Wall clock time and date at job start Mon Mar 30 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39729 * 119.46337 * 99.73640 * 3 2 1 5 5 C 1.36017 * 121.13026 * 179.72284 * 4 3 2 6 6 C 1.40753 * 120.27734 * 0.25327 * 5 4 3 7 7 C 1.40365 * 120.29844 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99951 * 142.50175 * 7 6 5 9 9 C 1.40274 * 119.99561 * 322.49455 * 7 6 5 10 10 N 1.30656 * 119.99575 * 170.29525 * 9 7 6 11 11 Si 1.86798 * 120.00321 * 350.30203 * 9 7 6 12 12 H 1.48511 * 109.47226 * 92.55266 * 11 9 7 13 13 H 1.48500 * 109.47127 * 212.55037 * 11 9 7 14 14 H 1.48497 * 109.47363 * 332.55191 * 11 9 7 15 15 C 1.47417 * 119.40943 * 0.02562 * 6 5 4 16 16 C 1.45788 * 129.97823 * 180.02562 * 15 6 5 17 17 C 1.46164 * 123.19783 * 359.94159 * 16 15 6 18 18 O 1.21392 * 120.00346 * 174.77153 * 17 16 15 19 19 C 1.35947 * 113.60807 * 179.97438 * 16 15 6 20 20 S 1.70041 * 111.84997 * 0.02562 * 19 16 15 21 21 C 1.38966 * 118.59447 * 359.97438 * 15 6 5 22 22 H 1.08008 * 119.44043 * 359.97438 * 4 3 2 23 23 H 1.07999 * 119.86428 * 180.27389 * 5 4 3 24 24 H 0.96998 * 119.99741 * 180.02562 * 10 9 7 25 25 H 1.07997 * 120.00377 * 354.76818 * 17 16 15 26 26 H 1.08000 * 124.08248 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2552 0.2067 -1.1991 5 6 4.6148 0.2195 -1.2371 6 6 5.3596 0.0185 -0.0598 7 6 6.7627 0.0322 -0.0985 8 1 7.3210 0.4714 0.7150 9 6 7.4395 -0.5247 -1.1937 10 7 8.7272 -0.3469 -1.3249 11 14 6.4998 -1.5203 -2.4645 12 1 6.0678 -0.6290 -3.5710 13 1 7.3782 -2.5892 -3.0042 14 1 5.3065 -2.1343 -1.8288 15 6 4.6530 -0.2066 1.2142 16 6 5.1845 -0.4362 2.5522 17 6 6.6152 -0.4812 2.8482 18 8 6.9945 -0.5814 3.9970 19 6 4.2230 -0.6052 3.4984 20 16 2.6597 -0.4990 2.8380 21 6 3.2634 -0.2126 1.2120 22 1 2.6973 0.3624 -2.1107 23 1 5.1250 0.3850 -2.1745 24 1 9.1952 -0.7317 -2.0824 25 1 7.3349 -0.4253 2.0449 26 1 4.4274 -0.7859 4.5434 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396285443.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:36 Heat of formation + Delta-G solvation = 15.001058 kcal Electronic energy + Delta-G solvation = -15621.070273 eV Core-core repulsion = 12948.494257 eV Total energy + Delta-G solvation = -2672.576016 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59408 -39.47265 -37.40882 -36.14784 -35.35393 -32.70390 -30.37905 -27.87651 -26.80338 -23.62821 -23.13921 -21.23846 -20.18147 -19.38865 -17.61352 -17.01254 -16.86206 -16.74089 -15.60886 -15.46511 -15.19256 -15.09286 -14.81773 -14.80307 -13.90343 -13.68497 -13.59048 -13.36971 -13.29399 -13.01657 -12.59639 -12.33988 -11.84517 -11.72997 -11.59800 -11.11200 -10.67856 -10.12322 -9.46650 -9.08169 -8.74842 -6.66316 -0.39102 0.13242 0.56066 0.62422 1.02348 1.35110 1.46636 1.55836 1.83375 1.85393 2.12325 2.21614 2.67347 3.27379 3.31076 3.70123 3.81899 4.20711 4.33129 4.51314 4.57432 4.85058 4.95175 5.00536 5.19173 5.37731 5.55835 5.70998 5.80511 6.07222 6.38045 6.48521 6.51430 6.74310 7.91561 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.016729 B = 0.010840 C = 0.006877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.338078 B = 2582.493628 C = 4070.729706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.290 3.710 3 C -0.167 4.167 4 C 0.017 3.983 5 C -0.260 4.260 6 C 0.133 3.867 7 C -0.418 4.418 8 H 0.099 0.901 9 C 0.057 3.943 10 N -0.794 5.794 11 Si 0.949 3.051 12 H -0.243 1.243 13 H -0.279 1.279 14 H -0.244 1.244 15 C -0.144 4.144 16 C -0.172 4.172 17 C 0.401 3.599 18 O -0.506 6.506 19 C -0.206 4.206 20 S 0.180 5.820 21 C -0.082 4.082 22 H 0.142 0.858 23 H 0.128 0.872 24 H 0.308 0.692 25 H 0.130 0.870 26 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.593 -1.370 -0.687 3.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.020 4.020 3 C -0.179 4.179 4 C -0.005 4.005 5 C -0.281 4.281 6 C 0.127 3.873 7 C -0.443 4.443 8 H 0.116 0.884 9 C -0.166 4.166 10 N -0.416 5.416 11 Si 0.771 3.229 12 H -0.167 1.167 13 H -0.206 1.206 14 H -0.167 1.167 15 C -0.151 4.151 16 C -0.187 4.187 17 C 0.262 3.738 18 O -0.384 6.384 19 C -0.342 4.342 20 S 0.448 5.552 21 C -0.199 4.199 22 H 0.159 0.841 23 H 0.146 0.854 24 H 0.120 0.880 25 H 0.146 0.854 26 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.270 -1.557 0.529 5.521 hybrid contribution 1.945 -0.143 -1.004 2.194 sum -3.325 -1.699 -0.474 3.764 Atomic orbital electron populations 1.81128 1.12718 1.15186 1.08975 1.25892 0.92605 0.91231 0.92321 1.14630 0.82706 1.27410 0.93140 1.20396 0.93952 0.90929 0.95262 1.20593 0.93682 1.15558 0.98306 1.18646 0.92825 0.86422 0.89440 1.19897 0.90829 1.29080 1.04541 0.88384 1.26920 0.95585 0.95418 0.98655 1.69525 1.10562 1.32518 1.28963 0.85653 0.79588 0.78884 0.78748 1.16730 1.20558 1.16671 1.19897 0.90783 1.11074 0.93301 1.20733 0.96818 1.08864 0.92273 1.24316 0.90350 0.67834 0.91325 1.90442 1.83338 1.37987 1.26664 1.25473 0.97502 1.06949 1.04325 1.82587 1.04566 1.71124 0.96884 1.22532 0.96278 1.04147 0.96982 0.84067 0.85431 0.88041 0.85394 0.80062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -19.11 18.54 19.00 0.35 -18.76 15 2 C 0.29 10.50 14.99 88.33 1.32 11.82 15 3 C -0.17 -6.02 5.78 -20.91 -0.12 -6.14 15 4 C 0.02 0.57 9.57 22.11 0.21 0.79 15 5 C -0.26 -9.42 6.90 22.37 0.15 -9.27 15 6 C 0.13 5.29 5.16 -19.73 -0.10 5.19 15 7 C -0.42 -17.33 8.18 23.28 0.19 -17.14 15 8 H 0.10 4.22 5.77 -2.91 -0.02 4.21 15 9 C 0.06 2.31 5.47 85.36 0.47 2.78 15 10 N -0.79 -33.24 13.92 21.88 0.30 -32.94 15 11 Si 0.95 32.30 24.53 68.60 1.68 33.98 15 12 H -0.24 -7.58 6.78 99.48 0.67 -6.91 15 13 H -0.28 -9.27 7.11 99.48 0.71 -8.56 15 14 H -0.24 -8.63 6.73 99.48 0.67 -7.96 15 15 C -0.14 -5.63 6.19 -18.73 -0.12 -5.75 15 16 C -0.17 -6.39 5.97 -19.80 -0.12 -6.51 15 17 C 0.40 15.11 10.90 69.88 0.76 15.87 15 18 O -0.51 -20.58 17.51 -3.38 -0.06 -20.64 15 19 C -0.21 -6.77 10.42 67.29 0.70 -6.07 15 20 S 0.18 5.71 22.64 -56.49 -1.28 4.43 15 21 C -0.08 -3.02 6.31 23.21 0.15 -2.87 15 22 H 0.14 3.84 8.06 -2.91 -0.02 3.81 15 23 H 0.13 4.32 5.09 -2.91 -0.01 4.31 15 24 H 0.31 11.49 8.29 -92.71 -0.77 10.72 15 25 H 0.13 4.83 4.81 -2.91 -0.01 4.82 15 26 H 0.18 5.29 7.98 -2.91 -0.02 5.27 15 Total: -1.00 -47.22 253.61 5.69 -41.53 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 1.19 Total: 9.70 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 3.50 Total: -17.31 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.66 Total: -51.70 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.06 Total: -20.64 kcal Atomic # 14 Polarization: 32.30 SS G_CDS: 1.68 Total: 33.98 kcal Atomic # 16 Polarization: 5.71 SS G_CDS: -1.28 Total: 4.43 kcal Total: -47.22 5.69 -41.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396285443.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.532 kcal (2) G-P(sol) polarization free energy of solvation -47.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds