Wall clock time and date at job start Mon Mar 30 2020 06:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.35227 * 123.07915 * 75.15444 * 3 2 1 5 5 S 1.69942 * 112.20052 * 180.02562 * 4 3 2 6 6 C 1.76014 * 93.11268 * 0.02562 * 5 4 3 7 7 C 1.39201 * 129.53723 * 180.32267 * 6 5 4 8 8 C 1.40199 * 120.50433 * 180.16476 * 7 6 5 9 9 C 1.40401 * 120.53752 * 179.77042 * 8 7 6 10 10 H 1.08001 * 120.00255 * 147.03057 * 9 8 7 11 11 C 1.40249 * 119.99696 * 327.02834 * 9 8 7 12 12 N 1.30669 * 119.99828 * 339.07565 * 11 9 8 13 13 Si 1.86794 * 120.00046 * 159.07711 * 11 9 8 14 14 H 1.48502 * 109.47315 * 179.97438 * 13 11 9 15 15 H 1.48498 * 109.47097 * 299.99953 * 13 11 9 16 16 H 1.48500 * 109.47268 * 59.99602 * 13 11 9 17 17 C 1.47013 * 118.92131 * 359.48552 * 8 7 6 18 18 C 1.46338 * 120.47315 * 180.23240 * 17 8 7 19 19 O 1.21369 * 120.00209 * 358.12408 * 18 17 8 20 20 C 1.38644 * 119.05124 * 0.25816 * 17 8 7 21 21 C 1.40240 * 109.83771 * 359.97438 * 6 5 4 22 22 H 1.07997 * 123.90014 * 0.03626 * 4 3 2 23 23 H 1.07999 * 119.74637 * 359.93066 * 7 6 5 24 24 H 0.97002 * 120.00310 * 353.33042 * 12 11 9 25 25 H 1.08003 * 119.99277 * 178.12588 * 18 17 8 26 26 H 1.07992 * 119.69679 * 179.97438 * 20 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3062 -0.2893 -1.0953 5 16 4.9750 -0.2071 -0.7851 6 6 4.7370 0.2385 0.9010 7 6 5.6808 0.5060 1.8886 8 6 5.2755 0.8444 3.1874 9 6 6.2268 1.1096 4.1853 10 1 6.0137 1.8364 4.9552 11 6 7.4540 0.4305 4.1823 12 7 7.5721 -0.7026 3.5424 13 14 8.9195 1.1460 5.0932 14 1 10.0881 0.2430 4.9375 15 1 9.2471 2.4814 4.5323 16 1 8.5883 1.2822 6.5343 17 6 3.8381 0.9232 3.4858 18 6 3.3772 1.2783 4.8285 19 8 4.1832 1.4770 5.7140 20 6 2.9254 0.6556 2.4769 21 6 3.3655 0.3138 1.1843 22 1 2.8839 -0.5437 -2.0562 23 1 6.7333 0.4487 1.6535 24 1 6.7900 -1.1228 3.1516 25 1 2.3199 1.3635 5.0315 26 1 1.8671 0.7101 2.6847 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396286182.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:42 Heat of formation + Delta-G solvation = 6.407745 kcal Electronic energy + Delta-G solvation = -15460.080539 eV Core-core repulsion = 12787.131889 eV Total energy + Delta-G solvation = -2672.948650 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.44876 -39.18623 -37.80429 -36.55104 -34.67833 -31.87742 -30.69036 -27.50772 -25.80377 -24.64404 -23.22110 -21.41894 -20.10261 -18.56522 -18.05575 -17.44419 -16.56604 -15.90663 -15.76919 -15.30963 -15.24906 -14.89899 -14.60187 -14.46030 -14.22728 -13.93342 -13.68203 -13.42982 -13.15142 -12.83577 -12.37369 -12.00913 -11.80322 -11.64454 -11.49839 -11.00412 -10.45997 -10.25725 -9.53451 -9.17994 -8.62831 -6.54526 -0.26657 -0.00544 0.64754 0.88833 1.05068 1.50988 1.53981 1.61889 1.78170 1.80512 2.27012 2.33084 2.65625 3.09092 3.32115 3.63530 3.82294 4.07151 4.50835 4.68175 4.69863 4.84047 4.90874 5.12053 5.37681 5.47800 5.54902 5.64611 5.94395 6.03417 6.41237 6.56592 6.68002 6.93477 7.87641 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.024253 B = 0.007380 C = 0.005791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.217943 B = 3793.352934 C = 4833.689805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.300 3.700 3 C -0.023 4.023 4 C -0.191 4.191 5 S 0.173 5.827 6 C -0.090 4.090 7 C -0.212 4.212 8 C 0.100 3.900 9 C -0.477 4.477 10 H 0.094 0.906 11 C 0.001 3.999 12 N -0.788 5.788 13 Si 1.113 2.887 14 H -0.265 1.265 15 H -0.257 1.257 16 H -0.266 1.266 17 C -0.297 4.297 18 C 0.376 3.624 19 O -0.508 6.508 20 C 0.018 3.982 21 C -0.199 4.199 22 H 0.203 0.797 23 H 0.099 0.901 24 H 0.290 0.710 25 H 0.128 0.872 26 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 0.728 -6.155 6.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.015 4.015 3 C -0.042 4.042 4 C -0.330 4.330 5 S 0.439 5.561 6 C -0.205 4.205 7 C -0.238 4.238 8 C 0.094 3.906 9 C -0.504 4.504 10 H 0.112 0.888 11 C -0.218 4.218 12 N -0.410 5.410 13 Si 0.929 3.071 14 H -0.189 1.189 15 H -0.182 1.182 16 H -0.190 1.190 17 C -0.299 4.299 18 C 0.241 3.759 19 O -0.387 6.387 20 C -0.002 4.002 21 C -0.205 4.205 22 H 0.220 0.780 23 H 0.117 0.883 24 H 0.102 0.898 25 H 0.144 0.856 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.425 0.279 -6.396 6.416 hybrid contribution -2.612 0.266 0.456 2.665 sum -3.037 0.545 -5.939 6.693 Atomic orbital electron populations 1.81202 1.12340 1.11138 1.08918 1.25167 0.91830 0.92185 0.92340 1.15808 0.84250 1.10120 0.94014 1.25182 0.99080 1.06043 1.02731 1.82744 1.01041 1.70824 1.01484 1.22636 0.96183 1.02942 0.98689 1.20317 0.96673 1.14865 0.91939 1.18731 0.91560 0.88374 0.91959 1.21226 0.99822 1.19176 1.10159 0.88773 1.28602 1.04126 0.93907 0.95178 1.70492 1.35778 1.13394 1.21314 0.83042 0.71422 0.76691 0.75905 1.18926 1.18164 1.19030 1.21786 0.93597 1.17360 0.97193 1.23918 0.94922 0.71524 0.85503 1.90452 1.60379 1.39665 1.48186 1.20963 0.98492 0.90769 0.89955 1.18300 0.90710 1.17177 0.94293 0.78029 0.88305 0.89766 0.85592 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -15.10 18.54 19.00 0.35 -14.75 15 2 C 0.30 9.25 15.36 88.33 1.36 10.61 15 3 C -0.02 -0.72 5.85 -20.67 -0.12 -0.84 15 4 C -0.19 -4.88 10.62 67.13 0.71 -4.17 15 5 S 0.17 5.01 22.98 -56.49 -1.30 3.72 15 6 C -0.09 -3.51 6.42 22.99 0.15 -3.37 15 7 C -0.21 -9.69 7.95 22.98 0.18 -9.51 15 8 C 0.10 4.90 5.31 -19.97 -0.11 4.79 15 9 C -0.48 -24.25 7.81 23.29 0.18 -24.07 15 10 H 0.09 4.98 5.94 -2.91 -0.02 4.96 15 11 C 0.00 0.06 5.00 85.35 0.43 0.49 15 12 N -0.79 -39.30 12.50 21.88 0.27 -39.03 15 13 Si 1.11 41.16 29.98 68.60 2.06 43.22 15 14 H -0.27 -9.45 7.11 99.48 0.71 -8.75 15 15 H -0.26 -8.87 7.11 99.48 0.71 -8.17 15 16 H -0.27 -9.55 7.11 99.48 0.71 -8.84 15 17 C -0.30 -12.73 6.03 -18.77 -0.11 -12.84 15 18 C 0.38 14.78 11.41 69.93 0.80 15.58 15 19 O -0.51 -23.97 14.53 -3.31 -0.05 -24.01 15 20 C 0.02 0.68 9.55 22.98 0.22 0.90 15 21 C -0.20 -7.39 6.03 -20.11 -0.12 -7.51 15 22 H 0.20 3.55 8.06 -2.91 -0.02 3.52 15 23 H 0.10 4.73 6.89 -2.91 -0.02 4.71 15 24 H 0.29 14.93 6.72 -92.71 -0.62 14.30 15 25 H 0.13 3.58 8.06 -2.91 -0.02 3.56 15 26 H 0.14 4.16 8.02 -2.91 -0.02 4.13 15 Total: -1.00 -57.63 260.85 6.29 -51.34 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.39 Total: 9.44 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 3.56 Total: -29.93 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.63 Total: -53.78 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.06 Total: 43.22 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -1.30 Total: 3.72 kcal Total: -57.63 6.29 -51.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396286182.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.749 kcal (2) G-P(sol) polarization free energy of solvation -57.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds