 15 14 24 24 H 1.07999 * 119.69759 * 180.02562 * 17 16 15 25 25 H 1.07997 * 119.98120 * 180.25524 * 18 17 16 26 26 H 1.07996 * 120.00432 * 179.45852 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3294 0.2741 1.1286 5 6 2.8061 0.5766 2.3813 6 1 1.7424 0.7199 2.5020 7 6 3.6622 0.6957 3.4911 8 7 4.9555 0.6506 3.3252 9 14 2.9475 0.9186 5.2025 10 1 2.8439 -0.4030 5.8717 11 1 3.8328 1.8076 5.9969 12 1 1.5973 1.5284 5.0995 13 16 5.0395 0.1860 0.7583 14 6 4.7399 -0.2206 -0.9259 15 6 3.3667 -0.2844 -1.1836 16 6 2.9275 -0.5993 -2.4893 17 6 3.8309 -0.8402 -3.4969 18 6 5.1903 -0.7745 -3.2540 19 6 5.6572 -0.4717 -1.9744 20 6 7.0998 -0.4077 -1.7168 21 8 7.8865 -0.6230 -2.6149 22 1 5.5459 0.7332 4.0904 23 1 1.8693 -0.6506 -2.6983 24 1 3.4755 -1.0790 -4.4884 25 1 5.8911 -0.9616 -4.0541 26 1 7.4617 -0.1648 -0.7288 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396284197.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:53 Heat of formation + Delta-G solvation = 0.414167 kcal Electronic energy + Delta-G solvation = -15307.680820 eV Core-core repulsion = 12634.472269 eV Total energy + Delta-G solvation = -2673.208551 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.10677 -37.73683 -35.82839 -34.79834 -33.15225 -30.66331 -29.57509 -26.20829 -24.43313 -22.83090 -21.03530 -20.42889 -18.42731 -16.75880 -16.27979 -15.90678 -15.43419 -14.56261 -14.36252 -13.89543 -13.75690 -13.46352 -12.99537 -12.91138 -12.20831 -11.99051 -11.88974 -11.84117 -11.80843 -11.22129 -10.90496 -10.73083 -10.61530 -10.34422 -9.78753 -9.66120 -9.21138 -8.73703 -7.93365 -7.66847 -6.79676 -5.23206 1.11124 1.94748 2.29113 2.63286 2.70017 2.73561 2.81972 3.08299 3.18388 3.38927 4.02879 4.08821 4.32066 4.76128 4.97032 5.42279 5.55510 5.67539 5.82262 5.94578 6.13254 6.19908 6.39888 6.66661 6.78360 6.93618 7.04107 7.21359 7.39008 7.55491 7.70920 7.82131 7.90532 8.93278 9.14002 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.007988 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.529980 B = 3504.309997 C = 4743.325239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C 0.322 3.678 3 C -0.301 4.301 4 C 0.079 3.921 5 C -0.347 4.347 6 H 0.107 0.893 7 C 0.056 3.944 8 N -0.747 5.747 9 Si 0.942 3.058 10 H -0.258 1.258 11 H -0.265 1.265 12 H -0.251 1.251 13 S 0.173 5.827 14 C -0.193 4.193 15 C 0.027 3.973 16 C -0.105 4.105 17 C -0.127 4.127 18 C -0.103 4.103 19 C -0.144 4.144 20 C 0.387 3.613 21 O -0.479 6.479 22 H 0.312 0.688 23 H 0.110 0.890 24 H 0.115 0.885 25 H 0.122 0.878 26 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.117 0.060 0.958 4.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.211 5.211 2 C 0.013 3.987 3 C -0.313 4.313 4 C -0.044 4.044 5 C -0.380 4.380 6 H 0.125 0.875 7 C -0.171 4.171 8 N -0.371 5.371 9 Si 0.764 3.236 10 H -0.182 1.182 11 H -0.189 1.189 12 H -0.174 1.174 13 S 0.434 5.566 14 C -0.308 4.308 15 C 0.019 3.981 16 C -0.125 4.125 17 C -0.147 4.147 18 C -0.123 4.123 19 C -0.150 4.150 20 C 0.248 3.752 21 O -0.355 6.355 22 H 0.126 0.874 23 H 0.128 0.872 24 H 0.133 0.867 25 H 0.140 0.860 26 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.286 0.171 1.445 4.526 hybrid contribution -1.246 -0.128 -0.105 1.256 sum 3.041 0.043 1.341 3.323 Atomic orbital electron populations 1.81040 1.12381 1.17748 1.09960 1.25003 0.91710 0.90449 0.91509 1.15235 0.84208 1.38046 0.93770 1.21260 0.95006 0.93327 0.94785 1.19587 0.96976 1.31364 0.90076 0.87467 1.26564 0.94392 0.91828 1.04310 1.68423 1.04389 1.28190 1.36058 0.85640 0.80612 0.80141 0.77235 1.18185 1.18925 1.17440 1.84878 1.04196 1.73940 0.93610 1.23915 0.95925 1.08483 1.02458 1.18538 0.91023 0.96292 0.92288 1.21021 0.98886 1.00818 0.91789 1.20600 0.92978 1.02688 0.98444 1.20945 0.95345 1.00543 0.95460 1.19988 0.94186 1.07340 0.93533 1.23928 0.87901 0.70808 0.92578 1.90454 1.58857 1.37308 1.48835 0.87369 0.87185 0.86657 0.86043 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.78 18.54 41.84 0.78 -12.01 15 2 C 0.32 7.58 14.54 -22.47 -0.33 7.25 15 3 C -0.30 -6.87 5.95 -104.81 -0.62 -7.50 15 4 C 0.08 1.76 6.12 -39.04 -0.24 1.52 15 5 C -0.35 -7.53 8.90 -38.35 -0.34 -7.87 15 6 H 0.11 2.35 7.40 -52.48 -0.39 1.96 15 7 C 0.06 1.07 5.50 -17.21 -0.09 0.98 15 8 N -0.75 -14.32 10.58 55.59 0.59 -13.73 15 9 Si 0.94 14.71 29.57 -169.99 -5.03 9.69 15 10 H -0.26 -4.02 7.11 56.52 0.40 -3.61 15 11 H -0.26 -3.95 7.11 56.52 0.40 -3.55 15 12 H -0.25 -4.05 7.11 56.52 0.40 -3.65 15 13 S 0.17 3.47 19.39 -107.50 -2.08 1.39 15 14 C -0.19 -3.90 6.34 -37.71 -0.24 -4.14 15 15 C 0.03 0.58 6.00 -105.18 -0.63 -0.05 15 16 C -0.10 -2.02 9.82 -38.70 -0.38 -2.40 15 17 C -0.13 -2.17 9.98 -39.86 -0.40 -2.56 15 18 C -0.10 -1.81 9.58 -39.09 -0.37 -2.19 15 19 C -0.14 -2.69 5.90 -104.74 -0.62 -3.31 15 20 C 0.39 6.60 11.27 34.14 0.38 6.98 15 21 O -0.48 -9.02 17.13 5.52 0.09 -8.93 15 22 H 0.31 5.21 8.29 -40.82 -0.34 4.87 15 23 H 0.11 2.03 8.02 -52.49 -0.42 1.61 15 24 H 0.12 1.61 8.06 -52.49 -0.42 1.19 15 25 H 0.12 1.97 7.61 -52.49 -0.40 1.57 15 26 H 0.10 1.40 7.63 -52.49 -0.40 1.00 15 LS Contribution 263.45 15.07 3.97 3.97 Total: -1.00 -24.78 263.45 -6.73 -31.51 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -1.17 Total: 1.39 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -3.88 Total: -13.29 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 1.36 Total: -25.73 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 14.71 SS G_CDS: -5.03 Total: 9.69 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -2.08 Total: 1.39 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -24.78 -6.73 -31.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396284197.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.929 kcal (2) G-P(sol) polarization free energy of solvation -24.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds