Wall clock time and date at job start Mon Mar 30 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.37778 * 119.57964 * 29.09136 * 3 2 1 5 5 C 1.40815 * 120.33984 * 180.25581 * 4 3 2 6 6 C 1.40280 * 120.23044 * 179.69154 * 5 4 3 7 7 H 1.07995 * 120.00028 * 153.17084 * 6 5 4 8 8 C 1.40444 * 119.99569 * 332.90576 * 6 5 4 9 9 N 1.30548 * 120.00102 * 344.30486 * 8 6 5 10 10 Si 1.86800 * 120.00237 * 164.31050 * 8 6 5 11 11 H 1.48496 * 109.47045 * 89.99068 * 10 8 6 12 12 H 1.48498 * 109.47229 * 209.99682 * 10 8 6 13 13 H 1.48504 * 109.46718 * 329.99907 * 10 8 6 14 14 C 1.46342 * 119.54674 * 359.42132 * 5 4 3 15 15 C 1.46235 * 120.00515 * 180.25000 * 14 5 4 16 16 O 1.21396 * 120.00355 * 180.02562 * 15 14 5 17 17 C 1.40748 * 119.99165 * 0.27364 * 14 5 4 18 18 S 1.76081 * 130.36825 * 179.97438 * 17 14 5 19 19 C 1.75482 * 91.50095 * 179.97438 * 18 17 14 20 20 C 1.32668 * 110.74881 * 0.02562 * 19 18 17 21 21 C 1.40162 * 115.94962 * 359.97438 * 20 19 18 22 22 H 1.08000 * 119.82739 * 359.97438 * 4 3 2 23 23 H 0.96996 * 120.00245 * 180.02562 * 9 8 6 24 24 H 1.08010 * 119.99743 * 359.97438 * 15 14 5 25 25 H 1.08005 * 124.62308 * 179.97438 * 19 18 17 26 26 H 1.07992 * 122.02796 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2487 -1.0461 -0.5826 5 6 4.6567 -1.0645 -0.5869 6 6 5.3473 -2.1345 -1.1750 7 1 6.3411 -1.9840 -1.5700 8 6 4.7484 -3.4030 -1.2451 9 7 3.7037 -3.6731 -0.5103 10 14 5.4467 -4.7037 -2.3897 11 1 6.4703 -5.5007 -1.6672 12 1 4.3538 -5.5991 -2.8467 13 1 6.0712 -4.0449 -3.5650 14 6 5.3947 0.0434 0.0210 15 6 6.8570 0.0373 0.0173 16 8 7.4692 0.9560 0.5220 17 6 4.6969 1.1145 0.6098 18 16 5.2965 2.5655 1.4070 19 6 3.6628 3.1272 1.7151 20 6 2.7723 2.2650 1.2420 21 6 3.2949 1.1251 0.6158 22 1 2.6994 -1.8589 -1.0342 23 1 3.2903 -4.5492 -0.5584 24 1 7.3925 -0.7852 -0.4339 25 1 3.4159 4.0486 2.2217 26 1 1.7093 2.4314 1.3337 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396285433.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:44 Heat of formation + Delta-G solvation = 13.261955 kcal Electronic energy + Delta-G solvation = -15541.953654 eV Core-core repulsion = 12869.302225 eV Total energy + Delta-G solvation = -2672.651429 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.23995 -38.94448 -37.41095 -37.05430 -34.70396 -32.21466 -30.74373 -27.36283 -26.16900 -24.18977 -22.06855 -21.33631 -20.60643 -18.49705 -17.49188 -17.31925 -16.63551 -16.32198 -15.59125 -15.21836 -15.16044 -14.63659 -14.61786 -14.44092 -14.02828 -13.77663 -13.61705 -13.33230 -13.05698 -12.73286 -12.58809 -12.25190 -11.97484 -11.70164 -11.43629 -11.11500 -10.21242 -10.12716 -9.32062 -9.11732 -8.58579 -6.65272 -0.45993 0.34451 0.94214 1.15494 1.43654 1.45783 1.61139 1.64787 1.66069 1.74152 2.13223 2.31706 2.59458 3.02205 3.39576 3.96109 4.03600 4.47573 4.55027 4.63855 4.79624 4.89458 4.99575 5.19251 5.30044 5.51777 5.67252 5.68799 5.79857 6.10457 6.32447 6.44080 6.46690 7.07337 7.82617 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.019662 B = 0.008689 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.726557 B = 3221.727790 C = 4564.198320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.286 3.714 3 C 0.014 3.986 4 C -0.068 4.068 5 C 0.128 3.872 6 C -0.380 4.380 7 H 0.125 0.875 8 C 0.035 3.965 9 N -0.763 5.763 10 Si 0.995 3.005 11 H -0.256 1.256 12 H -0.266 1.266 13 H -0.245 1.245 14 C -0.334 4.334 15 C 0.377 3.623 16 O -0.544 6.544 17 C -0.038 4.038 18 S 0.092 5.908 19 C -0.270 4.270 20 C -0.098 4.098 21 C -0.201 4.201 22 H 0.138 0.862 23 H 0.313 0.687 24 H 0.115 0.885 25 H 0.181 0.819 26 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 -1.692 -2.506 3.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.028 4.028 3 C 0.008 3.992 4 C -0.091 4.091 5 C 0.121 3.879 6 C -0.404 4.404 7 H 0.142 0.858 8 C -0.190 4.190 9 N -0.384 5.384 10 Si 0.813 3.187 11 H -0.180 1.180 12 H -0.190 1.190 13 H -0.168 1.168 14 C -0.344 4.344 15 C 0.247 3.753 16 O -0.429 6.429 17 C -0.155 4.155 18 S 0.355 5.645 19 C -0.403 4.403 20 C -0.127 4.127 21 C -0.210 4.210 22 H 0.155 0.845 23 H 0.125 0.875 24 H 0.131 0.869 25 H 0.198 0.802 26 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.078 -0.733 -1.787 2.837 hybrid contribution -1.230 -1.105 -0.463 1.717 sum 0.848 -1.838 -2.250 3.026 Atomic orbital electron populations 1.81092 1.12418 1.09974 1.10648 1.25965 0.92815 0.91823 0.92182 1.16772 0.82691 0.96384 1.03379 1.21524 0.94892 0.94981 0.97686 1.18531 0.90737 0.91167 0.87481 1.20556 1.03361 0.92181 1.24344 0.85759 1.27264 0.93881 1.02230 0.95606 1.69624 1.15669 1.25333 1.27747 0.84931 0.79209 0.76162 0.78370 1.17978 1.19038 1.16755 1.20638 0.95147 1.00646 1.17932 1.23586 0.88541 0.87659 0.75475 1.90384 1.71198 1.39370 1.41950 1.22709 0.95451 0.97777 0.99532 1.84287 1.06400 1.14882 1.58939 1.25312 0.96091 1.06161 1.12769 1.19700 1.00142 0.93408 0.99453 1.18481 0.91210 0.98027 1.13260 0.84492 0.87490 0.86916 0.80165 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -19.11 18.54 19.00 0.35 -18.76 15 2 C 0.29 11.63 14.91 88.33 1.32 12.94 15 3 C 0.01 0.59 5.91 -19.73 -0.12 0.47 15 4 C -0.07 -2.87 8.26 22.79 0.19 -2.68 15 5 C 0.13 5.41 5.70 -20.04 -0.11 5.29 15 6 C -0.38 -14.28 8.42 23.30 0.20 -14.08 15 7 H 0.12 4.10 6.61 -2.91 -0.02 4.08 15 8 C 0.04 1.23 5.16 85.42 0.44 1.67 15 9 N -0.76 -28.75 10.98 21.91 0.24 -28.51 15 10 Si 1.00 25.79 29.59 68.60 2.03 27.82 15 11 H -0.26 -6.53 7.11 99.48 0.71 -5.82 15 12 H -0.27 -6.83 7.11 99.48 0.71 -6.12 15 13 H -0.24 -6.14 7.11 99.48 0.71 -5.44 15 14 C -0.33 -14.70 6.07 -18.48 -0.11 -14.81 15 15 C 0.38 15.48 10.98 69.90 0.77 16.25 15 16 O -0.54 -24.74 15.75 -3.39 -0.05 -24.80 15 17 C -0.04 -1.70 6.33 23.36 0.15 -1.55 15 18 S 0.09 3.69 21.37 -56.49 -1.21 2.48 15 19 C -0.27 -9.56 11.10 66.65 0.74 -8.82 15 20 C -0.10 -3.75 9.73 21.57 0.21 -3.54 15 21 C -0.20 -8.67 6.01 -19.93 -0.12 -8.79 15 22 H 0.14 5.67 6.24 -2.91 -0.02 5.65 15 23 H 0.31 10.36 8.29 -92.71 -0.77 9.59 15 24 H 0.11 3.85 6.58 -2.91 -0.02 3.83 15 25 H 0.18 5.05 8.06 -2.91 -0.02 5.02 15 26 H 0.13 4.53 7.97 -2.91 -0.02 4.51 15 Total: -1.00 -50.25 259.89 6.16 -44.10 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 1.25 Total: 15.30 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 3.55 Total: -17.63 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.59 Total: -47.27 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.80 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: 2.03 Total: 27.82 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.21 Total: 2.48 kcal Total: -50.25 6.16 -44.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396285433.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.358 kcal (2) G-P(sol) polarization free energy of solvation -50.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds