Wall clock time and date at job start Mon Mar 30 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40736 * 120.04587 * 106.53628 * 3 2 1 5 5 S 1.75794 * 130.11632 * 359.95866 * 4 3 2 6 6 C 1.69963 * 93.22342 * 180.02562 * 5 4 3 7 7 C 1.36538 * 111.97592 * 359.97438 * 6 5 4 8 8 C 1.40860 * 123.27330 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00278 * 202.41695 * 8 7 6 10 10 C 1.39748 * 119.99771 * 22.41622 * 8 7 6 11 11 N 1.31050 * 120.00193 * 11.08867 * 10 8 7 12 12 Si 1.86797 * 120.00114 * 191.08876 * 10 8 7 13 13 H 1.48497 * 109.47184 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47562 * 120.00013 * 12 10 8 15 15 H 1.48506 * 109.47343 * 240.00075 * 12 10 8 16 16 C 1.39619 * 119.68221 * 180.02562 * 4 3 2 17 17 C 1.40788 * 119.57418 * 0.02562 * 16 4 3 18 18 C 1.37184 * 120.88077 * 359.97438 * 17 16 4 19 19 C 1.39934 * 120.29047 * 359.71995 * 18 17 16 20 20 C 1.46892 * 120.17041 * 180.28091 * 19 18 17 21 21 O 1.21293 * 119.99906 * 0.28015 * 20 19 18 22 22 H 1.08001 * 124.01315 * 180.02562 * 6 5 4 23 23 H 0.97000 * 120.00654 * 179.97438 * 11 10 8 24 24 H 1.08001 * 119.55896 * 180.02562 * 17 16 4 25 25 H 1.08000 * 119.85795 * 180.02562 * 18 17 16 26 26 H 1.08004 * 120.00192 * 180.27950 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2725 0.3477 -1.1679 5 16 2.6757 0.8172 -2.7534 6 6 4.2394 1.0073 -3.3916 7 6 5.2056 0.7343 -2.4663 8 6 6.5846 0.8164 -2.7417 9 1 7.2898 0.2661 -2.1366 10 6 7.0401 1.6101 -3.7979 11 7 6.2213 2.4429 -4.3923 12 14 8.8163 1.4840 -4.3624 13 1 9.5288 0.4783 -3.5341 14 1 8.8545 1.0687 -5.7876 15 1 9.4779 2.8052 -4.2139 16 6 4.6686 0.3453 -1.1595 17 6 5.3559 -0.0052 0.0182 18 6 4.6720 -0.3440 1.1581 19 6 3.2727 -0.3406 1.1691 20 6 2.5431 -0.6978 2.3929 21 8 3.1536 -0.9918 3.3989 22 1 4.4445 1.3091 -4.4081 23 1 6.5375 2.9940 -5.1252 24 1 6.4359 -0.0066 0.0245 25 1 5.2159 -0.6097 2.0525 26 1 1.4631 -0.6986 2.3970 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396285963.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:50 Heat of formation + Delta-G solvation = 14.006804 kcal Electronic energy + Delta-G solvation = -15267.452031 eV Core-core repulsion = 12594.832901 eV Total energy + Delta-G solvation = -2672.619130 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.05067 -39.50454 -37.89768 -36.58094 -34.23049 -32.47806 -30.60807 -28.12202 -25.89511 -24.74681 -22.74023 -21.65082 -19.90756 -18.56366 -17.87523 -17.70197 -16.79076 -16.30234 -15.73479 -15.66622 -15.53340 -14.85123 -14.73637 -14.36880 -14.03269 -14.00256 -13.74064 -13.20825 -13.18875 -12.78351 -12.53508 -12.25267 -11.90748 -11.76654 -11.31359 -11.09386 -10.94012 -10.36275 -9.34918 -8.69409 -8.54763 -6.31463 -0.84467 -0.04115 0.88330 1.05394 1.37446 1.41440 1.44582 1.57714 1.70814 1.83118 2.11965 2.24797 2.67975 2.78103 3.12191 3.33326 3.80486 4.11712 4.15790 4.38434 4.49886 4.65758 4.98731 5.14850 5.23093 5.36322 5.56708 5.78732 5.96319 6.22329 6.28200 6.45448 6.80017 6.92074 8.39049 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.027752 B = 0.006587 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.700641 B = 4249.602947 C = 5201.038893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.267 3.733 3 C 0.039 3.961 4 C -0.133 4.133 5 S 0.079 5.921 6 C -0.379 4.379 7 C 0.055 3.945 8 C -0.456 4.456 9 H 0.090 0.910 10 C 0.026 3.974 11 N -0.830 5.830 12 Si 0.985 3.015 13 H -0.250 1.250 14 H -0.273 1.273 15 H -0.271 1.271 16 C -0.056 4.056 17 C -0.053 4.053 18 C -0.077 4.077 19 C -0.132 4.132 20 C 0.400 3.600 21 O -0.473 6.473 22 H 0.142 0.858 23 H 0.284 0.716 24 H 0.149 0.851 25 H 0.165 0.835 26 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.296 -3.618 6.475 7.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.047 4.047 3 C 0.029 3.971 4 C -0.251 4.251 5 S 0.344 5.656 6 C -0.515 4.515 7 C 0.046 3.954 8 C -0.488 4.488 9 H 0.108 0.892 10 C -0.188 4.188 11 N -0.457 5.457 12 Si 0.806 3.194 13 H -0.174 1.174 14 H -0.198 1.198 15 H -0.196 1.196 16 C -0.067 4.067 17 C -0.073 4.073 18 C -0.099 4.099 19 C -0.138 4.138 20 C 0.260 3.740 21 O -0.346 6.346 22 H 0.160 0.840 23 H 0.094 0.906 24 H 0.166 0.834 25 H 0.183 0.817 26 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.131 -3.373 6.074 7.620 hybrid contribution 2.476 0.306 -0.627 2.572 sum -0.655 -3.067 5.447 6.285 Atomic orbital electron populations 1.81217 1.11822 1.09232 1.07727 1.25504 0.92331 0.93470 0.93417 1.15232 0.83475 1.05660 0.92760 1.22773 0.97174 1.06910 0.98231 1.81952 1.10128 1.72375 1.01191 1.24415 0.93758 1.28913 1.04449 1.17731 0.94946 0.94664 0.88033 1.19400 0.91642 1.24587 1.13216 0.89191 1.26692 1.04133 0.92662 0.95264 1.69918 1.38748 1.17698 1.19301 0.85093 0.76545 0.79165 0.78594 1.17355 1.19848 1.19636 1.20017 0.91416 0.99589 0.95689 1.21271 1.01343 0.94675 0.89982 1.21200 0.92089 0.97964 0.98647 1.20732 0.95249 1.03781 0.94042 1.24071 0.95552 0.70323 0.84094 1.90521 1.73696 1.35529 1.34883 0.84013 0.90573 0.83379 0.81733 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -13.50 18.54 19.00 0.35 -13.15 15 2 C 0.27 8.17 13.61 88.33 1.20 9.37 15 3 C 0.04 1.23 5.80 -20.82 -0.12 1.11 15 4 C -0.13 -5.10 6.30 23.21 0.15 -4.95 15 5 S 0.08 3.27 22.62 -56.49 -1.28 2.00 15 6 C -0.38 -18.72 9.51 67.42 0.64 -18.08 15 7 C 0.06 2.66 5.69 -20.87 -0.12 2.54 15 8 C -0.46 -21.93 9.06 23.28 0.21 -21.72 15 9 H 0.09 3.97 7.64 -2.91 -0.02 3.95 15 10 C 0.03 1.22 5.36 85.17 0.46 1.68 15 11 N -0.83 -41.57 10.79 21.80 0.24 -41.34 15 12 Si 0.98 35.78 29.57 68.60 2.03 37.80 15 13 H -0.25 -8.60 7.11 99.48 0.71 -7.89 15 14 H -0.27 -9.86 7.11 99.48 0.71 -9.15 15 15 H -0.27 -9.64 7.11 99.48 0.71 -8.93 15 16 C -0.06 -2.30 6.03 -20.16 -0.12 -2.42 15 17 C -0.05 -1.70 9.82 22.65 0.22 -1.47 15 18 C -0.08 -2.08 9.55 22.43 0.21 -1.86 15 19 C -0.13 -3.59 5.89 -20.00 -0.12 -3.71 15 20 C 0.40 9.31 10.99 70.09 0.77 10.08 15 21 O -0.47 -13.02 17.15 -3.07 -0.05 -13.07 15 22 H 0.14 7.65 6.26 -2.91 -0.02 7.63 15 23 H 0.28 13.01 8.30 -92.71 -0.77 12.24 15 24 H 0.15 4.31 7.83 -2.91 -0.02 4.28 15 25 H 0.17 3.62 7.63 -2.91 -0.02 3.60 15 26 H 0.13 2.30 7.18 -2.91 -0.02 2.28 15 Total: -1.00 -55.11 262.44 5.92 -49.19 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.24 Total: 8.01 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 3.39 Total: -29.44 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.59 Total: -54.49 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.05 Total: -13.07 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.80 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.28 Total: 2.00 kcal Total: -55.11 5.92 -49.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396285963.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.200 kcal (2) G-P(sol) polarization free energy of solvation -55.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds