Wall clock time and date at job start Mon Mar 30 2020 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38952 * 120.14605 * 119.85842 * 3 2 1 5 5 C 1.39074 * 120.49506 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.59860 * 180.27673 * 5 4 3 7 7 O 1.21355 * 119.99792 * 179.72914 * 6 5 4 8 8 C 1.47484 * 120.79846 * 0.02562 * 5 4 3 9 9 C 1.40474 * 128.62287 * 179.97438 * 8 5 4 10 10 C 1.32315 * 115.91122 * 180.02562 * 9 8 5 11 11 S 1.75499 * 110.68783 * 0.02562 * 10 9 8 12 12 C 1.39486 * 118.91514 * 0.02562 * 8 5 4 13 13 C 1.42040 * 120.10253 * 359.97438 * 12 8 5 14 14 C 1.40054 * 120.00787 * 179.97438 * 13 12 8 15 15 H 1.08002 * 119.99725 * 219.10646 * 14 13 12 16 16 C 1.40617 * 119.99982 * 39.10082 * 14 13 12 17 17 N 1.30449 * 119.99816 * 20.90172 * 16 14 13 18 18 Si 1.86802 * 120.00034 * 200.90179 * 16 14 13 19 19 H 1.48491 * 109.47224 * 90.00116 * 18 16 14 20 20 H 1.48501 * 109.46939 * 210.00349 * 18 16 14 21 21 H 1.48499 * 109.46996 * 329.99779 * 18 16 14 22 22 H 1.07995 * 119.75307 * 0.03953 * 4 3 2 23 23 H 1.07997 * 120.00347 * 359.72498 * 6 5 4 24 24 H 1.08003 * 122.04514 * 0.03210 * 9 8 5 25 25 H 1.08003 * 124.65606 * 180.02562 * 10 9 8 26 26 H 0.97002 * 119.99552 * 182.04902 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2656 0.5992 -1.0421 5 6 4.6563 0.6035 -1.0497 6 6 5.3719 1.2456 -2.1552 7 8 6.5853 1.2580 -2.1667 8 6 5.4195 -0.0255 0.0444 9 6 6.8123 -0.1169 0.2023 10 6 7.2310 -0.7429 1.2902 11 16 5.8698 -1.2954 2.2503 12 6 4.7236 -0.6286 1.0922 13 6 3.3032 -0.6307 1.0960 14 6 2.6066 -1.2373 2.1487 15 1 1.7083 -1.8021 1.9472 16 6 3.0767 -1.1110 3.4680 17 7 3.8841 -0.1357 3.7820 18 14 2.5449 -2.3397 4.7707 19 1 3.5029 -3.4738 4.8017 20 1 2.5218 -1.6747 6.0982 21 1 1.1872 -2.8471 4.4476 22 1 2.7238 1.0646 -1.8521 23 1 4.8195 1.7078 -2.9599 24 1 7.4994 0.2985 -0.5200 25 1 8.2681 -0.8931 1.5516 26 1 4.2319 -0.0658 4.6849 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396285940.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:01 Heat of formation + Delta-G solvation = 11.203556 kcal Electronic energy + Delta-G solvation = -15719.306142 eV Core-core repulsion = 13046.565454 eV Total energy + Delta-G solvation = -2672.740688 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.28152 -38.77302 -37.37555 -36.44724 -35.13571 -32.24891 -30.10734 -28.25906 -25.00848 -24.30558 -22.68223 -21.25081 -19.82068 -18.90534 -17.40902 -17.15837 -17.00860 -15.89203 -15.55273 -15.18980 -15.05648 -14.60827 -14.57598 -14.41393 -13.93430 -13.77799 -13.43370 -13.30494 -13.06671 -12.87533 -12.51262 -12.34612 -11.93967 -11.70433 -11.41675 -10.92146 -10.21177 -10.12870 -9.21021 -9.11786 -8.24766 -6.81960 -0.35687 0.43743 1.03718 1.18964 1.32444 1.44935 1.51295 1.54443 1.82276 2.05592 2.07828 2.49884 2.58223 3.40434 3.53204 3.88446 4.04404 4.41142 4.59465 4.72089 4.78813 4.89718 5.09904 5.21628 5.28868 5.49428 5.56352 5.84186 5.91442 6.11554 6.31588 6.45619 6.94346 7.00530 7.83856 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.010532 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.535270 B = 2657.984469 C = 3991.723341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C 0.311 3.689 3 C -0.214 4.214 4 C 0.056 3.944 5 C -0.313 4.313 6 C 0.393 3.607 7 O -0.534 6.534 8 C -0.001 4.001 9 C -0.150 4.150 10 C -0.209 4.209 11 S 0.121 5.879 12 C -0.209 4.209 13 C 0.186 3.814 14 C -0.442 4.442 15 H 0.090 0.910 16 C 0.042 3.958 17 N -0.741 5.741 18 Si 0.964 3.036 19 H -0.246 1.246 20 H -0.256 1.256 21 H -0.261 1.261 22 H 0.156 0.844 23 H 0.136 0.864 24 H 0.145 0.855 25 H 0.186 0.814 26 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.550 -1.510 -0.213 4.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.201 5.201 2 C 0.002 3.998 3 C -0.223 4.223 4 C 0.034 3.966 5 C -0.318 4.318 6 C 0.260 3.740 7 O -0.416 6.416 8 C -0.012 4.012 9 C -0.181 4.181 10 C -0.344 4.344 11 S 0.388 5.612 12 C -0.326 4.326 13 C 0.178 3.822 14 C -0.467 4.467 15 H 0.108 0.892 16 C -0.185 4.185 17 N -0.362 5.362 18 Si 0.782 3.218 19 H -0.169 1.169 20 H -0.180 1.180 21 H -0.185 1.185 22 H 0.173 0.827 23 H 0.152 0.848 24 H 0.163 0.837 25 H 0.204 0.796 26 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.474 -2.154 1.397 4.319 hybrid contribution 0.140 0.384 -0.537 0.675 sum 3.614 -1.769 0.860 4.115 Atomic orbital electron populations 1.81045 1.12962 1.14390 1.11713 1.25610 0.92426 0.90883 0.90868 1.16557 0.83272 1.18182 1.04276 1.20889 0.92221 0.89608 0.93858 1.20903 0.92955 1.16841 1.01096 1.23973 0.88581 0.74796 0.86645 1.90375 1.19083 1.53616 1.78490 1.19515 0.92539 0.95305 0.93848 1.20255 0.94764 1.03441 0.99673 1.25917 1.04239 1.04980 0.99298 1.83597 0.94005 1.58595 1.25050 1.22788 0.96964 1.12462 1.00347 1.17924 0.88696 0.85219 0.90379 1.20065 1.09472 1.25378 0.91798 0.89188 1.26791 0.93590 0.96594 1.01485 1.69590 1.18890 1.23659 1.24067 0.85399 0.80528 0.79010 0.76830 1.16934 1.17952 1.18480 0.82699 0.84778 0.83716 0.79646 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -23.50 18.54 19.00 0.35 -23.15 15 2 C 0.31 13.54 14.36 88.33 1.27 14.81 15 3 C -0.21 -9.12 5.92 -19.76 -0.12 -9.23 15 4 C 0.06 2.01 9.38 22.64 0.21 2.22 15 5 C -0.31 -11.87 6.06 -18.48 -0.11 -11.98 15 6 C 0.39 12.64 11.40 69.98 0.80 13.44 15 7 O -0.53 -20.57 15.09 -3.26 -0.05 -20.62 15 8 C 0.00 -0.04 6.01 -19.99 -0.12 -0.16 15 9 C -0.15 -5.94 9.40 21.74 0.20 -5.73 15 10 C -0.21 -7.39 11.09 66.75 0.74 -6.65 15 11 S 0.12 4.74 19.90 -56.49 -1.12 3.62 15 12 C -0.21 -9.40 5.74 23.51 0.13 -9.27 15 13 C 0.19 8.64 5.52 -19.80 -0.11 8.53 15 14 C -0.44 -20.38 8.17 23.29 0.19 -20.19 15 15 H 0.09 4.20 7.70 -2.91 -0.02 4.18 15 16 C 0.04 1.76 4.24 85.48 0.36 2.12 15 17 N -0.74 -31.88 10.68 21.94 0.23 -31.65 15 18 Si 0.96 32.34 29.61 68.60 2.03 34.37 15 19 H -0.25 -7.85 7.11 99.48 0.71 -7.15 15 20 H -0.26 -8.03 7.11 99.48 0.71 -7.33 15 21 H -0.26 -9.01 7.11 99.48 0.71 -8.30 15 22 H 0.16 4.15 8.06 -2.91 -0.02 4.13 15 23 H 0.14 2.90 8.06 -2.91 -0.02 2.87 15 24 H 0.15 5.64 6.12 -2.91 -0.02 5.63 15 25 H 0.19 5.06 8.06 -2.91 -0.02 5.04 15 26 H 0.31 11.88 8.29 -92.71 -0.77 11.11 15 Total: -1.00 -55.48 258.71 6.14 -49.34 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.24 Total: 10.18 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 3.45 Total: -22.09 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.59 Total: -54.80 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.05 Total: -20.62 kcal Atomic # 14 Polarization: 32.34 SS G_CDS: 2.03 Total: 34.37 kcal Atomic # 16 Polarization: 4.74 SS G_CDS: -1.12 Total: 3.62 kcal Total: -55.48 6.14 -49.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396285940.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.544 kcal (2) G-P(sol) polarization free energy of solvation -55.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds