Wall clock time and date at job start Mon Mar 30 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.38184 * 119.25987 * 272.41902 * 3 2 1 5 5 C 1.40793 * 119.98171 * 180.02562 * 4 3 2 6 6 C 1.40532 * 120.35889 * 179.97438 * 5 4 3 7 7 H 1.07998 * 119.99469 * 205.71479 * 6 5 4 8 8 C 1.40431 * 120.00021 * 25.71773 * 6 5 4 9 9 N 1.30541 * 120.00328 * 15.09890 * 8 6 5 10 10 Si 1.86806 * 120.00036 * 195.10285 * 8 6 5 11 11 H 1.48497 * 109.47061 * 89.99700 * 10 8 6 12 12 H 1.48491 * 109.47274 * 209.99778 * 10 8 6 13 13 H 1.48505 * 109.46759 * 329.99731 * 10 8 6 14 14 C 1.46151 * 119.27977 * 0.25503 * 5 4 3 15 15 C 1.41700 * 120.23522 * 179.72952 * 14 5 4 16 16 O 1.21421 * 120.00369 * 179.97438 * 15 14 5 17 17 C 1.42540 * 119.53512 * 359.49048 * 14 5 4 18 18 C 1.40593 * 128.53600 * 180.23058 * 17 14 5 19 19 C 1.32160 * 115.85896 * 180.26889 * 18 17 14 20 20 S 1.75450 * 110.85095 * 359.97438 * 19 18 17 21 21 C 1.40066 * 118.95248 * 0.50433 * 17 14 5 22 22 H 1.08008 * 120.00752 * 0.02562 * 4 3 2 23 23 H 0.97000 * 120.00053 * 180.02562 * 9 8 6 24 24 H 1.08000 * 119.99694 * 359.97438 * 15 14 5 25 25 H 1.08001 * 122.06950 * 0.24398 * 18 17 14 26 26 H 1.07993 * 124.57197 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2434 -0.0499 1.2045 5 6 4.6513 -0.0495 1.2222 6 6 5.3462 -0.1002 2.4426 7 1 6.3453 0.3039 2.5122 8 6 4.7416 -0.6764 3.5716 9 7 3.6772 -1.4196 3.4342 10 14 5.4602 -0.3792 5.2700 11 1 4.8409 0.8325 5.8645 12 1 5.1834 -1.5525 6.1369 13 1 6.9278 -0.1812 5.1587 14 6 5.3820 0.0105 -0.0421 15 6 6.7990 0.0178 -0.0476 16 8 7.4019 0.0672 -1.1004 17 6 4.6594 0.0564 -1.2699 18 6 5.1633 0.1120 -2.5812 19 6 4.2596 0.1519 -3.5448 20 16 2.6362 0.1219 -2.8800 21 6 3.2592 0.0536 -1.2330 22 1 2.6915 -0.0898 2.1320 23 1 3.2593 -1.8172 4.2140 24 1 7.3428 -0.0206 0.8848 25 1 6.2232 0.1219 -2.7883 26 1 4.4894 0.1961 -4.5990 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396286169.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:23 Heat of formation + Delta-G solvation = 25.235307 kcal Electronic energy + Delta-G solvation = -15591.827077 eV Core-core repulsion = 12919.694851 eV Total energy + Delta-G solvation = -2672.132226 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.04373 -37.12681 -35.94533 -35.49383 -33.34277 -30.92811 -28.76928 -26.18831 -24.52483 -22.87802 -20.42699 -20.12582 -18.30426 -17.25128 -16.28648 -16.04935 -15.08553 -14.39486 -13.94868 -13.74530 -13.64833 -13.13028 -12.95566 -12.93292 -12.60119 -12.13801 -12.06674 -11.91274 -11.55066 -11.30541 -11.14366 -10.84397 -10.57949 -10.27236 -10.01229 -9.70092 -8.61219 -8.38756 -7.78473 -7.60076 -7.08528 -5.07163 1.01760 1.81624 2.35426 2.59823 2.72633 2.74719 2.78001 3.07609 3.23401 3.26612 3.41949 4.04516 4.08917 4.60493 5.07192 5.47893 5.68553 5.96092 6.15699 6.23364 6.35012 6.41340 6.64148 6.82356 6.86378 6.94604 7.19427 7.30608 7.52854 7.71947 7.96609 8.05401 8.08782 8.80191 9.33881 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.020730 B = 0.008467 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.406925 B = 3306.064120 C = 4580.671832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.269 3.731 3 C 0.027 3.973 4 C -0.061 4.061 5 C 0.140 3.860 6 C -0.397 4.397 7 H 0.104 0.896 8 C 0.067 3.933 9 N -0.750 5.750 10 Si 0.927 3.073 11 H -0.259 1.259 12 H -0.270 1.270 13 H -0.252 1.252 14 C -0.305 4.305 15 C 0.384 3.616 16 O -0.533 6.533 17 C 0.037 3.963 18 C -0.117 4.117 19 C -0.201 4.201 20 S 0.024 5.976 21 C -0.214 4.214 22 H 0.143 0.857 23 H 0.300 0.700 24 H 0.076 0.924 25 H 0.155 0.845 26 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.072 1.258 0.454 2.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.046 4.046 3 C 0.020 3.980 4 C -0.085 4.085 5 C 0.135 3.865 6 C -0.422 4.422 7 H 0.122 0.878 8 C -0.159 4.159 9 N -0.371 5.371 10 Si 0.749 3.251 11 H -0.183 1.183 12 H -0.195 1.195 13 H -0.175 1.175 14 C -0.311 4.311 15 C 0.255 3.745 16 O -0.418 6.418 17 C 0.028 3.972 18 C -0.148 4.148 19 C -0.335 4.335 20 S 0.285 5.715 21 C -0.331 4.331 22 H 0.160 0.840 23 H 0.112 0.888 24 H 0.092 0.908 25 H 0.173 0.827 26 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.006 1.143 -0.640 1.652 hybrid contribution 1.750 -0.100 1.416 2.253 sum 0.744 1.043 0.776 1.498 Atomic orbital electron populations 1.81081 1.12257 1.10484 1.08625 1.26157 0.93145 0.92723 0.92547 1.15209 0.82759 1.07200 0.92861 1.21650 0.94860 0.97022 0.94979 1.18426 0.90612 0.85973 0.91462 1.20062 1.02267 1.27679 0.92235 0.87784 1.26390 0.94098 0.92277 1.03117 1.69593 1.15218 1.17423 1.34863 0.85945 0.81106 0.79596 0.78495 1.18346 1.19460 1.17498 1.20110 0.94863 1.25639 0.90524 1.21949 0.89120 0.71391 0.92023 1.90332 1.72349 1.42814 1.36304 1.17935 0.90255 0.95956 0.93023 1.20450 1.01773 1.01507 0.91067 1.25028 0.95207 1.10706 1.02570 1.83719 1.08535 1.80505 0.98720 1.21834 0.95802 1.21525 0.93950 0.83980 0.88814 0.90778 0.82743 0.82719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.54 18.54 41.84 0.78 -8.76 15 2 C 0.27 5.62 14.93 -22.47 -0.34 5.28 15 3 C 0.03 0.58 5.74 -106.76 -0.61 -0.03 15 4 C -0.06 -1.31 8.30 -38.64 -0.32 -1.63 15 5 C 0.14 3.02 5.72 -104.89 -0.60 2.42 15 6 C -0.40 -7.94 8.45 -37.89 -0.32 -8.26 15 7 H 0.10 1.90 6.58 -52.49 -0.35 1.56 15 8 C 0.07 1.26 5.19 -17.27 -0.09 1.17 15 9 N -0.75 -14.97 10.87 55.57 0.60 -14.37 15 10 Si 0.93 14.18 29.59 -169.99 -5.03 9.15 15 11 H -0.26 -3.98 7.11 56.52 0.40 -3.58 15 12 H -0.27 -4.13 7.11 56.52 0.40 -3.73 15 13 H -0.25 -3.80 7.11 56.52 0.40 -3.40 15 14 C -0.30 -6.66 5.98 -103.74 -0.62 -7.28 15 15 C 0.38 7.96 10.81 32.05 0.35 8.31 15 16 O -0.53 -11.94 14.86 5.44 0.08 -11.85 15 17 C 0.04 0.80 5.85 -106.67 -0.62 0.17 15 18 C -0.12 -2.34 9.32 -40.62 -0.38 -2.72 15 19 C -0.20 -3.54 11.08 28.81 0.32 -3.22 15 20 S 0.02 0.45 22.93 -107.50 -2.46 -2.02 15 21 C -0.21 -4.58 6.35 -37.67 -0.24 -4.82 15 22 H 0.14 3.01 6.14 -52.48 -0.32 2.69 15 23 H 0.30 5.36 8.29 -40.82 -0.34 5.02 15 24 H 0.08 1.37 6.49 -52.49 -0.34 1.03 15 25 H 0.16 3.11 6.01 -52.49 -0.32 2.80 15 26 H 0.16 2.18 8.06 -52.49 -0.42 1.76 15 LS Contribution 257.39 15.07 3.88 3.88 Total: -1.00 -23.94 257.39 -6.51 -30.45 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -0.88 Total: 4.13 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -3.47 Total: -10.61 kcal Atomic # 7 Polarization: -24.51 SS G_CDS: 1.38 Total: -23.13 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.08 Total: -11.85 kcal Atomic # 14 Polarization: 14.18 SS G_CDS: -5.03 Total: 9.15 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.46 Total: -2.02 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -23.94 -6.51 -30.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396286169.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.682 kcal (2) G-P(sol) polarization free energy of solvation -23.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds