Wall clock time and date at job start Mon Mar 30 2020 06:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.38854 * 123.25500 * 256.39427 * 3 2 1 5 5 C 1.39091 * 124.65224 * 0.02562 * 4 3 2 6 6 H 1.08005 * 119.99889 * 353.13604 * 5 4 3 7 7 C 1.40673 * 120.00155 * 173.13172 * 5 4 3 8 8 N 1.30468 * 120.00242 * 6.59346 * 7 5 4 9 9 Si 1.86798 * 120.00087 * 186.58836 * 7 5 4 10 10 H 1.48507 * 109.47118 * 94.99075 * 9 7 5 11 11 H 1.48501 * 109.47431 * 214.98971 * 9 7 5 12 12 H 1.48503 * 109.47311 * 334.99502 * 9 7 5 13 13 S 1.75200 * 110.70363 * 180.02562 * 4 3 2 14 14 C 1.75836 * 92.73507 * 0.02562 * 13 4 3 15 15 C 1.39863 * 110.75182 * 359.97438 * 14 13 4 16 16 C 1.41313 * 119.04924 * 179.97438 * 15 14 13 17 17 C 1.37451 * 120.80336 * 359.97438 * 16 15 14 18 18 C 1.38250 * 120.60667 * 359.77080 * 17 16 15 19 19 C 1.39535 * 120.02771 * 0.50170 * 18 17 16 20 20 C 1.46684 * 119.96994 * 179.75240 * 19 18 17 21 21 O 1.21318 * 120.00077 * 359.72081 * 20 19 18 22 22 H 0.97000 * 120.00340 * 179.97438 * 8 7 5 23 23 H 1.07992 * 119.60142 * 180.02562 * 16 15 14 24 24 H 1.07999 * 119.69759 * 180.02562 * 17 16 15 25 25 H 1.07997 * 119.98120 * 180.25524 * 18 17 16 26 26 H 1.07996 * 120.00432 * 179.45852 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3294 0.2741 1.1286 5 6 2.8061 0.5766 2.3813 6 1 1.7424 0.7199 2.5020 7 6 3.6622 0.6957 3.4911 8 7 4.9555 0.6506 3.3252 9 14 2.9475 0.9186 5.2025 10 1 2.8439 -0.4030 5.8717 11 1 3.8328 1.8076 5.9969 12 1 1.5973 1.5284 5.0995 13 16 5.0395 0.1860 0.7583 14 6 4.7399 -0.2206 -0.9259 15 6 3.3667 -0.2844 -1.1836 16 6 2.9275 -0.5993 -2.4893 17 6 3.8309 -0.8402 -3.4969 18 6 5.1903 -0.7745 -3.2540 19 6 5.6572 -0.4717 -1.9744 20 6 7.0998 -0.4077 -1.7168 21 8 7.8865 -0.6230 -2.6149 22 1 5.5459 0.7332 4.0904 23 1 1.8693 -0.6506 -2.6983 24 1 3.4755 -1.0790 -4.4884 25 1 5.8911 -0.9616 -4.0541 26 1 7.4617 -0.1648 -0.7288 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396284197.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:52 Heat of formation + Delta-G solvation = -10.664243 kcal Electronic energy + Delta-G solvation = -15308.161216 eV Core-core repulsion = 12634.472269 eV Total energy + Delta-G solvation = -2673.688947 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.55842 -39.23259 -37.47063 -36.48015 -34.73018 -32.12308 -31.12686 -27.79034 -25.91091 -24.35916 -22.55371 -21.95464 -19.96203 -18.28687 -17.83053 -17.32685 -16.89523 -16.04459 -15.83936 -15.35213 -15.18801 -14.98192 -14.65523 -14.37462 -13.80021 -13.60113 -13.51559 -13.42131 -13.24961 -12.82195 -12.39114 -12.11369 -12.02853 -11.87975 -11.34553 -11.12830 -10.65705 -10.25650 -9.49689 -9.15505 -8.35676 -6.88121 -0.34112 0.44119 0.77456 1.12683 1.33772 1.51253 1.52528 1.60540 1.62513 2.07783 2.22399 2.46153 2.79631 3.27543 3.41825 3.87593 4.08574 4.25843 4.35860 4.50185 4.68059 4.69392 4.92070 5.17536 5.27186 5.38636 5.55211 5.66371 5.82299 5.98857 6.15002 6.30278 6.44552 7.12141 7.69914 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.007988 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.529980 B = 3504.309997 C = 4743.325239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C 0.324 3.676 3 C -0.330 4.330 4 C 0.052 3.948 5 C -0.365 4.365 6 H 0.094 0.906 7 C 0.030 3.970 8 N -0.754 5.754 9 Si 1.004 2.996 10 H -0.254 1.254 11 H -0.246 1.246 12 H -0.263 1.263 13 S 0.193 5.807 14 C -0.203 4.203 15 C 0.003 3.997 16 C -0.118 4.118 17 C -0.114 4.114 18 C -0.100 4.100 19 C -0.153 4.153 20 C 0.396 3.604 21 O -0.494 6.494 22 H 0.328 0.672 23 H 0.111 0.889 24 H 0.152 0.848 25 H 0.141 0.859 26 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.544 0.000 1.189 5.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.239 5.239 2 C 0.017 3.983 3 C -0.343 4.343 4 C -0.071 4.071 5 C -0.398 4.398 6 H 0.112 0.888 7 C -0.195 4.195 8 N -0.378 5.378 9 Si 0.821 3.179 10 H -0.178 1.178 11 H -0.169 1.169 12 H -0.187 1.187 13 S 0.454 5.546 14 C -0.318 4.318 15 C -0.005 4.005 16 C -0.138 4.138 17 C -0.134 4.134 18 C -0.120 4.120 19 C -0.160 4.160 20 C 0.258 3.742 21 O -0.371 6.371 22 H 0.143 0.857 23 H 0.129 0.871 24 H 0.170 0.830 25 H 0.159 0.841 26 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.735 0.107 1.649 5.969 hybrid contribution -1.597 -0.118 -0.234 1.618 sum 4.139 -0.012 1.415 4.374 Atomic orbital electron populations 1.81001 1.12853 1.19299 1.10713 1.25291 0.92046 0.90039 0.90948 1.15497 0.83900 1.39891 0.94963 1.21568 0.96597 0.93842 0.95058 1.19769 0.96986 1.31945 0.91064 0.88763 1.27233 0.94538 0.91204 1.06561 1.68367 1.04983 1.26594 1.37820 0.84783 0.79515 0.80304 0.73250 1.17799 1.16911 1.18728 1.84498 1.02360 1.74134 0.93638 1.24024 0.95825 1.08985 1.02940 1.18724 0.91526 0.97446 0.92804 1.21194 0.99575 1.01330 0.91672 1.20964 0.92435 1.00630 0.99407 1.21296 0.95992 0.99153 0.95552 1.20279 0.94962 1.07126 0.93592 1.24125 0.86929 0.69860 0.93276 1.90456 1.58925 1.38135 1.49577 0.85704 0.87075 0.83014 0.84131 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -27.66 18.54 19.01 0.35 -27.31 15 2 C 0.32 15.78 14.54 88.33 1.28 17.06 15 3 C -0.33 -15.53 5.95 -19.98 -0.12 -15.65 15 4 C 0.05 2.36 6.12 22.62 0.14 2.49 15 5 C -0.36 -16.09 8.90 23.07 0.21 -15.88 15 6 H 0.09 4.29 7.40 -2.91 -0.02 4.27 15 7 C 0.03 1.14 5.50 85.49 0.47 1.61 15 8 N -0.75 -27.85 10.58 21.95 0.23 -27.62 15 9 Si 1.00 28.93 29.57 68.60 2.03 30.96 15 10 H -0.25 -7.16 7.11 99.48 0.71 -6.46 15 11 H -0.25 -6.33 7.11 99.48 0.71 -5.62 15 12 H -0.26 -8.07 7.11 99.48 0.71 -7.36 15 13 S 0.19 7.67 19.39 -56.49 -1.10 6.58 15 14 C -0.20 -8.10 6.34 23.48 0.15 -7.95 15 15 C 0.00 0.13 6.00 -20.23 -0.12 0.01 15 16 C -0.12 -4.46 9.82 22.84 0.22 -4.23 15 17 C -0.11 -3.63 9.98 22.09 0.22 -3.41 15 18 C -0.10 -3.27 9.58 22.59 0.22 -3.05 15 19 C -0.15 -5.44 5.90 -19.94 -0.12 -5.56 15 20 C 0.40 12.62 11.27 70.03 0.79 13.41 15 21 O -0.49 -17.45 17.13 -3.15 -0.05 -17.50 15 22 H 0.33 10.21 8.29 -92.71 -0.77 9.44 15 23 H 0.11 4.11 8.02 -2.91 -0.02 4.08 15 24 H 0.15 3.68 8.06 -2.91 -0.02 3.65 15 25 H 0.14 4.08 7.61 -2.91 -0.02 4.06 15 26 H 0.12 3.26 7.63 -2.91 -0.02 3.24 15 Total: -1.00 -52.78 263.45 6.04 -46.74 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.24 Total: 9.30 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 3.34 Total: -21.15 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.58 Total: -54.92 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.05 Total: -17.50 kcal Atomic # 14 Polarization: 28.93 SS G_CDS: 2.03 Total: 30.96 kcal Atomic # 16 Polarization: 7.67 SS G_CDS: -1.10 Total: 6.58 kcal Total: -52.78 6.04 -46.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396284197.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.076 kcal (2) G-P(sol) polarization free energy of solvation -52.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds