Wall clock time and date at job start Mon Mar 30 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.33992 * 124.66603 * 174.94852 * 3 2 1 5 5 C 1.39945 * 115.59714 * 179.97438 * 4 3 2 6 6 C 1.40371 * 112.68908 * 359.97438 * 5 4 3 7 7 C 1.40470 * 120.38710 * 180.02562 * 6 5 4 8 8 C 1.35734 * 121.32071 * 359.97438 * 7 6 5 9 9 C 1.41066 * 120.33013 * 0.02847 * 8 7 6 10 10 C 1.40426 * 120.14387 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00192 * 152.38438 * 10 9 8 12 12 C 1.40478 * 119.99642 * 332.38818 * 10 9 8 13 13 N 1.30520 * 120.00029 * 335.47624 * 12 10 9 14 14 Si 1.86792 * 119.99887 * 155.47939 * 12 10 9 15 15 H 1.48504 * 109.47271 * 179.97438 * 14 12 10 16 16 H 1.48498 * 109.47456 * 299.99640 * 14 12 10 17 17 H 1.48495 * 109.47322 * 59.99730 * 14 12 10 18 18 C 1.41666 * 119.71633 * 0.22718 * 9 8 7 19 19 C 1.41644 * 120.20405 * 179.72473 * 18 9 8 20 20 O 1.21439 * 120.00105 * 179.97438 * 19 18 9 21 21 S 1.75456 * 124.67158 * 354.94469 * 3 2 1 22 22 H 1.07998 * 122.20411 * 0.02562 * 4 3 2 23 23 H 1.08004 * 119.33904 * 180.02562 * 7 6 5 24 24 H 1.08002 * 119.83254 * 180.02562 * 8 7 6 25 25 H 0.97004 * 120.00176 * 354.54304 * 13 12 10 26 26 H 1.08001 * 119.99765 * 0.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3297 1.0988 -0.0970 5 6 4.7118 0.8797 -0.0771 6 6 5.0429 -0.4790 0.0441 7 6 6.3881 -0.8819 0.0810 8 6 7.3978 0.0217 0.0009 9 6 7.1139 1.3980 -0.1218 10 6 8.1615 2.3295 -0.2039 11 1 8.0129 3.2651 -0.7224 12 6 9.4030 2.0443 0.3885 13 7 9.4733 1.2020 1.3831 14 14 10.9529 2.8705 -0.2471 15 1 12.1216 2.4042 0.5417 16 1 11.1493 2.5214 -1.6770 17 1 10.8203 4.3432 -0.1108 18 6 5.7674 1.8370 -0.1564 19 6 5.4706 3.2170 -0.2734 20 8 4.3151 3.5892 -0.3032 21 16 3.5668 -1.4363 0.1272 22 1 2.9050 2.0879 -0.1841 23 1 6.6236 -1.9319 0.1742 24 1 8.4236 -0.3148 0.0312 25 1 8.6613 0.8335 1.7650 26 1 6.2721 3.9382 -0.3370 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396286177.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:12 Heat of formation + Delta-G solvation = 9.251711 kcal Electronic energy + Delta-G solvation = -15432.814066 eV Core-core repulsion = 12759.988739 eV Total energy + Delta-G solvation = -2672.825326 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.90560 -38.71061 -38.26806 -37.07740 -34.94539 -32.44746 -30.59024 -27.61831 -26.12815 -24.51763 -22.84112 -21.59294 -19.89590 -19.26124 -18.18291 -16.97405 -16.66450 -15.93894 -15.56718 -15.48313 -15.33169 -14.98957 -14.95247 -14.69159 -14.05154 -13.95431 -13.76482 -13.61810 -13.01680 -12.72538 -12.37223 -12.01951 -11.93921 -11.81513 -11.56321 -11.03288 -10.38697 -10.11554 -9.50309 -9.49151 -8.72279 -6.73144 -0.86815 0.22172 0.30495 0.93037 1.07360 1.59664 1.64466 1.68022 1.87006 1.90912 2.11114 2.29001 2.55844 2.71833 3.38352 3.94833 4.13574 4.19323 4.43866 4.54040 4.79878 4.82639 5.05370 5.19054 5.31620 5.43965 5.54980 5.65219 5.83168 6.00923 6.17728 6.40869 6.54525 7.11282 7.76799 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.034683 B = 0.006180 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.109370 B = 4529.590758 C = 5229.308067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.305 3.695 3 C -0.141 4.141 4 C -0.057 4.057 5 C 0.001 3.999 6 C -0.235 4.235 7 C -0.042 4.042 8 C -0.156 4.156 9 C 0.108 3.892 10 C -0.478 4.478 11 H 0.102 0.898 12 C 0.011 3.989 13 N -0.768 5.768 14 Si 1.114 2.886 15 H -0.272 1.272 16 H -0.257 1.257 17 H -0.255 1.255 18 C -0.341 4.341 19 C 0.379 3.621 20 O -0.561 6.561 21 S 0.180 5.820 22 H 0.149 0.851 23 H 0.140 0.860 24 H 0.123 0.877 25 H 0.296 0.704 26 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.194 -3.387 -1.727 4.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.010 4.010 3 C -0.260 4.260 4 C -0.095 4.095 5 C -0.007 4.007 6 C -0.351 4.351 7 C -0.063 4.063 8 C -0.178 4.178 9 C 0.103 3.897 10 C -0.503 4.503 11 H 0.120 0.880 12 C -0.212 4.212 13 N -0.388 5.388 14 Si 0.930 3.070 15 H -0.196 1.196 16 H -0.182 1.182 17 H -0.180 1.180 18 C -0.348 4.348 19 C 0.253 3.747 20 O -0.449 6.449 21 S 0.447 5.553 22 H 0.166 0.834 23 H 0.158 0.842 24 H 0.141 0.859 25 H 0.109 0.891 26 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.125 -4.821 -1.339 5.436 hybrid contribution -0.998 1.384 -0.159 1.714 sum 1.127 -3.436 -1.498 3.914 Atomic orbital electron populations 1.81217 1.11508 1.07984 1.10698 1.24373 0.90940 0.93143 0.92576 1.19449 0.88594 0.99771 1.18228 1.20539 0.92498 0.99205 0.97247 1.18036 0.91986 0.92788 0.97905 1.22768 0.98033 0.95872 1.18467 1.20205 0.88980 1.00010 0.97138 1.21241 0.98711 0.93032 1.04797 1.17845 0.91640 0.92959 0.87217 1.21274 0.96605 1.04703 1.27704 0.87982 1.28674 1.05919 0.94064 0.92556 1.70490 1.36047 1.17567 1.14697 0.82994 0.70122 0.76624 0.77243 1.19627 1.18163 1.17952 1.19193 0.92211 0.94732 1.28640 1.22243 0.90583 0.91049 0.70860 1.90313 1.25745 1.83837 1.45017 1.83231 0.92240 1.03437 1.76410 0.83382 0.84179 0.85872 0.89076 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -15.49 18.54 19.01 0.35 -15.13 15 2 C 0.31 10.39 15.76 88.33 1.39 11.78 15 3 C -0.14 -4.88 6.18 22.55 0.14 -4.75 15 4 C -0.06 -2.25 9.20 21.72 0.20 -2.05 15 5 C 0.00 0.04 5.84 -21.22 -0.12 -0.09 15 6 C -0.24 -8.74 6.52 23.33 0.15 -8.59 15 7 C -0.04 -1.49 9.96 22.23 0.22 -1.27 15 8 C -0.16 -6.18 7.84 22.38 0.18 -6.00 15 9 C 0.11 4.65 5.27 -21.21 -0.11 4.54 15 10 C -0.48 -19.71 8.24 23.35 0.19 -19.52 15 11 H 0.10 3.98 6.61 -2.91 -0.02 3.96 15 12 C 0.01 0.42 4.93 85.43 0.42 0.85 15 13 N -0.77 -31.99 12.36 21.92 0.27 -31.72 15 14 Si 1.11 32.49 30.00 68.60 2.06 34.55 15 15 H -0.27 -8.05 7.11 99.48 0.71 -7.34 15 16 H -0.26 -7.07 7.11 99.48 0.71 -6.36 15 17 H -0.26 -6.92 7.11 99.48 0.71 -6.22 15 18 C -0.34 -15.13 5.84 -20.47 -0.12 -15.25 15 19 C 0.38 16.51 10.75 68.66 0.74 17.25 15 20 O -0.56 -26.41 14.88 -3.52 -0.05 -26.46 15 21 S 0.18 5.51 23.23 -56.49 -1.31 4.20 15 22 H 0.15 6.21 6.02 -2.91 -0.02 6.19 15 23 H 0.14 4.00 8.06 -2.91 -0.02 3.98 15 24 H 0.12 4.78 6.59 -2.91 -0.02 4.76 15 25 H 0.30 12.77 6.69 -92.71 -0.62 12.15 15 26 H 0.09 3.58 6.40 -2.91 -0.02 3.57 15 Total: -1.00 -48.97 257.02 6.00 -42.97 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 1.40 Total: 14.69 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 3.28 Total: -23.10 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.62 Total: -46.85 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.05 Total: -26.46 kcal Atomic # 14 Polarization: 32.49 SS G_CDS: 2.06 Total: 34.55 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -1.31 Total: 4.20 kcal Total: -48.97 6.00 -42.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396286177.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.222 kcal (2) G-P(sol) polarization free energy of solvation -48.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds