Wall clock time and date at job start Mon Mar 30 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.37778 * 119.57964 * 29.09136 * 3 2 1 5 5 C 1.40815 * 120.33984 * 180.25581 * 4 3 2 6 6 C 1.40280 * 120.23044 * 179.69154 * 5 4 3 7 7 H 1.07995 * 120.00028 * 153.17084 * 6 5 4 8 8 C 1.40444 * 119.99569 * 332.90576 * 6 5 4 9 9 N 1.30548 * 120.00102 * 344.30486 * 8 6 5 10 10 Si 1.86800 * 120.00237 * 164.31050 * 8 6 5 11 11 H 1.48496 * 109.47045 * 89.99068 * 10 8 6 12 12 H 1.48498 * 109.47229 * 209.99682 * 10 8 6 13 13 H 1.48504 * 109.46718 * 329.99907 * 10 8 6 14 14 C 1.46342 * 119.54674 * 359.42132 * 5 4 3 15 15 C 1.46235 * 120.00515 * 180.25000 * 14 5 4 16 16 O 1.21396 * 120.00355 * 180.02562 * 15 14 5 17 17 C 1.40748 * 119.99165 * 0.27364 * 14 5 4 18 18 S 1.76081 * 130.36825 * 179.97438 * 17 14 5 19 19 C 1.75482 * 91.50095 * 179.97438 * 18 17 14 20 20 C 1.32668 * 110.74881 * 0.02562 * 19 18 17 21 21 C 1.40162 * 115.94962 * 359.97438 * 20 19 18 22 22 H 1.08000 * 119.82739 * 359.97438 * 4 3 2 23 23 H 0.96996 * 120.00245 * 180.02562 * 9 8 6 24 24 H 1.08010 * 119.99743 * 359.97438 * 15 14 5 25 25 H 1.08005 * 124.62308 * 179.97438 * 19 18 17 26 26 H 1.07992 * 122.02796 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2487 -1.0461 -0.5826 5 6 4.6567 -1.0645 -0.5869 6 6 5.3473 -2.1345 -1.1750 7 1 6.3411 -1.9840 -1.5700 8 6 4.7484 -3.4030 -1.2451 9 7 3.7037 -3.6731 -0.5103 10 14 5.4467 -4.7037 -2.3897 11 1 6.4703 -5.5007 -1.6672 12 1 4.3538 -5.5991 -2.8467 13 1 6.0712 -4.0449 -3.5650 14 6 5.3947 0.0434 0.0210 15 6 6.8570 0.0373 0.0173 16 8 7.4692 0.9560 0.5220 17 6 4.6969 1.1145 0.6098 18 16 5.2965 2.5655 1.4070 19 6 3.6628 3.1272 1.7151 20 6 2.7723 2.2650 1.2420 21 6 3.2949 1.1251 0.6158 22 1 2.6994 -1.8589 -1.0342 23 1 3.2903 -4.5492 -0.5584 24 1 7.3925 -0.7852 -0.4339 25 1 3.4159 4.0486 2.2217 26 1 1.7093 2.4314 1.3337 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396285433.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:44 Heat of formation + Delta-G solvation = 23.635084 kcal Electronic energy + Delta-G solvation = -15541.503841 eV Core-core repulsion = 12869.302225 eV Total energy + Delta-G solvation = -2672.201616 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.65935 -37.32173 -35.77806 -35.52857 -33.17711 -30.60811 -29.18935 -25.81902 -24.56273 -22.64481 -20.47238 -19.79593 -19.05036 -16.94436 -16.02300 -15.72944 -15.14040 -14.76136 -14.01081 -13.78882 -13.54864 -13.07011 -12.96156 -12.88772 -12.58257 -12.18887 -12.01892 -11.89521 -11.60212 -11.33964 -11.14190 -10.71828 -10.61771 -10.25016 -9.87246 -9.65304 -8.60086 -8.52330 -7.75933 -7.64083 -6.99844 -5.09490 1.12706 1.93176 2.50532 2.52863 2.68493 2.74667 2.97685 3.01626 3.28331 3.29159 3.37060 3.87778 4.13246 4.65779 4.99592 5.48537 5.54276 6.01513 6.05625 6.13661 6.30286 6.41318 6.55719 6.72732 6.86207 7.09945 7.23964 7.25615 7.34754 7.64058 7.86608 8.03379 8.08474 8.65457 9.24474 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.019662 B = 0.008689 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.726557 B = 3221.727790 C = 4564.198320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.276 3.724 3 C 0.023 3.977 4 C -0.068 4.068 5 C 0.151 3.849 6 C -0.384 4.384 7 H 0.106 0.894 8 C 0.065 3.935 9 N -0.741 5.741 10 Si 0.926 3.074 11 H -0.259 1.259 12 H -0.268 1.268 13 H -0.250 1.250 14 C -0.306 4.306 15 C 0.378 3.622 16 O -0.517 6.517 17 C -0.013 4.013 18 S 0.101 5.899 19 C -0.286 4.286 20 C -0.083 4.083 21 C -0.183 4.183 22 H 0.138 0.862 23 H 0.302 0.698 24 H 0.084 0.916 25 H 0.148 0.852 26 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 -0.760 -1.856 2.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.037 4.037 3 C 0.016 3.984 4 C -0.091 4.091 5 C 0.144 3.856 6 C -0.409 4.409 7 H 0.124 0.876 8 C -0.162 4.162 9 N -0.361 5.361 10 Si 0.748 3.252 11 H -0.183 1.183 12 H -0.192 1.192 13 H -0.173 1.173 14 C -0.316 4.316 15 C 0.246 3.754 16 O -0.400 6.400 17 C -0.130 4.130 18 S 0.365 5.635 19 C -0.420 4.420 20 C -0.113 4.113 21 C -0.192 4.192 22 H 0.156 0.844 23 H 0.114 0.886 24 H 0.100 0.900 25 H 0.165 0.835 26 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.799 0.192 -1.145 2.141 hybrid contribution -1.099 -1.298 -0.654 1.822 sum 0.700 -1.105 -1.799 2.225 Atomic orbital electron populations 1.81096 1.12368 1.09613 1.10237 1.26070 0.93026 0.92136 0.92498 1.16729 0.82580 0.96136 1.02907 1.21462 0.94679 0.95133 0.97807 1.18303 0.90534 0.90364 0.86410 1.20102 1.02637 0.92147 1.26039 0.87601 1.26440 0.94014 1.00908 0.94848 1.69610 1.15135 1.24173 1.27207 0.85940 0.80000 0.78877 0.80392 1.18315 1.19203 1.17294 1.20410 0.94393 1.00040 1.16783 1.23249 0.88824 0.87338 0.75941 1.90403 1.70945 1.38170 1.40477 1.22400 0.94838 0.96912 0.98838 1.84342 1.04912 1.15255 1.59019 1.24979 0.97567 1.05529 1.13891 1.19554 0.99237 0.93579 0.98953 1.18219 0.91141 0.97227 1.12566 0.84445 0.88605 0.89974 0.83478 0.86598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.51 18.54 41.84 0.78 -8.74 15 2 C 0.28 5.65 14.91 -22.47 -0.34 5.31 15 3 C 0.02 0.47 5.91 -104.42 -0.62 -0.14 15 4 C -0.07 -1.43 8.26 -38.78 -0.32 -1.75 15 5 C 0.15 3.20 5.70 -104.90 -0.60 2.61 15 6 C -0.38 -7.49 8.42 -37.98 -0.32 -7.81 15 7 H 0.11 1.87 6.61 -52.49 -0.35 1.52 15 8 C 0.06 1.19 5.16 -17.27 -0.09 1.10 15 9 N -0.74 -14.42 10.98 55.57 0.61 -13.81 15 10 Si 0.93 13.70 29.59 -169.99 -5.03 8.67 15 11 H -0.26 -3.85 7.11 56.52 0.40 -3.44 15 12 H -0.27 -3.96 7.11 56.52 0.40 -3.56 15 13 H -0.25 -3.67 7.11 56.52 0.40 -3.27 15 14 C -0.31 -6.71 6.07 -102.48 -0.62 -7.33 15 15 C 0.38 7.82 10.98 33.94 0.37 8.19 15 16 O -0.52 -11.73 15.75 5.46 0.09 -11.64 15 17 C -0.01 -0.29 6.33 -37.90 -0.24 -0.53 15 18 S 0.10 2.05 21.37 -107.50 -2.30 -0.25 15 19 C -0.29 -5.26 11.10 28.84 0.32 -4.94 15 20 C -0.08 -1.63 9.73 -40.75 -0.40 -2.03 15 21 C -0.18 -3.93 6.01 -104.72 -0.63 -4.56 15 22 H 0.14 2.84 6.24 -52.49 -0.33 2.52 15 23 H 0.30 5.23 8.29 -40.82 -0.34 4.89 15 24 H 0.08 1.47 6.58 -52.48 -0.35 1.12 15 25 H 0.15 2.26 8.06 -52.48 -0.42 1.84 15 26 H 0.12 2.10 7.97 -52.49 -0.42 1.68 15 LS Contribution 259.89 15.07 3.92 3.92 Total: -1.00 -24.02 259.89 -6.41 -30.42 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -0.99 Total: 3.30 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -3.47 Total: -11.87 kcal Atomic # 7 Polarization: -23.94 SS G_CDS: 1.39 Total: -22.55 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 13.70 SS G_CDS: -5.03 Total: 8.67 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.30 Total: -0.25 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -24.02 -6.41 -30.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396285433.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.059 kcal (2) G-P(sol) polarization free energy of solvation -24.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds