Wall clock time and date at job start Mon Mar 30 2020 06:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.35615 * 123.08855 * 344.16658 * 3 2 1 5 5 S 1.70013 * 112.02616 * 179.90950 * 4 3 2 6 6 C 1.75872 * 93.04187 * 0.30267 * 5 4 3 7 7 C 1.38960 * 130.21638 * 179.85217 * 6 5 4 8 8 C 1.40238 * 121.10328 * 179.97438 * 7 6 5 9 9 C 1.41187 * 119.73098 * 180.02562 * 8 7 6 10 10 H 1.07992 * 120.00631 * 25.18849 * 9 8 7 11 11 C 1.39868 * 119.99697 * 205.18886 * 9 8 7 12 12 N 1.30888 * 120.00198 * 18.14939 * 11 9 8 13 13 Si 1.86797 * 119.99829 * 198.15353 * 11 9 8 14 14 H 1.48494 * 109.47453 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.47149 * 120.00037 * 13 11 9 16 16 H 1.48500 * 109.47094 * 239.99736 * 13 11 9 17 17 C 1.40641 * 120.53002 * 0.03302 * 8 7 6 18 18 C 1.38553 * 119.82468 * 359.96390 * 17 8 7 19 19 C 1.46792 * 120.20543 * 180.02562 * 18 17 8 20 20 O 1.21310 * 120.00083 * 359.97438 * 19 18 17 21 21 C 1.39935 * 109.85193 * 359.83264 * 6 5 4 22 22 H 1.07999 * 123.98884 * 0.03691 * 4 3 2 23 23 H 1.07999 * 119.44553 * 359.95812 * 7 6 5 24 24 H 0.96995 * 120.00029 * 179.97438 * 12 11 9 25 25 H 1.07996 * 120.08620 * 179.97438 * 17 8 7 26 26 H 1.07993 * 120.00053 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3089 -1.0921 0.3100 5 16 4.9773 -0.7782 0.2186 6 6 4.7312 0.8993 -0.2488 7 6 5.6563 1.8982 -0.5267 8 6 5.2426 3.1889 -0.8869 9 6 6.2075 4.1817 -1.1637 10 1 7.1944 3.8975 -1.4973 11 6 5.8850 5.5335 -1.0057 12 7 4.8505 5.8794 -0.2823 13 14 6.9308 6.8453 -1.8271 14 1 8.0336 6.1982 -2.5824 15 1 6.0892 7.6370 -2.7601 16 1 7.5014 7.7438 -0.7916 17 6 3.8743 3.5021 -0.9745 18 6 2.9259 2.5290 -0.7038 19 6 1.4955 2.8467 -0.7933 20 8 1.1407 3.9642 -1.1045 21 6 3.3614 1.1749 -0.3265 22 1 2.8887 -2.0494 0.5808 23 1 6.7115 1.6770 -0.4640 24 1 4.6271 6.8169 -0.1725 25 1 3.5637 4.4985 -1.2521 26 1 0.7591 2.0855 -0.5820 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396284863.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:06 Heat of formation + Delta-G solvation = 15.837363 kcal Electronic energy + Delta-G solvation = -15465.058109 eV Core-core repulsion = 12792.518358 eV Total energy + Delta-G solvation = -2672.539751 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.66514 -39.23711 -38.02448 -36.46938 -34.62317 -32.04798 -30.81833 -27.36930 -25.82283 -25.28365 -22.69043 -21.84953 -19.69228 -18.59897 -17.87082 -17.20900 -17.05896 -16.38146 -15.90252 -15.51321 -15.18619 -15.01362 -14.98192 -14.37157 -14.05874 -13.89867 -13.76988 -13.21291 -12.95101 -12.73472 -12.54419 -12.31153 -11.95908 -11.81484 -11.58840 -11.05566 -10.71480 -10.27862 -9.36813 -8.88464 -8.52851 -6.41859 -0.53770 0.25163 0.71670 0.75067 1.08252 1.33171 1.41042 1.56575 1.60040 1.64498 2.14852 2.28390 2.65322 3.06876 3.28911 3.44517 3.81185 4.15754 4.40311 4.71984 4.76372 4.86236 4.96520 5.08673 5.16363 5.51406 5.53043 5.79742 5.93098 6.34535 6.35540 6.40247 6.68671 6.70774 8.13047 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023887 B = 0.007304 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.903093 B = 3832.554687 C = 4920.137395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.298 3.702 3 C -0.048 4.048 4 C -0.188 4.188 5 S 0.229 5.771 6 C -0.123 4.123 7 C -0.199 4.199 8 C 0.079 3.921 9 C -0.462 4.462 10 H 0.100 0.900 11 C 0.031 3.969 12 N -0.814 5.814 13 Si 0.987 3.013 14 H -0.247 1.247 15 H -0.271 1.271 16 H -0.265 1.265 17 C -0.056 4.056 18 C -0.178 4.178 19 C 0.385 3.615 20 O -0.502 6.502 21 C -0.135 4.135 22 H 0.207 0.793 23 H 0.121 0.879 24 H 0.295 0.705 25 H 0.117 0.883 26 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.271 -9.193 0.612 10.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.017 4.017 3 C -0.067 4.067 4 C -0.328 4.328 5 S 0.497 5.503 6 C -0.237 4.237 7 C -0.224 4.224 8 C 0.073 3.927 9 C -0.490 4.490 10 H 0.118 0.882 11 C -0.186 4.186 12 N -0.438 5.438 13 Si 0.807 3.193 14 H -0.169 1.169 15 H -0.196 1.196 16 H -0.189 1.189 17 C -0.075 4.075 18 C -0.181 4.181 19 C 0.248 3.752 20 O -0.379 6.379 21 C -0.143 4.143 22 H 0.224 0.776 23 H 0.139 0.861 24 H 0.106 0.894 25 H 0.134 0.866 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.452 -9.365 0.820 10.015 hybrid contribution -0.824 1.807 -0.409 2.027 sum 2.628 -7.559 0.411 8.013 Atomic orbital electron populations 1.81237 1.12330 1.09048 1.11367 1.25332 0.92168 0.91979 0.92208 1.15693 0.84206 0.94394 1.12393 1.25365 0.99639 1.02460 1.05349 1.82378 0.99954 0.99932 1.68074 1.22464 0.95513 0.99725 1.06043 1.20347 0.97591 0.92796 1.11710 1.17667 0.91947 0.93130 0.89921 1.20046 1.00137 0.90723 1.38125 0.88237 1.26946 0.96350 1.02433 0.92899 1.69846 1.25089 1.21285 1.27611 0.85061 0.78738 0.76775 0.78756 1.16933 1.19568 1.18931 1.21869 0.93305 0.97528 0.94834 1.21326 0.94624 0.93616 1.08573 1.24178 0.91267 0.89194 0.70596 1.90452 1.84187 1.26375 1.36878 1.19242 0.91560 0.91555 1.11913 0.77613 0.86088 0.89438 0.86571 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.14 17.82 19.01 0.34 -15.80 15 2 C 0.30 9.76 13.06 88.33 1.15 10.91 15 3 C -0.05 -1.51 5.84 -20.79 -0.12 -1.63 15 4 C -0.19 -4.47 10.65 67.21 0.72 -3.76 15 5 S 0.23 5.68 22.98 -56.49 -1.30 4.38 15 6 C -0.12 -4.54 6.43 22.85 0.15 -4.39 15 7 C -0.20 -8.29 9.72 22.93 0.22 -8.07 15 8 C 0.08 3.80 5.55 -21.48 -0.12 3.68 15 9 C -0.46 -21.83 9.00 23.39 0.21 -21.62 15 10 H 0.10 4.34 7.91 -2.91 -0.02 4.32 15 11 C 0.03 1.42 5.11 85.23 0.44 1.86 15 12 N -0.81 -40.33 10.98 21.81 0.24 -40.09 15 13 Si 0.99 34.74 29.60 68.60 2.03 36.77 15 14 H -0.25 -8.19 7.11 99.48 0.71 -7.48 15 15 H -0.27 -9.56 7.11 99.48 0.71 -8.85 15 16 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 17 C -0.06 -2.81 8.18 22.93 0.19 -2.62 15 18 C -0.18 -8.10 6.05 -18.62 -0.11 -8.21 15 19 C 0.38 17.03 11.09 70.06 0.78 17.80 15 20 O -0.50 -25.07 17.14 -3.12 -0.05 -25.12 15 21 C -0.14 -5.32 6.20 -18.67 -0.12 -5.43 15 22 H 0.21 3.18 8.06 -2.91 -0.02 3.16 15 23 H 0.12 4.55 8.06 -2.91 -0.02 4.53 15 24 H 0.29 13.36 8.30 -92.71 -0.77 12.59 15 25 H 0.12 6.37 5.73 -2.91 -0.02 6.36 15 26 H 0.10 3.94 4.85 -2.91 -0.01 3.93 15 Total: -1.00 -56.97 259.61 5.89 -51.08 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.25 Total: 10.28 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 3.38 Total: -21.49 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.58 Total: -55.90 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.05 Total: -25.12 kcal Atomic # 14 Polarization: 34.74 SS G_CDS: 2.03 Total: 36.77 kcal Atomic # 16 Polarization: 5.68 SS G_CDS: -1.30 Total: 4.38 kcal Total: -56.97 5.89 -51.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396284863.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.922 kcal (2) G-P(sol) polarization free energy of solvation -56.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds