Wall clock time and date at job start Mon Mar 30 2020 06:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 S 1.75208 * 124.57680 * 140.92342 * 3 2 1 5 5 C 1.75847 * 92.64421 * 180.02562 * 4 3 2 6 6 C 1.39239 * 110.59314 * 0.02562 * 5 4 3 7 7 C 1.41217 * 119.11250 * 179.97438 * 6 5 4 8 8 C 1.37811 * 120.99527 * 359.97438 * 7 6 5 9 9 C 1.37865 * 120.67755 * 359.82434 * 8 7 6 10 10 C 1.40327 * 119.86706 * 0.41010 * 9 8 7 11 11 C 1.40856 * 120.06725 * 179.82471 * 10 9 8 12 12 H 1.08002 * 119.99821 * 154.51681 * 11 10 9 13 13 C 1.40045 * 120.00267 * 334.52255 * 11 10 9 14 14 N 1.30791 * 119.99876 * 342.34788 * 13 11 10 15 15 Si 1.86802 * 119.99970 * 162.35620 * 13 11 10 16 16 H 1.48501 * 109.47312 * 94.64239 * 15 13 11 17 17 H 1.48503 * 109.46926 * 214.64199 * 15 13 11 18 18 H 1.48504 * 109.47181 * 334.63976 * 15 13 11 19 19 C 1.36994 * 124.57677 * 320.92614 * 3 2 1 20 20 C 1.41826 * 123.14240 * 0.03586 * 19 3 2 21 21 O 1.21386 * 120.00179 * 179.97438 * 20 19 3 22 22 H 1.07996 * 119.50001 * 180.02562 * 7 6 5 23 23 H 1.07997 * 119.66572 * 179.97438 * 8 7 6 24 24 H 1.07996 * 120.06636 * 180.21450 * 9 8 7 25 25 H 0.97005 * 120.00055 * 179.97438 * 14 13 11 26 26 H 1.07998 * 119.99996 * 359.96409 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5618 1.1210 -0.9094 5 6 5.0545 0.3991 -0.3237 6 6 4.7812 -0.6613 0.5363 7 6 5.8561 -1.3729 1.1128 8 6 7.1624 -1.0326 0.8357 9 6 7.4515 0.0118 -0.0166 10 6 6.4083 0.7441 -0.6036 11 6 6.6989 1.8143 -1.4721 12 1 5.9822 2.1090 -2.2244 13 6 7.9170 2.4961 -1.3601 14 7 8.6276 2.3902 -0.2672 15 14 8.5267 3.5570 -2.7715 16 1 8.1148 4.9658 -2.5458 17 1 10.0080 3.4800 -2.8446 18 1 7.9422 3.0686 -4.0463 19 6 3.3458 -0.8747 0.7110 20 6 2.8085 -1.8942 1.5376 21 8 3.5515 -2.6396 2.1425 22 1 5.6513 -2.1968 1.7803 23 1 7.9680 -1.5911 1.2888 24 1 8.4789 0.2679 -0.2296 25 1 9.4716 2.8621 -0.1897 26 1 1.7384 -2.0073 1.6290 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396286864.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:01 Heat of formation + Delta-G solvation = 29.511038 kcal Electronic energy + Delta-G solvation = -15364.706455 eV Core-core repulsion = 12692.759639 eV Total energy + Delta-G solvation = -2671.946816 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.38499 -37.59950 -36.77471 -34.79976 -33.35686 -30.20742 -28.99669 -26.17465 -25.24624 -22.50776 -21.48128 -19.86233 -17.94973 -17.39718 -16.69544 -15.61237 -15.39013 -14.56647 -14.43002 -14.13165 -13.66485 -13.45042 -13.44266 -13.00906 -12.67138 -12.34071 -12.28714 -11.70425 -11.42037 -11.25155 -10.93851 -10.61524 -10.37425 -10.15983 -9.65471 -9.46536 -9.30702 -8.59933 -7.63959 -7.18024 -7.03448 -4.65898 0.31852 1.59010 2.26228 2.50644 2.66542 2.87680 2.91940 2.94949 2.95589 3.03021 3.64125 3.70360 3.94324 4.35746 4.62969 5.25064 5.55288 5.68031 5.86988 6.24849 6.34668 6.62731 6.83859 6.87247 7.05952 7.38293 7.42821 7.56175 7.68241 7.78375 7.88425 8.24146 8.44873 8.52639 9.83481 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.025710 B = 0.007216 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.829268 B = 3879.330964 C = 4887.296958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.285 3.715 3 C -0.101 4.101 4 S 0.190 5.810 5 C -0.218 4.218 6 C -0.020 4.020 7 C -0.203 4.203 8 C -0.079 4.079 9 C -0.164 4.164 10 C 0.145 3.855 11 C -0.453 4.453 12 H 0.083 0.917 13 C 0.079 3.921 14 N -0.774 5.774 15 Si 0.911 3.089 16 H -0.267 1.267 17 H -0.272 1.272 18 H -0.257 1.257 19 C -0.131 4.131 20 C 0.389 3.611 21 O -0.450 6.450 22 H 0.115 0.885 23 H 0.100 0.900 24 H 0.127 0.873 25 H 0.287 0.713 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.032 -0.776 -1.377 3.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.031 4.031 3 C -0.223 4.223 4 S 0.462 5.538 5 C -0.335 4.335 6 C -0.024 4.024 7 C -0.225 4.225 8 C -0.098 4.098 9 C -0.188 4.188 10 C 0.139 3.861 11 C -0.481 4.481 12 H 0.101 0.899 13 C -0.143 4.143 14 N -0.397 5.397 15 Si 0.734 3.266 16 H -0.192 1.192 17 H -0.196 1.196 18 H -0.180 1.180 19 C -0.155 4.155 20 C 0.246 3.754 21 O -0.324 6.324 22 H 0.132 0.868 23 H 0.118 0.882 24 H 0.145 0.855 25 H 0.099 0.901 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.521 0.215 -1.982 4.941 hybrid contribution 1.061 -0.422 0.322 1.186 sum -3.460 -0.206 -1.660 3.843 Atomic orbital electron populations 1.81247 1.11012 1.08043 1.08471 1.24473 0.91101 0.93795 0.93721 1.20375 0.88434 1.05439 1.08011 1.83621 0.94685 1.30579 1.44937 1.22824 0.96841 1.04764 1.09049 1.18361 0.89636 0.96292 0.98132 1.20476 0.90756 1.03977 1.07340 1.20655 0.95058 0.96775 0.97327 1.21191 0.99200 0.96306 1.02062 1.16971 0.86798 0.91386 0.90907 1.19544 1.01657 1.12300 1.14638 0.89904 1.25945 0.95747 0.96432 0.96136 1.69782 1.12109 1.33601 1.24198 0.86234 0.78768 0.79961 0.81642 1.19187 1.19649 1.18037 1.20172 0.93759 0.99519 1.02033 1.22192 0.94305 0.80943 0.77936 1.90503 1.63970 1.39945 1.38026 0.86751 0.88198 0.85526 0.90135 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.54 18.54 41.84 0.78 -5.77 15 2 C 0.28 4.38 14.84 -22.47 -0.33 4.05 15 3 C -0.10 -1.68 6.26 -38.11 -0.24 -1.92 15 4 S 0.19 3.40 22.66 -107.50 -2.44 0.97 15 5 C -0.22 -4.76 6.35 -37.58 -0.24 -5.00 15 6 C -0.02 -0.42 5.99 -105.22 -0.63 -1.05 15 7 C -0.20 -4.38 9.53 -38.61 -0.37 -4.74 15 8 C -0.08 -1.70 9.97 -39.87 -0.40 -2.10 15 9 C -0.16 -3.81 8.66 -38.93 -0.34 -4.15 15 10 C 0.15 3.44 5.59 -106.49 -0.60 2.84 15 11 C -0.45 -10.54 8.80 -37.91 -0.33 -10.88 15 12 H 0.08 1.84 7.71 -52.49 -0.40 1.44 15 13 C 0.08 1.74 5.12 -17.32 -0.09 1.65 15 14 N -0.77 -17.75 10.99 55.55 0.61 -17.14 15 15 Si 0.91 16.60 29.60 -169.99 -5.03 11.57 15 16 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 17 H -0.27 -4.86 7.11 56.52 0.40 -4.46 15 18 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 19 C -0.13 -2.36 5.86 -105.80 -0.62 -2.98 15 20 C 0.39 6.33 10.98 32.10 0.35 6.69 15 21 O -0.45 -8.54 15.43 5.47 0.08 -8.45 15 22 H 0.11 2.40 6.24 -52.49 -0.33 2.07 15 23 H 0.10 1.88 8.06 -52.49 -0.42 1.46 15 24 H 0.13 2.99 6.19 -52.49 -0.32 2.67 15 25 H 0.29 5.95 8.30 -40.82 -0.34 5.61 15 26 H 0.09 1.12 7.54 -52.49 -0.40 0.72 15 LS Contribution 260.53 15.07 3.93 3.93 Total: -1.00 -24.77 260.53 -6.91 -31.68 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -1.01 Total: 0.80 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -3.83 Total: -17.58 kcal Atomic # 7 Polarization: -24.29 SS G_CDS: 1.39 Total: -22.90 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.08 Total: -8.45 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.03 Total: 11.57 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -2.44 Total: 0.97 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -24.77 -6.91 -31.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396286864.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.187 kcal (2) G-P(sol) polarization free energy of solvation -24.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds