Wall clock time and date at job start Mon Mar 30 2020 06:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.35615 * 123.08855 * 344.16658 * 3 2 1 5 5 S 1.70013 * 112.02616 * 179.90950 * 4 3 2 6 6 C 1.75872 * 93.04187 * 0.30267 * 5 4 3 7 7 C 1.38960 * 130.21638 * 179.85217 * 6 5 4 8 8 C 1.40238 * 121.10328 * 179.97438 * 7 6 5 9 9 C 1.41187 * 119.73098 * 180.02562 * 8 7 6 10 10 H 1.07992 * 120.00631 * 25.18849 * 9 8 7 11 11 C 1.39868 * 119.99697 * 205.18886 * 9 8 7 12 12 N 1.30888 * 120.00198 * 18.14939 * 11 9 8 13 13 Si 1.86797 * 119.99829 * 198.15353 * 11 9 8 14 14 H 1.48494 * 109.47453 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.47149 * 120.00037 * 13 11 9 16 16 H 1.48500 * 109.47094 * 239.99736 * 13 11 9 17 17 C 1.40641 * 120.53002 * 0.03302 * 8 7 6 18 18 C 1.38553 * 119.82468 * 359.96390 * 17 8 7 19 19 C 1.46792 * 120.20543 * 180.02562 * 18 17 8 20 20 O 1.21310 * 120.00083 * 359.97438 * 19 18 17 21 21 C 1.39935 * 109.85193 * 359.83264 * 6 5 4 22 22 H 1.07999 * 123.98884 * 0.03691 * 4 3 2 23 23 H 1.07999 * 119.44553 * 359.95812 * 7 6 5 24 24 H 0.96995 * 120.00029 * 179.97438 * 12 11 9 25 25 H 1.07996 * 120.08620 * 179.97438 * 17 8 7 26 26 H 1.07993 * 120.00053 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3089 -1.0921 0.3100 5 16 4.9773 -0.7782 0.2186 6 6 4.7312 0.8993 -0.2488 7 6 5.6563 1.8982 -0.5267 8 6 5.2426 3.1889 -0.8869 9 6 6.2075 4.1817 -1.1637 10 1 7.1944 3.8975 -1.4973 11 6 5.8850 5.5335 -1.0057 12 7 4.8505 5.8794 -0.2823 13 14 6.9308 6.8453 -1.8271 14 1 8.0336 6.1982 -2.5824 15 1 6.0892 7.6370 -2.7601 16 1 7.5014 7.7438 -0.7916 17 6 3.8743 3.5021 -0.9745 18 6 2.9259 2.5290 -0.7038 19 6 1.4955 2.8467 -0.7933 20 8 1.1407 3.9642 -1.1045 21 6 3.3614 1.1749 -0.3265 22 1 2.8887 -2.0494 0.5808 23 1 6.7115 1.6770 -0.4640 24 1 4.6271 6.8169 -0.1725 25 1 3.5637 4.4985 -1.2521 26 1 0.7591 2.0855 -0.5820 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396284863.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:06 Heat of formation + Delta-G solvation = 28.047089 kcal Electronic energy + Delta-G solvation = -15464.528655 eV Core-core repulsion = 12792.518358 eV Total energy + Delta-G solvation = -2672.010298 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.98752 -37.55238 -36.54014 -34.95966 -33.07152 -30.36040 -29.25541 -25.76198 -24.23988 -23.73176 -21.08746 -20.20958 -18.05118 -17.10630 -16.40559 -15.64270 -15.38501 -14.77471 -14.33924 -13.89495 -13.61227 -13.45778 -13.33866 -12.92030 -12.57404 -12.41600 -12.23687 -11.73339 -11.42628 -11.26668 -11.02792 -10.84244 -10.41109 -10.29651 -10.06494 -9.47092 -8.98159 -8.72218 -7.78343 -7.33855 -7.06618 -4.75343 0.96720 1.83905 2.12107 2.34107 2.50176 2.79533 2.87623 2.93181 3.00489 3.28989 3.61230 3.74052 4.22868 4.48603 4.95905 5.12001 5.20118 5.81761 5.84745 6.20219 6.39673 6.44971 6.52572 6.72206 6.78091 7.14339 7.19814 7.42256 7.61218 7.77408 8.01054 8.07836 8.30144 8.34757 9.66654 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023887 B = 0.007304 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.903093 B = 3832.554687 C = 4920.137395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.286 3.714 3 C -0.011 4.011 4 C -0.236 4.236 5 S 0.132 5.868 6 C -0.083 4.083 7 C -0.206 4.206 8 C 0.108 3.892 9 C -0.422 4.422 10 H 0.094 0.906 11 C 0.066 3.934 12 N -0.766 5.766 13 Si 0.920 3.080 14 H -0.255 1.255 15 H -0.267 1.267 16 H -0.269 1.269 17 C -0.033 4.033 18 C -0.158 4.158 19 C 0.377 3.623 20 O -0.471 6.471 21 C -0.145 4.145 22 H 0.161 0.839 23 H 0.107 0.893 24 H 0.294 0.706 25 H 0.143 0.857 26 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.406 -5.791 0.034 6.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.029 4.029 3 C -0.031 4.031 4 C -0.376 4.376 5 S 0.399 5.601 6 C -0.198 4.198 7 C -0.233 4.233 8 C 0.101 3.899 9 C -0.450 4.450 10 H 0.112 0.888 11 C -0.156 4.156 12 N -0.388 5.388 13 Si 0.743 3.257 14 H -0.178 1.178 15 H -0.191 1.191 16 H -0.194 1.194 17 C -0.052 4.052 18 C -0.162 4.162 19 C 0.238 3.762 20 O -0.346 6.346 21 C -0.151 4.151 22 H 0.178 0.822 23 H 0.125 0.875 24 H 0.105 0.895 25 H 0.160 0.840 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.563 -5.948 0.242 6.481 hybrid contribution -0.505 1.238 -0.340 1.380 sum 2.058 -4.709 -0.097 5.140 Atomic orbital electron populations 1.81208 1.11869 1.08672 1.10283 1.25410 0.92317 0.92374 0.92844 1.15850 0.84209 0.94423 1.08572 1.24588 0.99287 1.01846 1.11860 1.82514 1.01307 1.05262 1.71030 1.22078 0.95981 0.96421 1.05351 1.20128 0.96516 0.93110 1.13522 1.17401 0.92053 0.91687 0.88721 1.19873 0.99709 0.89959 1.35433 0.88803 1.26172 0.95551 1.00753 0.93122 1.69775 1.22776 1.21013 1.25262 0.86035 0.80342 0.79462 0.79871 1.17829 1.19125 1.19424 1.22018 0.92265 0.98020 0.92881 1.21146 0.94691 0.92484 1.07908 1.23929 0.91005 0.89476 0.71826 1.90465 1.83870 1.25032 1.35277 1.18978 0.90441 0.91745 1.13981 0.82185 0.87514 0.89488 0.83953 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.20 17.82 41.84 0.75 -7.46 15 2 C 0.29 5.07 13.06 -22.47 -0.29 4.78 15 3 C -0.01 -0.20 5.84 -106.05 -0.62 -0.82 15 4 C -0.24 -3.54 10.65 29.79 0.32 -3.23 15 5 S 0.13 2.00 22.98 -107.50 -2.47 -0.47 15 6 C -0.08 -1.64 6.43 -38.68 -0.25 -1.89 15 7 C -0.21 -4.35 9.72 -38.56 -0.37 -4.72 15 8 C 0.11 2.49 5.55 -107.12 -0.59 1.89 15 9 C -0.42 -9.51 9.00 -37.85 -0.34 -9.85 15 10 H 0.09 1.97 7.91 -52.49 -0.42 1.56 15 11 C 0.07 1.44 5.11 -17.34 -0.09 1.36 15 12 N -0.77 -17.70 10.98 55.54 0.61 -17.09 15 13 Si 0.92 16.26 29.60 -169.99 -5.03 11.23 15 14 H -0.26 -4.41 7.11 56.52 0.40 -4.01 15 15 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 16 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 17 C -0.03 -0.78 8.18 -38.56 -0.32 -1.10 15 18 C -0.16 -3.52 6.05 -102.70 -0.62 -4.14 15 19 C 0.38 8.12 11.09 34.19 0.38 8.50 15 20 O -0.47 -11.25 17.14 5.53 0.09 -11.15 15 21 C -0.14 -2.95 6.20 -102.78 -0.64 -3.59 15 22 H 0.16 1.91 8.06 -52.49 -0.42 1.49 15 23 H 0.11 2.07 8.06 -52.49 -0.42 1.65 15 24 H 0.29 6.17 8.30 -40.82 -0.34 5.83 15 25 H 0.14 3.59 5.73 -52.49 -0.30 3.29 15 26 H 0.08 1.57 4.85 -52.49 -0.25 1.31 15 LS Contribution 259.61 15.07 3.91 3.91 Total: -1.00 -24.85 259.61 -6.53 -31.38 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -0.95 Total: 2.46 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -3.44 Total: -12.81 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 1.36 Total: -24.55 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 16.26 SS G_CDS: -5.03 Total: 11.23 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.47 Total: -0.47 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -24.85 -6.53 -31.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396284863.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.426 kcal (2) G-P(sol) polarization free energy of solvation -24.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds