Wall clock time and date at job start Mon Mar 30 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.35631 * 123.10451 * 12.07002 * 3 2 1 5 5 S 1.70026 * 111.94896 * 179.84757 * 4 3 2 6 6 C 1.75875 * 93.02448 * 0.35451 * 5 4 3 7 7 C 1.39406 * 130.21912 * 179.82717 * 6 5 4 8 8 C 1.39658 * 121.34221 * 179.97438 * 7 6 5 9 9 C 1.46993 * 119.61959 * 179.97438 * 8 7 6 10 10 O 1.21275 * 120.00127 * 180.02562 * 9 8 7 11 11 C 1.39452 * 120.76034 * 359.97438 * 8 7 6 12 12 C 1.39990 * 119.77948 * 0.02562 * 11 8 7 13 13 C 1.40830 * 120.32841 * 179.97438 * 12 11 8 14 14 H 1.08001 * 119.99152 * 151.46754 * 13 12 11 15 15 C 1.39957 * 120.00057 * 331.46930 * 13 12 11 16 16 N 1.30841 * 120.00089 * 345.42089 * 15 13 12 17 17 Si 1.86799 * 119.99625 * 165.41953 * 15 13 12 18 18 H 1.48498 * 109.47360 * 90.00052 * 17 15 13 19 19 H 1.48503 * 109.47236 * 209.99836 * 17 15 13 20 20 H 1.48501 * 109.47316 * 329.99730 * 17 15 13 21 21 C 1.39551 * 109.87356 * 359.80414 * 6 5 4 22 22 H 1.07998 * 124.02069 * 359.97438 * 4 3 2 23 23 H 1.07990 * 119.32914 * 359.97223 * 7 6 5 24 24 H 1.08002 * 119.99817 * 359.97438 * 9 8 7 25 25 H 1.07995 * 120.11029 * 179.97438 * 11 8 7 26 26 H 0.97001 * 119.99834 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3093 -1.1101 -0.2376 5 16 4.9772 -0.7868 -0.1729 6 6 4.7278 0.9138 0.1999 7 6 5.6538 1.9318 0.4224 8 6 5.2447 3.2363 0.7079 9 6 6.2537 4.2804 0.9368 10 8 5.9062 5.4154 1.1856 11 6 3.8900 3.5597 0.7784 12 6 2.9263 2.5678 0.5616 13 6 1.5551 2.8814 0.6305 14 1 0.8420 2.3154 0.0494 15 6 1.1166 3.9263 1.4518 16 7 1.9152 4.4224 2.3618 17 14 -0.6088 4.6128 1.2488 18 1 -1.5459 3.8634 2.1237 19 1 -0.6182 6.0484 1.6283 20 1 -1.0340 4.4723 -0.1671 21 6 3.3613 1.1906 0.2607 22 1 2.8899 -2.0834 -0.4453 23 1 6.7089 1.7072 0.3731 24 1 7.3045 4.0367 0.8841 25 1 3.5854 4.5717 1.0003 26 1 1.6112 5.1464 2.9313 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396284854.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:25 Heat of formation + Delta-G solvation = 10.975237 kcal Electronic energy + Delta-G solvation = -15581.716891 eV Core-core repulsion = 12908.966302 eV Total energy + Delta-G solvation = -2672.750589 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.38591 -39.31274 -37.53098 -36.18000 -35.11346 -31.86604 -30.53571 -27.42712 -25.94779 -24.65769 -22.95610 -21.46275 -19.68570 -18.54075 -17.67396 -17.18943 -16.80826 -16.44683 -15.83162 -15.24065 -15.17421 -14.92406 -14.74968 -14.16665 -13.94220 -13.72202 -13.71542 -13.37416 -13.09407 -12.98717 -12.36471 -12.27869 -12.01222 -11.72504 -11.36588 -11.23955 -10.53955 -10.03565 -9.28463 -8.86367 -8.51204 -6.42104 -0.44153 0.51963 0.76969 0.79884 1.10129 1.23914 1.26317 1.36631 1.70998 1.78408 2.04883 2.53585 2.61783 3.33005 3.48858 3.64186 3.97087 4.38961 4.54428 4.71789 4.90477 4.96031 5.02557 5.08665 5.24439 5.54471 5.79119 5.84327 5.99656 6.41111 6.57664 6.65449 6.70477 6.78603 8.08715 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.011071 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.459066 B = 2528.512863 C = 4334.315247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.302 3.698 3 C -0.045 4.045 4 C -0.198 4.198 5 S 0.240 5.760 6 C -0.143 4.143 7 C -0.147 4.147 8 C -0.155 4.155 9 C 0.392 3.608 10 O -0.514 6.514 11 C -0.152 4.152 12 C 0.104 3.896 13 C -0.469 4.469 14 H 0.075 0.925 15 C 0.038 3.962 16 N -0.800 5.800 17 Si 0.964 3.036 18 H -0.265 1.265 19 H -0.255 1.255 20 H -0.262 1.262 21 C -0.147 4.147 22 H 0.200 0.800 23 H 0.157 0.843 24 H 0.159 0.841 25 H 0.103 0.897 26 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.939 -7.863 -3.382 12.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.013 4.013 3 C -0.064 4.064 4 C -0.338 4.338 5 S 0.508 5.492 6 C -0.257 4.257 7 C -0.172 4.172 8 C -0.159 4.159 9 C 0.254 3.746 10 O -0.391 6.391 11 C -0.175 4.175 12 C 0.099 3.901 13 C -0.497 4.497 14 H 0.093 0.907 15 C -0.180 4.180 16 N -0.425 5.425 17 Si 0.785 3.215 18 H -0.190 1.190 19 H -0.179 1.179 20 H -0.186 1.186 21 C -0.155 4.155 22 H 0.217 0.783 23 H 0.175 0.825 24 H 0.174 0.826 25 H 0.121 0.879 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.280 -8.063 -3.263 12.009 hybrid contribution -2.281 1.449 0.393 2.731 sum 6.000 -6.614 -2.870 9.380 Atomic orbital electron populations 1.81065 1.12955 1.09984 1.11307 1.25389 0.92507 0.91274 0.92098 1.15992 0.84437 0.94406 1.11549 1.25371 1.00421 1.01947 1.06074 1.82046 0.98913 0.97870 1.70360 1.22565 0.95469 0.99964 1.07729 1.20162 0.98615 0.89657 1.08739 1.20750 0.94803 0.96243 1.04075 1.24775 0.95931 0.85251 0.68608 1.90475 1.86436 1.25354 1.36837 1.21269 0.91892 0.98616 1.05683 1.18505 0.93499 0.88634 0.89418 1.19783 0.93593 1.13958 1.22389 0.90660 1.26627 1.03395 0.95090 0.92860 1.69817 1.38590 1.20765 1.13288 0.85451 0.77339 0.78770 0.79975 1.19012 1.17852 1.18607 1.20124 0.91839 0.92280 1.11233 0.78259 0.82512 0.82567 0.87889 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -21.38 18.15 19.00 0.34 -21.04 15 2 C 0.30 12.82 13.09 88.33 1.16 13.98 15 3 C -0.04 -1.73 5.84 -20.80 -0.12 -1.85 15 4 C -0.20 -5.48 10.66 67.22 0.72 -4.76 15 5 S 0.24 5.82 22.98 -56.49 -1.30 4.52 15 6 C -0.14 -5.05 6.44 22.87 0.15 -4.90 15 7 C -0.15 -4.90 9.74 22.89 0.22 -4.67 15 8 C -0.15 -6.19 5.84 -20.35 -0.12 -6.31 15 9 C 0.39 13.24 11.42 70.12 0.80 14.04 15 10 O -0.51 -22.26 17.10 -3.01 -0.05 -22.31 15 11 C -0.15 -7.65 8.17 22.99 0.19 -7.46 15 12 C 0.10 5.34 5.71 -19.77 -0.11 5.23 15 13 C -0.47 -25.14 8.31 23.32 0.19 -24.94 15 14 H 0.08 4.07 5.66 -2.91 -0.02 4.05 15 15 C 0.04 1.97 5.17 85.26 0.44 2.42 15 16 N -0.80 -42.28 11.04 21.83 0.24 -42.04 15 17 Si 0.96 40.61 29.58 68.60 2.03 42.64 15 18 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 19 H -0.25 -9.95 7.11 99.48 0.71 -9.24 15 20 H -0.26 -11.10 7.11 99.48 0.71 -10.40 15 21 C -0.15 -6.44 6.19 -18.67 -0.12 -6.56 15 22 H 0.20 3.96 8.06 -2.91 -0.02 3.93 15 23 H 0.16 3.60 8.06 -2.92 -0.02 3.57 15 24 H 0.16 3.17 8.06 -2.91 -0.02 3.14 15 25 H 0.10 5.77 5.87 -2.91 -0.02 5.76 15 26 H 0.29 14.17 8.30 -92.71 -0.77 13.40 15 Total: -1.00 -66.07 260.75 5.91 -60.16 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.25 Total: 3.86 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 3.40 Total: -25.79 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: 0.59 Total: -63.08 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -1.30 Total: 4.52 kcal Total: -66.07 5.91 -60.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396284854.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.135 kcal (2) G-P(sol) polarization free energy of solvation -66.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds