Wall clock time and date at job start Mon Mar 30 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 S 1.75208 * 124.57680 * 140.92342 * 3 2 1 5 5 C 1.75847 * 92.64421 * 180.02562 * 4 3 2 6 6 C 1.39239 * 110.59314 * 0.02562 * 5 4 3 7 7 C 1.41217 * 119.11250 * 179.97438 * 6 5 4 8 8 C 1.37811 * 120.99527 * 359.97438 * 7 6 5 9 9 C 1.37865 * 120.67755 * 359.82434 * 8 7 6 10 10 C 1.40327 * 119.86706 * 0.41010 * 9 8 7 11 11 C 1.40856 * 120.06725 * 179.82471 * 10 9 8 12 12 H 1.08002 * 119.99821 * 154.51681 * 11 10 9 13 13 C 1.40045 * 120.00267 * 334.52255 * 11 10 9 14 14 N 1.30791 * 119.99876 * 342.34788 * 13 11 10 15 15 Si 1.86802 * 119.99970 * 162.35620 * 13 11 10 16 16 H 1.48501 * 109.47312 * 94.64239 * 15 13 11 17 17 H 1.48503 * 109.46926 * 214.64199 * 15 13 11 18 18 H 1.48504 * 109.47181 * 334.63976 * 15 13 11 19 19 C 1.36994 * 124.57677 * 320.92614 * 3 2 1 20 20 C 1.41826 * 123.14240 * 0.03586 * 19 3 2 21 21 O 1.21386 * 120.00179 * 179.97438 * 20 19 3 22 22 H 1.07996 * 119.50001 * 180.02562 * 7 6 5 23 23 H 1.07997 * 119.66572 * 179.97438 * 8 7 6 24 24 H 1.07996 * 120.06636 * 180.21450 * 9 8 7 25 25 H 0.97005 * 120.00055 * 179.97438 * 14 13 11 26 26 H 1.07998 * 119.99996 * 359.96409 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5618 1.1210 -0.9094 5 6 5.0545 0.3991 -0.3237 6 6 4.7812 -0.6613 0.5363 7 6 5.8561 -1.3729 1.1128 8 6 7.1624 -1.0326 0.8357 9 6 7.4515 0.0118 -0.0166 10 6 6.4083 0.7441 -0.6036 11 6 6.6989 1.8143 -1.4721 12 1 5.9822 2.1090 -2.2244 13 6 7.9170 2.4961 -1.3601 14 7 8.6276 2.3902 -0.2672 15 14 8.5267 3.5570 -2.7715 16 1 8.1148 4.9658 -2.5458 17 1 10.0080 3.4800 -2.8446 18 1 7.9422 3.0686 -4.0463 19 6 3.3458 -0.8747 0.7110 20 6 2.8085 -1.8942 1.5376 21 8 3.5515 -2.6396 2.1425 22 1 5.6513 -2.1968 1.7803 23 1 7.9680 -1.5911 1.2888 24 1 8.4789 0.2679 -0.2296 25 1 9.4716 2.8621 -0.1897 26 1 1.7384 -2.0073 1.6290 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396286864.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:00 Heat of formation + Delta-G solvation = 18.293373 kcal Electronic energy + Delta-G solvation = -15365.192889 eV Core-core repulsion = 12692.759639 eV Total energy + Delta-G solvation = -2672.433250 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.83266 -39.15585 -38.12287 -36.35271 -34.95985 -31.89763 -30.58743 -27.70560 -26.81235 -24.06077 -23.10045 -21.40883 -19.40255 -19.00602 -18.14381 -17.19758 -16.96147 -16.06888 -15.82698 -15.56057 -15.23412 -14.96708 -14.78162 -14.53040 -14.10788 -13.93679 -13.74604 -13.26882 -13.00552 -12.75556 -12.52364 -12.09448 -11.98828 -11.71591 -11.26352 -11.10548 -10.71576 -10.18936 -9.27548 -8.81495 -8.64148 -6.39769 -1.08259 0.15640 0.66343 0.89680 1.09560 1.41809 1.47313 1.55478 1.61216 1.63121 2.17684 2.24780 2.53993 2.70390 3.37840 3.53405 4.12170 4.15689 4.52222 4.62599 4.70767 4.94122 5.16475 5.22363 5.40366 5.72638 5.84996 6.07587 6.09191 6.12819 6.44137 6.53097 6.73689 6.82293 8.21068 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.025710 B = 0.007216 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.829268 B = 3879.330964 C = 4887.296958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C 0.298 3.702 3 C -0.071 4.071 4 S 0.225 5.775 5 C -0.247 4.247 6 C -0.032 4.032 7 C -0.215 4.215 8 C -0.082 4.082 9 C -0.191 4.191 10 C 0.122 3.878 11 C -0.479 4.479 12 H 0.086 0.914 13 C 0.043 3.957 14 N -0.804 5.804 15 Si 0.978 3.022 16 H -0.262 1.262 17 H -0.266 1.266 18 H -0.255 1.255 19 C -0.144 4.144 20 C 0.397 3.603 21 O -0.479 6.479 22 H 0.118 0.882 23 H 0.119 0.881 24 H 0.114 0.886 25 H 0.295 0.705 26 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.729 -0.390 -1.920 5.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.081 5.081 2 C -0.018 4.018 3 C -0.193 4.193 4 S 0.497 5.503 5 C -0.364 4.364 6 C -0.037 4.037 7 C -0.237 4.237 8 C -0.101 4.101 9 C -0.215 4.215 10 C 0.116 3.884 11 C -0.507 4.507 12 H 0.104 0.896 13 C -0.176 4.176 14 N -0.428 5.428 15 Si 0.798 3.202 16 H -0.186 1.186 17 H -0.190 1.190 18 H -0.179 1.179 19 C -0.167 4.167 20 C 0.257 3.743 21 O -0.355 6.355 22 H 0.136 0.864 23 H 0.137 0.863 24 H 0.132 0.868 25 H 0.106 0.894 26 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.227 0.591 -2.515 6.741 hybrid contribution 1.445 -0.555 0.517 1.632 sum -4.782 0.037 -1.997 5.182 Atomic orbital electron populations 1.81299 1.10825 1.07802 1.08149 1.23983 0.90304 0.93779 0.93710 1.20302 0.88873 1.03944 1.06193 1.83449 0.92452 1.30017 1.44433 1.23079 0.97905 1.05646 1.09738 1.18718 0.91325 0.95935 0.97679 1.20627 0.91036 1.04333 1.07677 1.20866 0.95927 0.96423 0.96864 1.21162 0.98780 0.97684 1.03839 1.17282 0.87944 0.91808 0.91322 1.19788 1.02805 1.12933 1.15214 0.89577 1.26730 0.95405 0.97315 0.98116 1.69828 1.12680 1.34529 1.25766 0.85234 0.78321 0.78225 0.78406 1.18638 1.19035 1.17883 1.20269 0.92357 1.00858 1.03260 1.22684 0.95848 0.79423 0.76376 1.90505 1.65043 1.40863 1.39113 0.86399 0.86274 0.86820 0.89431 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -11.37 18.54 19.00 0.35 -11.02 15 2 C 0.30 8.12 14.84 88.33 1.31 9.43 15 3 C -0.07 -2.18 6.26 23.22 0.15 -2.04 15 4 S 0.23 7.72 22.66 -56.49 -1.28 6.44 15 5 C -0.25 -10.82 6.35 23.57 0.15 -10.67 15 6 C -0.03 -1.33 5.99 -20.25 -0.12 -1.45 15 7 C -0.21 -9.35 9.53 22.90 0.22 -9.13 15 8 C -0.08 -3.61 9.97 22.08 0.22 -3.39 15 9 C -0.19 -9.24 8.66 22.69 0.20 -9.04 15 10 C 0.12 5.92 5.59 -21.07 -0.12 5.80 15 11 C -0.48 -22.69 8.80 23.35 0.21 -22.49 15 12 H 0.09 3.86 7.71 -2.91 -0.02 3.83 15 13 C 0.04 1.92 5.12 85.29 0.44 2.35 15 14 N -0.80 -37.73 10.99 21.84 0.24 -37.49 15 15 Si 0.98 33.85 29.60 68.60 2.03 35.88 15 16 H -0.26 -8.78 7.11 99.48 0.71 -8.08 15 17 H -0.27 -8.87 7.11 99.48 0.71 -8.16 15 18 H -0.26 -8.68 7.11 99.48 0.71 -7.98 15 19 C -0.14 -4.92 5.86 -20.63 -0.12 -5.04 15 20 C 0.40 11.95 10.98 68.71 0.75 12.70 15 21 O -0.48 -17.49 15.43 -3.36 -0.05 -17.55 15 22 H 0.12 4.97 6.24 -2.91 -0.02 4.96 15 23 H 0.12 4.59 8.06 -2.91 -0.02 4.56 15 24 H 0.11 5.66 6.19 -2.91 -0.02 5.64 15 25 H 0.29 12.41 8.30 -92.70 -0.77 11.64 15 26 H 0.13 2.85 7.54 -2.91 -0.02 2.82 15 Total: -1.00 -53.26 260.53 5.82 -47.45 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.25 Total: 9.24 kcal Atomic # 6 Polarization: -36.23 SS G_CDS: 3.28 Total: -32.95 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.59 Total: -48.50 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.05 Total: -17.55 kcal Atomic # 14 Polarization: 33.85 SS G_CDS: 2.03 Total: 35.88 kcal Atomic # 16 Polarization: 7.72 SS G_CDS: -1.28 Total: 6.44 kcal Total: -53.26 5.82 -47.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396286864.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.741 kcal (2) G-P(sol) polarization free energy of solvation -53.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds