Wall clock time and date at job start Mon Mar 30 2020 06:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.38419 * 120.47740 * 115.02129 * 3 2 1 5 5 C 1.40017 * 120.73446 * 180.24639 * 4 3 2 6 6 S 1.76235 * 129.63151 * 179.74957 * 5 4 3 7 7 C 1.75401 * 91.71286 * 180.02562 * 6 5 4 8 8 C 1.46226 * 124.61227 * 180.02562 * 7 6 5 9 9 O 1.21355 * 120.00342 * 359.97438 * 8 7 6 10 10 C 1.33974 * 110.76817 * 0.02562 * 7 6 5 11 11 C 1.40605 * 115.57263 * 359.97438 * 10 7 6 12 12 C 1.40953 * 127.89216 * 179.97438 * 11 10 7 13 13 C 1.39724 * 120.48073 * 179.97438 * 12 11 10 14 14 C 1.40750 * 120.39477 * 180.02562 * 13 12 11 15 15 H 1.08006 * 120.00085 * 205.18569 * 14 13 12 16 16 C 1.40116 * 120.00043 * 25.18767 * 14 13 12 17 17 N 1.30753 * 119.99802 * 26.66605 * 16 14 13 18 18 Si 1.86800 * 119.99846 * 206.65966 * 16 14 13 19 19 H 1.48499 * 109.47205 * 180.02562 * 18 16 14 20 20 H 1.48502 * 109.47132 * 299.99828 * 18 16 14 21 21 H 1.48500 * 109.47453 * 60.00365 * 18 16 14 22 22 H 1.07994 * 119.62868 * 0.04270 * 4 3 2 23 23 H 1.08000 * 119.99434 * 179.97438 * 8 7 6 24 24 H 1.07995 * 122.21668 * 180.02562 * 10 7 6 25 25 H 1.07995 * 119.75976 * 0.02562 * 12 11 10 26 26 H 0.96993 * 120.00246 * 5.78438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 0.5055 -1.0810 5 6 4.6700 0.5041 -1.0889 6 16 5.7877 1.0744 -2.3263 7 6 7.1764 0.6185 -1.3567 8 6 8.5692 0.8021 -1.7627 9 8 8.8270 1.3007 -2.8386 10 6 6.7874 0.0793 -0.1937 11 6 5.3975 -0.0056 0.0012 12 6 4.7098 -0.5225 1.1177 13 6 3.3129 -0.5303 1.1485 14 6 2.6281 -1.0464 2.2646 15 1 1.6241 -1.4287 2.1528 16 6 3.2487 -1.0641 3.5207 17 7 4.1785 -0.1893 3.8029 18 14 2.7474 -2.3375 4.7922 19 1 3.5471 -2.1441 6.0284 20 1 1.3046 -2.1813 5.1071 21 1 2.9917 -3.6991 4.2522 22 1 2.7314 0.9019 -1.9291 23 1 9.3684 0.4938 -1.1049 24 1 7.4945 -0.2666 0.5457 25 1 5.2666 -0.9146 1.9559 26 1 4.3802 0.5232 3.1765 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396286553.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:12 Heat of formation + Delta-G solvation = 4.624737 kcal Electronic energy + Delta-G solvation = -15176.423280 eV Core-core repulsion = 12503.397313 eV Total energy + Delta-G solvation = -2673.025967 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.38306 -39.80233 -37.67349 -36.75681 -35.08678 -31.49789 -31.09585 -27.59185 -26.37588 -23.79054 -22.91510 -21.60862 -20.19193 -19.27980 -17.94240 -17.27518 -16.54846 -16.08966 -15.71703 -15.48645 -15.39483 -14.93633 -14.75652 -14.36802 -14.30296 -13.89992 -13.76078 -13.40628 -13.11060 -12.80343 -12.19379 -12.00073 -11.83905 -11.67951 -11.40480 -10.99835 -10.95530 -10.45130 -9.54735 -9.27108 -8.72600 -6.59165 -0.83631 0.60176 0.65994 0.71269 1.20301 1.53363 1.56337 1.78294 1.79991 1.83120 2.26238 2.28886 2.54989 3.24656 3.29793 3.38167 3.90902 4.24298 4.38620 4.58178 4.61085 4.79027 4.92512 5.11164 5.19700 5.38167 5.50183 5.61475 5.87269 5.94772 6.36878 6.41524 6.57660 6.68262 7.85232 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.006631 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.968821 B = 4221.262306 C = 5318.004442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.300 3.700 3 C -0.140 4.140 4 C 0.011 3.989 5 C -0.252 4.252 6 S 0.071 5.929 7 C -0.267 4.267 8 C 0.422 3.578 9 O -0.501 6.501 10 C -0.044 4.044 11 C -0.034 4.034 12 C -0.196 4.196 13 C 0.104 3.896 14 C -0.510 4.510 15 H 0.071 0.929 16 C 0.016 3.984 17 N -0.776 5.776 18 Si 1.108 2.892 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.258 1.258 22 H 0.130 0.870 23 H 0.179 0.821 24 H 0.181 0.819 25 H 0.119 0.881 26 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.643 -1.523 -1.487 8.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.011 4.011 3 C -0.147 4.147 4 C -0.014 4.014 5 C -0.367 4.367 6 S 0.335 5.665 7 C -0.384 4.384 8 C 0.282 3.718 9 O -0.376 6.376 10 C -0.078 4.078 11 C -0.041 4.041 12 C -0.219 4.219 13 C 0.098 3.902 14 C -0.537 4.537 15 H 0.089 0.911 16 C -0.206 4.206 17 N -0.396 5.396 18 Si 0.925 3.075 19 H -0.187 1.187 20 H -0.194 1.194 21 H -0.182 1.182 22 H 0.147 0.853 23 H 0.195 0.805 24 H 0.198 0.802 25 H 0.137 0.863 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.302 -1.057 -2.032 7.653 hybrid contribution -0.386 0.117 -0.220 0.459 sum 6.916 -0.939 -2.252 7.334 Atomic orbital electron populations 1.81048 1.12801 1.13064 1.10785 1.25706 0.92653 0.91501 0.91249 1.16907 0.83309 1.14155 1.00355 1.20137 0.91175 0.94346 0.95709 1.22253 0.96614 1.17091 1.00702 1.83898 0.94880 1.67563 1.20133 1.25153 1.00785 1.11772 1.00694 1.24073 0.88682 0.72007 0.87068 1.90563 1.86687 1.34808 1.25521 1.20790 0.94556 0.95902 0.96536 1.18389 0.93174 0.98453 0.94050 1.20932 0.92572 1.09654 0.98744 1.18362 0.91966 0.88923 0.90917 1.20799 1.03121 1.34811 0.94957 0.91052 1.28340 0.91548 0.99879 1.00829 1.70543 1.22443 1.08438 1.38202 0.83085 0.77310 0.73683 0.73461 1.18677 1.19397 1.18185 0.85264 0.80539 0.80202 0.86303 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.77 18.54 19.00 0.35 -22.41 15 2 C 0.30 13.31 14.27 88.33 1.26 14.57 15 3 C -0.14 -6.05 5.92 -19.74 -0.12 -6.16 15 4 C 0.01 0.43 9.75 22.74 0.22 0.65 15 5 C -0.25 -9.40 6.48 23.28 0.15 -9.25 15 6 S 0.07 2.32 23.00 -56.49 -1.30 1.02 15 7 C -0.27 -7.39 6.29 23.38 0.15 -7.25 15 8 C 0.42 9.17 11.58 69.90 0.81 9.98 15 9 O -0.50 -14.86 17.69 -3.26 -0.06 -14.92 15 10 C -0.04 -1.23 10.01 21.88 0.22 -1.02 15 11 C -0.03 -1.25 5.84 -21.46 -0.13 -1.38 15 12 C -0.20 -8.12 8.01 23.29 0.19 -7.94 15 13 C 0.10 4.74 5.44 -20.06 -0.11 4.63 15 14 C -0.51 -23.84 8.48 23.34 0.20 -23.64 15 15 H 0.07 3.46 7.44 -2.91 -0.02 3.43 15 16 C 0.02 0.70 4.90 85.31 0.42 1.11 15 17 N -0.78 -34.81 12.32 21.86 0.27 -34.54 15 18 Si 1.11 37.32 30.01 68.60 2.06 39.38 15 19 H -0.26 -8.55 7.11 99.48 0.71 -7.84 15 20 H -0.27 -8.88 7.11 99.48 0.71 -8.18 15 21 H -0.26 -8.16 7.11 99.48 0.71 -7.46 15 22 H 0.13 4.37 8.06 -2.91 -0.02 4.35 15 23 H 0.18 1.77 8.06 -2.91 -0.02 1.74 15 24 H 0.18 3.64 8.06 -2.91 -0.02 3.62 15 25 H 0.12 4.94 6.47 -2.91 -0.02 4.92 15 26 H 0.30 13.60 6.79 -92.71 -0.63 12.97 15 Total: -1.00 -55.55 264.71 5.96 -49.59 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.38 Total: 7.57 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 3.26 Total: -25.69 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.62 Total: -56.95 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.06 Total: -14.92 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.06 Total: 39.38 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.30 Total: 1.02 kcal Total: -55.55 5.96 -49.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396286553.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.213 kcal (2) G-P(sol) polarization free energy of solvation -55.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds