Wall clock time and date at job start Mon Mar 30 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.33992 * 124.66603 * 174.94852 * 3 2 1 5 5 C 1.39945 * 115.59714 * 179.97438 * 4 3 2 6 6 C 1.40371 * 112.68908 * 359.97438 * 5 4 3 7 7 C 1.40470 * 120.38710 * 180.02562 * 6 5 4 8 8 C 1.35734 * 121.32071 * 359.97438 * 7 6 5 9 9 C 1.41066 * 120.33013 * 0.02847 * 8 7 6 10 10 C 1.40426 * 120.14387 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00192 * 152.38438 * 10 9 8 12 12 C 1.40478 * 119.99642 * 332.38818 * 10 9 8 13 13 N 1.30520 * 120.00029 * 335.47624 * 12 10 9 14 14 Si 1.86792 * 119.99887 * 155.47939 * 12 10 9 15 15 H 1.48504 * 109.47271 * 179.97438 * 14 12 10 16 16 H 1.48498 * 109.47456 * 299.99640 * 14 12 10 17 17 H 1.48495 * 109.47322 * 59.99730 * 14 12 10 18 18 C 1.41666 * 119.71633 * 0.22718 * 9 8 7 19 19 C 1.41644 * 120.20405 * 179.72473 * 18 9 8 20 20 O 1.21439 * 120.00105 * 179.97438 * 19 18 9 21 21 S 1.75456 * 124.67158 * 354.94469 * 3 2 1 22 22 H 1.07998 * 122.20411 * 0.02562 * 4 3 2 23 23 H 1.08004 * 119.33904 * 180.02562 * 7 6 5 24 24 H 1.08002 * 119.83254 * 180.02562 * 8 7 6 25 25 H 0.97004 * 120.00176 * 354.54304 * 13 12 10 26 26 H 1.08001 * 119.99765 * 0.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3297 1.0988 -0.0970 5 6 4.7118 0.8797 -0.0771 6 6 5.0429 -0.4790 0.0441 7 6 6.3881 -0.8819 0.0810 8 6 7.3978 0.0217 0.0009 9 6 7.1139 1.3980 -0.1218 10 6 8.1615 2.3295 -0.2039 11 1 8.0129 3.2651 -0.7224 12 6 9.4030 2.0443 0.3885 13 7 9.4733 1.2020 1.3831 14 14 10.9529 2.8705 -0.2471 15 1 12.1216 2.4042 0.5417 16 1 11.1493 2.5214 -1.6770 17 1 10.8203 4.3432 -0.1108 18 6 5.7674 1.8370 -0.1564 19 6 5.4706 3.2170 -0.2734 20 8 4.3151 3.5892 -0.3032 21 16 3.5668 -1.4363 0.1272 22 1 2.9050 2.0879 -0.1841 23 1 6.6236 -1.9319 0.1742 24 1 8.4236 -0.3148 0.0312 25 1 8.6613 0.8335 1.7650 26 1 6.2721 3.9382 -0.3370 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396286177.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:12 Heat of formation + Delta-G solvation = 18.766088 kcal Electronic energy + Delta-G solvation = -15432.401491 eV Core-core repulsion = 12759.988739 eV Total energy + Delta-G solvation = -2672.412752 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.34359 -37.08188 -36.75894 -35.55259 -33.42100 -30.87463 -29.05607 -26.04025 -24.57628 -22.96854 -21.29437 -20.04081 -18.36813 -17.75026 -16.62907 -15.44169 -15.09616 -14.48832 -14.16010 -13.99592 -13.80779 -13.45165 -13.39563 -13.09618 -12.54959 -12.40682 -12.22278 -12.10249 -11.59876 -11.31952 -10.83505 -10.73425 -10.52274 -10.35335 -10.08557 -9.55999 -8.85261 -8.47906 -7.95559 -7.91364 -7.26039 -5.11937 0.67366 1.66295 1.86321 2.43201 2.60000 2.88160 2.93861 3.08095 3.15858 3.47627 3.57610 3.59465 4.08081 4.19347 4.98048 5.44614 5.68549 5.71923 5.94788 6.08142 6.33089 6.36898 6.59280 6.76297 6.85949 7.00910 7.12686 7.24373 7.40471 7.56889 7.64477 7.98469 8.12677 8.74582 9.36946 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.034683 B = 0.006180 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.109370 B = 4529.590758 C = 5229.308067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.295 3.705 3 C -0.147 4.147 4 C -0.038 4.038 5 C 0.020 3.980 6 C -0.220 4.220 7 C -0.048 4.048 8 C -0.146 4.146 9 C 0.123 3.877 10 C -0.466 4.466 11 H 0.097 0.903 12 C 0.034 3.966 13 N -0.753 5.753 14 Si 1.069 2.931 15 H -0.268 1.268 16 H -0.268 1.268 17 H -0.268 1.268 18 C -0.311 4.311 19 C 0.383 3.617 20 O -0.536 6.536 21 S 0.101 5.899 22 H 0.162 0.838 23 H 0.108 0.892 24 H 0.123 0.877 25 H 0.306 0.694 26 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.658 -2.223 -1.497 3.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.020 4.020 3 C -0.265 4.265 4 C -0.075 4.075 5 C 0.013 3.987 6 C -0.336 4.336 7 C -0.070 4.070 8 C -0.167 4.167 9 C 0.118 3.882 10 C -0.491 4.491 11 H 0.115 0.885 12 C -0.193 4.193 13 N -0.374 5.374 14 Si 0.889 3.111 15 H -0.193 1.193 16 H -0.192 1.192 17 H -0.193 1.193 18 C -0.317 4.317 19 C 0.254 3.746 20 O -0.422 6.422 21 S 0.366 5.634 22 H 0.179 0.821 23 H 0.126 0.874 24 H 0.141 0.859 25 H 0.120 0.880 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.607 -3.636 -1.111 4.128 hybrid contribution -0.773 1.138 -0.250 1.398 sum 0.834 -2.498 -1.362 2.965 Atomic orbital electron populations 1.81201 1.11277 1.07591 1.10577 1.24513 0.91177 0.93505 0.92837 1.19351 0.88472 0.99098 1.19625 1.20723 0.92651 0.99111 0.95024 1.17844 0.91607 0.91941 0.97330 1.22391 0.96350 0.95584 1.19271 1.19892 0.89589 0.98627 0.98857 1.21186 0.98211 0.93247 1.04063 1.17586 0.91544 0.91958 0.87116 1.21009 0.96063 1.04375 1.27630 0.88515 1.27528 1.03849 0.94605 0.93312 1.70401 1.36645 1.16607 1.13752 0.83552 0.73340 0.76788 0.77375 1.19269 1.19250 1.19266 1.19023 0.91575 0.94270 1.26848 1.22029 0.90609 0.90616 0.71298 1.90333 1.24934 1.83562 1.43366 1.83521 0.95257 1.06176 1.78482 0.82073 0.87368 0.85948 0.87984 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.94 18.54 41.84 0.78 -7.16 15 2 C 0.29 5.25 15.76 -22.47 -0.35 4.90 15 3 C -0.15 -2.64 6.18 -39.15 -0.24 -2.88 15 4 C -0.04 -0.75 9.20 -40.44 -0.37 -1.12 15 5 C 0.02 0.43 5.84 -106.72 -0.62 -0.19 15 6 C -0.22 -4.26 6.52 -37.94 -0.25 -4.51 15 7 C -0.05 -0.89 9.96 -39.64 -0.39 -1.29 15 8 C -0.15 -2.92 7.84 -39.41 -0.31 -3.23 15 9 C 0.12 2.63 5.27 -106.69 -0.56 2.07 15 10 C -0.47 -9.63 8.24 -37.92 -0.31 -9.94 15 11 H 0.10 1.89 6.61 -52.49 -0.35 1.55 15 12 C 0.03 0.67 4.93 -17.27 -0.09 0.59 15 13 N -0.75 -15.84 12.36 55.58 0.69 -15.15 15 14 Si 1.07 16.80 30.00 -169.99 -5.10 11.70 15 15 H -0.27 -4.29 7.11 56.52 0.40 -3.89 15 16 H -0.27 -4.07 7.11 56.52 0.40 -3.67 15 17 H -0.27 -4.03 7.11 56.52 0.40 -3.63 15 18 C -0.31 -6.78 5.84 -105.56 -0.62 -7.40 15 19 C 0.38 8.14 10.75 32.03 0.34 8.48 15 20 O -0.54 -12.25 14.88 5.42 0.08 -12.17 15 21 S 0.10 1.68 23.23 -107.50 -2.50 -0.82 15 22 H 0.16 3.28 6.02 -52.49 -0.32 2.97 15 23 H 0.11 1.72 8.06 -52.48 -0.42 1.30 15 24 H 0.12 2.41 6.59 -52.49 -0.35 2.06 15 25 H 0.31 6.57 6.69 -40.82 -0.27 6.30 15 26 H 0.08 1.46 6.40 -52.49 -0.34 1.13 15 LS Contribution 257.02 15.07 3.87 3.87 Total: -1.00 -23.34 257.02 -6.79 -30.13 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -0.84 Total: 4.11 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -3.77 Total: -14.52 kcal Atomic # 7 Polarization: -23.77 SS G_CDS: 1.46 Total: -22.31 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.10 Total: 11.70 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.50 Total: -0.82 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -23.34 -6.79 -30.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396286177.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.900 kcal (2) G-P(sol) polarization free energy of solvation -23.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds