Wall clock time and date at job start Mon Mar 30 2020 06:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 S 1.75205 * 124.55038 * 150.48502 * 3 2 1 5 5 C 1.75898 * 92.64038 * 179.97438 * 4 3 2 6 6 C 1.39284 * 129.68759 * 179.44015 * 5 4 3 7 7 C 1.40224 * 120.09918 * 180.02562 * 6 5 4 8 8 C 1.40973 * 120.18529 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00009 * 204.78160 * 8 7 6 10 10 C 1.40021 * 120.00003 * 24.77318 * 8 7 6 11 11 N 1.30786 * 119.99912 * 17.95740 * 10 8 7 12 12 Si 1.86810 * 119.99900 * 197.95922 * 10 8 7 13 13 H 1.48491 * 109.47148 * 90.00088 * 12 10 8 14 14 H 1.48498 * 109.46559 * 209.99956 * 12 10 8 15 15 H 1.48501 * 109.46903 * 329.99972 * 12 10 8 16 16 C 1.41292 * 119.62956 * 0.02562 * 7 6 5 17 17 C 1.35259 * 120.22099 * 359.97438 * 16 7 6 18 18 C 1.40036 * 110.51431 * 359.68435 * 5 4 3 19 19 C 1.37351 * 124.55356 * 329.90296 * 3 2 1 20 20 C 1.46236 * 123.10143 * 0.02562 * 19 3 2 21 21 O 1.21373 * 119.99788 * 0.03571 * 20 19 3 22 22 H 1.07997 * 119.95122 * 359.97438 * 6 5 4 23 23 H 0.97006 * 120.00118 * 180.02562 * 11 10 8 24 24 H 1.08000 * 119.88749 * 179.97438 * 16 7 6 25 25 H 1.07999 * 119.55041 * 179.97438 * 17 16 7 26 26 H 1.08001 * 120.00650 * 180.02562 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5611 1.2569 -0.7109 5 6 5.0546 0.4488 -0.2522 6 6 6.3760 0.8270 -0.4776 7 6 7.4266 0.0201 -0.0178 8 6 8.7647 0.4009 -0.2454 9 1 9.5425 -0.3480 -0.2702 10 6 9.0854 1.7500 -0.4394 11 7 8.2443 2.6815 -0.0715 12 14 10.7146 2.2194 -1.2238 13 1 10.5485 2.3038 -2.6969 14 1 11.1551 3.5368 -0.6989 15 1 11.7350 1.1906 -0.8988 16 6 7.1366 -1.1773 0.6739 17 6 5.8530 -1.5436 0.8923 18 6 4.7784 -0.7422 0.4306 19 6 3.3474 -0.9777 0.5673 20 6 2.7920 -2.1484 1.2451 21 8 1.5891 -2.2894 1.3251 22 1 6.5918 1.7427 -1.0080 23 1 8.4662 3.6162 -0.2063 24 1 7.9425 -1.8021 1.0295 25 1 5.6437 -2.4613 1.4218 26 1 3.4520 -2.8878 1.6743 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396287044.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:29 Heat of formation + Delta-G solvation = 12.054972 kcal Electronic energy + Delta-G solvation = -15200.026130 eV Core-core repulsion = 12527.322362 eV Total energy + Delta-G solvation = -2672.703768 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.63681 -39.42350 -37.73855 -36.44379 -34.65602 -31.42625 -31.07400 -27.94048 -26.58375 -23.88530 -22.82046 -21.21410 -19.77269 -19.30371 -17.63364 -17.21437 -16.84392 -15.90769 -15.85266 -15.70423 -15.25998 -14.78944 -14.69283 -14.35096 -14.10417 -13.88738 -13.76256 -13.29898 -12.92814 -12.75070 -12.52559 -12.31960 -11.76595 -11.69178 -11.26072 -10.97790 -10.80478 -10.32612 -9.30650 -8.79996 -8.57945 -6.38303 -0.88623 0.32187 0.66948 1.03058 1.08060 1.42271 1.46478 1.57505 1.68948 1.85633 2.17292 2.29365 2.68713 2.89473 3.45073 3.58081 4.11156 4.22336 4.54543 4.75483 4.89391 4.97772 5.10424 5.24620 5.35089 5.72613 5.80300 5.98616 6.11657 6.34633 6.38473 6.49307 6.74000 6.83044 8.13766 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.037889 B = 0.005727 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.814946 B = 4888.095202 C = 5546.542591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.305 3.695 3 C -0.162 4.162 4 S 0.125 5.875 5 C -0.092 4.092 6 C -0.188 4.188 7 C 0.100 3.900 8 C -0.446 4.446 9 H 0.101 0.899 10 C 0.034 3.966 11 N -0.794 5.794 12 Si 0.982 3.018 13 H -0.265 1.265 14 H -0.272 1.272 15 H -0.249 1.249 16 C -0.189 4.189 17 C -0.043 4.043 18 C -0.187 4.187 19 C -0.075 4.075 20 C 0.401 3.599 21 O -0.494 6.494 22 H 0.106 0.894 23 H 0.296 0.704 24 H 0.132 0.868 25 H 0.154 0.846 26 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.854 -3.898 0.277 5.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.009 4.009 3 C -0.281 4.281 4 S 0.392 5.608 5 C -0.208 4.208 6 C -0.215 4.215 7 C 0.094 3.906 8 C -0.474 4.474 9 H 0.119 0.881 10 C -0.185 4.185 11 N -0.417 5.417 12 Si 0.803 3.197 13 H -0.189 1.189 14 H -0.197 1.197 15 H -0.172 1.172 16 C -0.208 4.208 17 C -0.063 4.063 18 C -0.191 4.191 19 C -0.095 4.095 20 C 0.260 3.740 21 O -0.370 6.370 22 H 0.124 0.876 23 H 0.107 0.893 24 H 0.150 0.850 25 H 0.171 0.829 26 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.991 -2.350 -0.414 2.584 hybrid contribution 1.314 -0.329 0.257 1.378 sum 2.304 -2.679 -0.157 3.537 Atomic orbital electron populations 1.81106 1.11940 1.09282 1.10498 1.24375 0.91169 0.92665 0.92718 1.19805 0.88082 1.04632 1.15612 1.83613 0.94286 1.22226 1.60722 1.22594 0.96881 0.98276 1.03058 1.20518 0.88521 1.03645 1.08863 1.17881 0.93286 0.91514 0.87964 1.20181 0.94220 0.93779 1.39207 0.88111 1.26912 1.02714 0.96074 0.92845 1.69836 1.37698 1.03072 1.31068 0.85156 0.76940 0.78679 0.78926 1.18930 1.19672 1.17233 1.21093 0.96705 0.99254 1.03727 1.20612 0.90345 0.98168 0.97152 1.18469 0.90594 0.98379 1.11686 1.21335 0.92367 0.96639 0.99139 1.24324 0.89862 0.85635 0.74178 1.90572 1.20813 1.75845 1.49720 0.87625 0.89294 0.85036 0.82862 0.81581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -18.41 18.54 19.00 0.35 -18.05 15 2 C 0.30 11.87 13.77 88.33 1.22 13.08 15 3 C -0.16 -5.97 6.27 23.31 0.15 -5.83 15 4 S 0.12 4.61 23.14 -56.49 -1.31 3.31 15 5 C -0.09 -3.79 6.41 22.96 0.15 -3.64 15 6 C -0.19 -8.46 8.73 23.00 0.20 -8.26 15 7 C 0.10 4.34 5.56 -21.38 -0.12 4.22 15 8 C -0.45 -19.08 9.03 23.37 0.21 -18.87 15 9 H 0.10 3.95 7.91 -2.91 -0.02 3.93 15 10 C 0.03 1.43 5.13 85.28 0.44 1.86 15 11 N -0.79 -35.31 10.97 21.84 0.24 -35.07 15 12 Si 0.98 31.39 29.60 68.60 2.03 33.42 15 13 H -0.26 -8.45 7.11 99.48 0.71 -7.74 15 14 H -0.27 -8.53 7.11 99.48 0.71 -7.82 15 15 H -0.25 -7.55 7.11 99.48 0.71 -6.84 15 16 C -0.19 -6.80 9.69 22.33 0.22 -6.58 15 17 C -0.04 -1.35 9.75 22.46 0.22 -1.13 15 18 C -0.19 -6.73 6.03 -20.05 -0.12 -6.85 15 19 C -0.08 -2.53 6.01 -19.49 -0.12 -2.65 15 20 C 0.40 11.25 11.39 69.90 0.80 12.05 15 21 O -0.49 -17.58 15.90 -3.32 -0.05 -17.63 15 22 H 0.11 5.09 6.15 -2.91 -0.02 5.08 15 23 H 0.30 11.93 8.30 -92.70 -0.77 11.16 15 24 H 0.13 4.06 8.06 -2.91 -0.02 4.04 15 25 H 0.15 3.29 7.50 -2.91 -0.02 3.26 15 26 H 0.17 2.81 7.49 -2.91 -0.02 2.79 15 Total: -1.00 -54.51 262.62 5.74 -48.77 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.24 Total: 7.85 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 3.23 Total: -22.59 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.59 Total: -53.12 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.05 Total: -17.63 kcal Atomic # 14 Polarization: 31.39 SS G_CDS: 2.03 Total: 33.42 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.31 Total: 3.31 kcal Total: -54.51 5.74 -48.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396287044.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.825 kcal (2) G-P(sol) polarization free energy of solvation -54.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds