Wall clock time and date at job start Mon Mar 30 2020 06:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 S 1.75205 * 124.55038 * 150.48502 * 3 2 1 5 5 C 1.75898 * 92.64038 * 179.97438 * 4 3 2 6 6 C 1.39284 * 129.68759 * 179.44015 * 5 4 3 7 7 C 1.40224 * 120.09918 * 180.02562 * 6 5 4 8 8 C 1.40973 * 120.18529 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00009 * 204.78160 * 8 7 6 10 10 C 1.40021 * 120.00003 * 24.77318 * 8 7 6 11 11 N 1.30786 * 119.99912 * 17.95740 * 10 8 7 12 12 Si 1.86810 * 119.99900 * 197.95922 * 10 8 7 13 13 H 1.48491 * 109.47148 * 90.00088 * 12 10 8 14 14 H 1.48498 * 109.46559 * 209.99956 * 12 10 8 15 15 H 1.48501 * 109.46903 * 329.99972 * 12 10 8 16 16 C 1.41292 * 119.62956 * 0.02562 * 7 6 5 17 17 C 1.35259 * 120.22099 * 359.97438 * 16 7 6 18 18 C 1.40036 * 110.51431 * 359.68435 * 5 4 3 19 19 C 1.37351 * 124.55356 * 329.90296 * 3 2 1 20 20 C 1.46236 * 123.10143 * 0.02562 * 19 3 2 21 21 O 1.21373 * 119.99788 * 0.03571 * 20 19 3 22 22 H 1.07997 * 119.95122 * 359.97438 * 6 5 4 23 23 H 0.97006 * 120.00118 * 180.02562 * 11 10 8 24 24 H 1.08000 * 119.88749 * 179.97438 * 16 7 6 25 25 H 1.07999 * 119.55041 * 179.97438 * 17 16 7 26 26 H 1.08001 * 120.00650 * 180.02562 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5611 1.2569 -0.7109 5 6 5.0546 0.4488 -0.2522 6 6 6.3760 0.8270 -0.4776 7 6 7.4266 0.0201 -0.0178 8 6 8.7647 0.4009 -0.2454 9 1 9.5425 -0.3480 -0.2702 10 6 9.0854 1.7500 -0.4394 11 7 8.2443 2.6815 -0.0715 12 14 10.7146 2.2194 -1.2238 13 1 10.5485 2.3038 -2.6969 14 1 11.1551 3.5368 -0.6989 15 1 11.7350 1.1906 -0.8988 16 6 7.1366 -1.1773 0.6739 17 6 5.8530 -1.5436 0.8923 18 6 4.7784 -0.7422 0.4306 19 6 3.3474 -0.9777 0.5673 20 6 2.7920 -2.1484 1.2451 21 8 1.5891 -2.2894 1.3251 22 1 6.5918 1.7427 -1.0080 23 1 8.4662 3.6162 -0.2063 24 1 7.9425 -1.8021 1.0295 25 1 5.6437 -2.4613 1.4218 26 1 3.4520 -2.8878 1.6743 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396287044.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:29 Heat of formation + Delta-G solvation = 23.589682 kcal Electronic energy + Delta-G solvation = -15199.525947 eV Core-core repulsion = 12527.322362 eV Total energy + Delta-G solvation = -2672.203585 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.21523 -37.95470 -36.15880 -34.91824 -33.14620 -29.91921 -29.53866 -26.43936 -25.12205 -22.37837 -21.33263 -19.76544 -18.30055 -17.77902 -16.19026 -15.72322 -15.40337 -14.47796 -14.42047 -14.25191 -13.72848 -13.31831 -13.17135 -12.89499 -12.57429 -12.34416 -12.20685 -11.81503 -11.47732 -11.30378 -11.08100 -10.88075 -10.31403 -10.20730 -9.76928 -9.48818 -9.42646 -8.80999 -7.74834 -7.28460 -7.08323 -4.78035 0.56647 1.84504 2.13155 2.53602 2.60780 2.76081 2.83649 2.86188 3.13026 3.41249 3.56740 3.82112 4.18537 4.41935 4.72378 5.13322 5.44180 5.64377 5.93615 6.11341 6.32726 6.50158 6.59584 6.78297 6.87722 7.22280 7.34335 7.48610 7.64195 7.66941 7.93724 8.04372 8.30050 8.36782 9.62711 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.037889 B = 0.005727 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.814946 B = 4888.095202 C = 5546.542591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.296 3.704 3 C -0.146 4.146 4 S 0.112 5.888 5 C -0.075 4.075 6 C -0.161 4.161 7 C 0.122 3.878 8 C -0.417 4.417 9 H 0.092 0.908 10 C 0.069 3.931 11 N -0.758 5.758 12 Si 0.917 3.083 13 H -0.262 1.262 14 H -0.273 1.273 15 H -0.257 1.257 16 C -0.179 4.179 17 C -0.053 4.053 18 C -0.185 4.185 19 C -0.082 4.082 20 C 0.391 3.609 21 O -0.463 6.463 22 H 0.127 0.873 23 H 0.292 0.708 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.192 -2.222 -0.395 3.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.019 4.019 3 C -0.265 4.265 4 S 0.378 5.622 5 C -0.191 4.191 6 C -0.188 4.188 7 C 0.115 3.885 8 C -0.445 4.445 9 H 0.110 0.890 10 C -0.155 4.155 11 N -0.380 5.380 12 Si 0.740 3.260 13 H -0.187 1.187 14 H -0.198 1.198 15 H -0.181 1.181 16 C -0.198 4.198 17 C -0.074 4.074 18 C -0.189 4.189 19 C -0.101 4.101 20 C 0.248 3.752 21 O -0.337 6.337 22 H 0.145 0.855 23 H 0.103 0.897 24 H 0.128 0.872 25 H 0.122 0.878 26 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.330 -0.668 -1.089 1.319 hybrid contribution 1.618 -0.817 0.447 1.866 sum 1.947 -1.485 -0.642 2.531 Atomic orbital electron populations 1.81107 1.11396 1.08581 1.09701 1.24288 0.91062 0.93223 0.93281 1.19646 0.88360 1.03860 1.14669 1.83679 0.95125 1.22418 1.60952 1.22340 0.96740 0.97239 1.02732 1.20625 0.87466 1.03520 1.07166 1.17507 0.93101 0.90278 0.87572 1.19881 0.93843 0.92994 1.37813 0.88996 1.26152 0.99866 0.96350 0.93084 1.69778 1.35893 1.02610 1.29694 0.86125 0.80595 0.78978 0.80261 1.18700 1.19805 1.18082 1.20816 0.95153 0.99861 1.03973 1.20165 0.91632 0.97167 0.98425 1.18188 0.89685 0.98807 1.12232 1.20986 0.92997 0.96121 1.00033 1.23615 0.89894 0.86070 0.75576 1.90558 1.19065 1.75446 1.48660 0.85539 0.89674 0.87245 0.87768 0.87514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.95 18.54 41.84 0.78 -8.17 15 2 C 0.30 5.90 13.77 -22.47 -0.31 5.59 15 3 C -0.15 -2.78 6.27 -37.98 -0.24 -3.02 15 4 S 0.11 2.07 23.14 -107.50 -2.49 -0.42 15 5 C -0.07 -1.55 6.41 -38.52 -0.25 -1.79 15 6 C -0.16 -3.54 8.73 -38.45 -0.34 -3.87 15 7 C 0.12 2.65 5.56 -106.95 -0.59 2.05 15 8 C -0.42 -8.88 9.03 -37.88 -0.34 -9.23 15 9 H 0.09 1.82 7.91 -52.49 -0.42 1.41 15 10 C 0.07 1.41 5.13 -17.33 -0.09 1.32 15 11 N -0.76 -16.37 10.97 55.55 0.61 -15.76 15 12 Si 0.92 15.34 29.60 -169.99 -5.03 10.31 15 13 H -0.26 -4.41 7.11 56.52 0.40 -4.01 15 14 H -0.27 -4.55 7.11 56.52 0.40 -4.15 15 15 H -0.26 -4.24 7.11 56.52 0.40 -3.83 15 16 C -0.18 -3.41 9.69 -39.48 -0.38 -3.80 15 17 C -0.05 -0.94 9.75 -39.29 -0.38 -1.32 15 18 C -0.18 -3.54 6.03 -104.91 -0.63 -4.17 15 19 C -0.08 -1.49 6.01 -104.04 -0.63 -2.12 15 20 C 0.39 6.27 11.39 33.94 0.39 6.66 15 21 O -0.46 -8.89 15.90 5.48 0.09 -8.80 15 22 H 0.13 2.90 6.15 -52.49 -0.32 2.58 15 23 H 0.29 5.69 8.30 -40.82 -0.34 5.35 15 24 H 0.11 1.85 8.06 -52.49 -0.42 1.43 15 25 H 0.10 1.45 7.50 -52.49 -0.39 1.05 15 26 H 0.11 1.26 7.49 -52.49 -0.39 0.87 15 LS Contribution 262.62 15.07 3.96 3.96 Total: -1.00 -24.92 262.62 -6.96 -31.88 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -1.08 Total: 0.69 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -3.79 Total: -13.69 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 1.38 Total: -23.93 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 15.34 SS G_CDS: -5.03 Total: 10.31 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.49 Total: -0.42 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -24.92 -6.96 -31.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396287044.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.475 kcal (2) G-P(sol) polarization free energy of solvation -24.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds