Wall clock time and date at job start Mon Mar 30 2020 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38952 * 120.14605 * 119.85842 * 3 2 1 5 5 C 1.39074 * 120.49506 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.59860 * 180.27673 * 5 4 3 7 7 O 1.21355 * 119.99792 * 179.72914 * 6 5 4 8 8 C 1.47484 * 120.79846 * 0.02562 * 5 4 3 9 9 C 1.40474 * 128.62287 * 179.97438 * 8 5 4 10 10 C 1.32315 * 115.91122 * 180.02562 * 9 8 5 11 11 S 1.75499 * 110.68783 * 0.02562 * 10 9 8 12 12 C 1.39486 * 118.91514 * 0.02562 * 8 5 4 13 13 C 1.42040 * 120.10253 * 359.97438 * 12 8 5 14 14 C 1.40054 * 120.00787 * 179.97438 * 13 12 8 15 15 H 1.08002 * 119.99725 * 219.10646 * 14 13 12 16 16 C 1.40617 * 119.99982 * 39.10082 * 14 13 12 17 17 N 1.30449 * 119.99816 * 20.90172 * 16 14 13 18 18 Si 1.86802 * 120.00034 * 200.90179 * 16 14 13 19 19 H 1.48491 * 109.47224 * 90.00116 * 18 16 14 20 20 H 1.48501 * 109.46939 * 210.00349 * 18 16 14 21 21 H 1.48499 * 109.46996 * 329.99779 * 18 16 14 22 22 H 1.07995 * 119.75307 * 0.03953 * 4 3 2 23 23 H 1.07997 * 120.00347 * 359.72498 * 6 5 4 24 24 H 1.08003 * 122.04514 * 0.03210 * 9 8 5 25 25 H 1.08003 * 124.65606 * 180.02562 * 10 9 8 26 26 H 0.97002 * 119.99552 * 182.04902 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2656 0.5992 -1.0421 5 6 4.6563 0.6035 -1.0497 6 6 5.3719 1.2456 -2.1552 7 8 6.5853 1.2580 -2.1667 8 6 5.4195 -0.0255 0.0444 9 6 6.8123 -0.1169 0.2023 10 6 7.2310 -0.7429 1.2902 11 16 5.8698 -1.2954 2.2503 12 6 4.7236 -0.6286 1.0922 13 6 3.3032 -0.6307 1.0960 14 6 2.6066 -1.2373 2.1487 15 1 1.7083 -1.8021 1.9472 16 6 3.0767 -1.1110 3.4680 17 7 3.8841 -0.1357 3.7820 18 14 2.5449 -2.3397 4.7707 19 1 3.5029 -3.4738 4.8017 20 1 2.5218 -1.6747 6.0982 21 1 1.1872 -2.8471 4.4476 22 1 2.7238 1.0646 -1.8521 23 1 4.8195 1.7078 -2.9599 24 1 7.4994 0.2985 -0.5200 25 1 8.2681 -0.8931 1.5516 26 1 4.2319 -0.0658 4.6849 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396285940.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:01 Heat of formation + Delta-G solvation = 23.563756 kcal Electronic energy + Delta-G solvation = -15718.770163 eV Core-core repulsion = 13046.565454 eV Total energy + Delta-G solvation = -2672.204709 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.74695 -37.22959 -35.72430 -34.83537 -33.56185 -30.66476 -28.53220 -26.67056 -23.44862 -22.77607 -21.12515 -19.72780 -18.21923 -17.34190 -15.83148 -15.64610 -15.48864 -14.40167 -14.05571 -13.68900 -13.49903 -13.05573 -13.02903 -12.78538 -12.31764 -12.15980 -11.82208 -11.76951 -11.45622 -11.38585 -11.02865 -10.79252 -10.42275 -10.18215 -9.85791 -9.37240 -8.74984 -8.53041 -7.65226 -7.52785 -6.67302 -5.16316 1.21637 1.96367 2.57626 2.64789 2.76863 2.81179 3.04095 3.10434 3.31319 3.48462 3.78688 4.13794 4.16402 5.02396 5.13470 5.23314 5.47518 5.82161 6.16412 6.22322 6.31733 6.40094 6.67431 6.77806 6.81637 7.05025 7.15529 7.41383 7.49332 7.73896 7.91689 8.07362 8.40169 8.65292 9.35567 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.010532 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.535270 B = 2657.984469 C = 3991.723341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.302 3.698 3 C -0.191 4.191 4 C 0.044 3.956 5 C -0.303 4.303 6 C 0.384 3.616 7 O -0.508 6.508 8 C 0.020 3.980 9 C -0.130 4.130 10 C -0.228 4.228 11 S 0.118 5.882 12 C -0.178 4.178 13 C 0.205 3.795 14 C -0.412 4.412 15 H 0.102 0.898 16 C 0.065 3.935 17 N -0.716 5.716 18 Si 0.911 3.089 19 H -0.254 1.254 20 H -0.267 1.267 21 H -0.253 1.253 22 H 0.114 0.886 23 H 0.078 0.922 24 H 0.144 0.856 25 H 0.150 0.850 26 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.756 -1.739 0.210 4.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.009 4.009 3 C -0.200 4.200 4 C 0.022 3.978 5 C -0.308 4.308 6 C 0.251 3.749 7 O -0.389 6.389 8 C 0.009 3.991 9 C -0.162 4.162 10 C -0.363 4.363 11 S 0.385 5.615 12 C -0.295 4.295 13 C 0.196 3.804 14 C -0.437 4.437 15 H 0.120 0.880 16 C -0.163 4.163 17 N -0.336 5.336 18 Si 0.732 3.268 19 H -0.178 1.178 20 H -0.192 1.192 21 H -0.176 1.176 22 H 0.132 0.868 23 H 0.094 0.906 24 H 0.161 0.839 25 H 0.168 0.832 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.677 -2.393 1.831 4.030 hybrid contribution 0.300 0.403 -0.577 0.765 sum 2.977 -1.990 1.254 3.794 Atomic orbital electron populations 1.81055 1.12496 1.13405 1.10921 1.25515 0.92381 0.91482 0.91473 1.16330 0.83455 1.16997 1.03233 1.20552 0.92446 0.90991 0.93787 1.20395 0.92341 1.17284 1.00762 1.23369 0.89008 0.76006 0.86535 1.90375 1.17607 1.52891 1.78032 1.19004 0.91592 0.95238 0.93282 1.20186 0.95245 1.02030 0.98712 1.25513 1.02976 1.07116 1.00708 1.83740 0.93879 1.58770 1.25085 1.22563 0.96683 1.11112 0.99122 1.17619 0.88029 0.85003 0.89731 1.19994 1.09151 1.23940 0.90651 0.88046 1.26240 0.93812 0.95612 1.00646 1.69593 1.18081 1.22801 1.23121 0.86150 0.81332 0.80677 0.78591 1.17804 1.19168 1.17609 0.86778 0.90627 0.83870 0.83204 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.26 18.54 41.84 0.78 -10.48 15 2 C 0.30 6.56 14.36 -22.47 -0.32 6.24 15 3 C -0.19 -4.09 5.92 -104.47 -0.62 -4.71 15 4 C 0.04 0.84 9.38 -39.01 -0.37 0.47 15 5 C -0.30 -6.01 6.06 -102.49 -0.62 -6.64 15 6 C 0.38 6.81 11.40 34.06 0.39 7.19 15 7 O -0.51 -10.39 15.09 5.49 0.08 -10.30 15 8 C 0.02 0.43 6.01 -104.82 -0.63 -0.20 15 9 C -0.13 -2.65 9.40 -40.67 -0.38 -3.03 15 10 C -0.23 -4.22 11.09 28.81 0.32 -3.90 15 11 S 0.12 2.36 19.90 -107.50 -2.14 0.22 15 12 C -0.18 -4.00 5.74 -37.66 -0.22 -4.21 15 13 C 0.20 4.68 5.52 -104.52 -0.58 4.10 15 14 C -0.41 -9.29 8.17 -38.00 -0.31 -9.60 15 15 H 0.10 2.27 7.70 -52.49 -0.40 1.87 15 16 C 0.07 1.37 4.24 -17.24 -0.07 1.30 15 17 N -0.72 -15.35 10.68 55.58 0.59 -14.76 15 18 Si 0.91 15.90 29.61 -169.99 -5.03 10.87 15 19 H -0.25 -4.33 7.11 56.52 0.40 -3.93 15 20 H -0.27 -4.52 7.11 56.52 0.40 -4.12 15 21 H -0.25 -4.49 7.11 56.52 0.40 -4.09 15 22 H 0.11 1.74 8.06 -52.49 -0.42 1.32 15 23 H 0.08 1.03 8.06 -52.49 -0.42 0.61 15 24 H 0.14 2.88 6.12 -52.48 -0.32 2.56 15 25 H 0.15 2.27 8.06 -52.48 -0.42 1.85 15 26 H 0.30 5.81 8.29 -40.82 -0.34 5.47 15 LS Contribution 258.71 15.07 3.90 3.90 Total: -1.00 -25.64 258.71 -6.36 -32.00 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -1.13 Total: 1.54 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -3.41 Total: -12.98 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 1.37 Total: -25.24 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 15.90 SS G_CDS: -5.03 Total: 10.87 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.14 Total: 0.22 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -25.64 -6.36 -32.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396285940.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.559 kcal (2) G-P(sol) polarization free energy of solvation -25.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds