Wall clock time and date at job start Mon Mar 30 2020 06:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39451 * 119.60046 * 231.85844 * 3 2 1 5 5 C 1.39530 * 121.36851 * 179.97438 * 4 3 2 6 6 S 1.75867 * 130.16540 * 180.28561 * 5 4 3 7 7 C 1.70016 * 93.09174 * 180.08478 * 6 5 4 8 8 C 1.36052 * 111.90346 * 359.64782 * 7 6 5 9 9 C 1.46195 * 123.17592 * 180.24453 * 8 7 6 10 10 O 1.21379 * 120.00194 * 5.74329 * 9 8 7 11 11 C 1.39370 * 119.85858 * 0.02562 * 5 4 3 12 12 C 1.47410 * 118.86600 * 359.97438 * 11 5 4 13 13 C 1.40845 * 120.33766 * 180.02562 * 12 11 5 14 14 H 1.08001 * 120.00001 * 39.75526 * 13 12 11 15 15 C 1.39977 * 120.00063 * 219.75845 * 13 12 11 16 16 N 1.30837 * 120.00036 * 10.65791 * 15 13 12 17 17 Si 1.86795 * 120.00134 * 190.65940 * 15 13 12 18 18 H 1.48495 * 109.47295 * 59.99914 * 17 15 13 19 19 H 1.48496 * 109.47373 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46971 * 299.99856 * 17 15 13 21 21 C 1.39118 * 119.60119 * 51.87875 * 3 2 1 22 22 H 1.07998 * 119.31352 * 0.02562 * 4 3 2 23 23 H 1.08002 * 124.04695 * 179.97438 * 7 6 5 24 24 H 1.07997 * 119.99624 * 185.73995 * 9 8 7 25 25 H 0.96996 * 119.99971 * 180.02562 * 16 15 13 26 26 H 1.08006 * 120.10381 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2564 0.7498 0.9536 5 6 4.6511 0.7766 0.9878 6 16 5.7430 1.6230 2.0760 7 6 7.1308 1.0221 1.2990 8 6 6.8158 0.2042 0.2585 9 6 7.8210 -0.4511 -0.5766 10 8 8.9978 -0.3612 -0.2932 11 6 5.3822 0.0440 0.0545 12 6 4.6565 -0.7487 -0.9545 13 6 5.3644 -1.5009 -1.9120 14 1 6.2574 -2.0365 -1.6254 15 6 4.9105 -1.5544 -3.2350 16 7 3.9596 -0.7490 -3.6335 17 14 5.6624 -2.7758 -4.4317 18 1 5.4555 -4.1564 -3.9254 19 1 5.0117 -2.6332 -5.7589 20 1 7.1175 -2.5093 -4.5622 21 6 3.2555 -0.7458 -0.9516 22 1 2.6986 1.3204 1.6813 23 1 8.1413 1.2572 1.5991 24 1 7.5164 -1.0153 -1.4457 25 1 3.6448 -0.7863 -4.5502 26 1 2.7109 -1.3214 -1.6855 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396287123.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:39 Heat of formation + Delta-G solvation = 24.847726 kcal Electronic energy + Delta-G solvation = -15512.370535 eV Core-core repulsion = 12840.221503 eV Total energy + Delta-G solvation = -2672.149032 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.95404 -37.85626 -35.98982 -34.48158 -33.60402 -30.32332 -29.01545 -25.91319 -25.14038 -22.61075 -21.52557 -19.45560 -18.64512 -16.98596 -16.47228 -15.44462 -15.25634 -15.02596 -14.08680 -13.82635 -13.76679 -13.30879 -13.24310 -12.96224 -12.32851 -12.11849 -11.99295 -11.79227 -11.75666 -11.41700 -11.08102 -10.84525 -10.50009 -10.15751 -9.90868 -9.59752 -9.10679 -8.50341 -7.77596 -7.21672 -7.07135 -4.82662 1.01294 1.93090 2.11055 2.27810 2.57253 2.85723 2.89698 2.91325 3.31139 3.32368 3.64401 3.86035 4.29473 4.69633 5.00121 5.20945 5.39642 5.76039 6.02713 6.07675 6.33819 6.42694 6.53158 6.68575 6.76196 7.09111 7.21044 7.35347 7.47180 7.89899 8.03683 8.13926 8.24953 8.31995 9.76676 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.011150 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.050252 B = 2510.607166 C = 4455.494380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.279 3.721 3 C 0.014 3.986 4 C -0.164 4.164 5 C -0.110 4.110 6 S 0.117 5.883 7 C -0.210 4.210 8 C -0.152 4.152 9 C 0.393 3.607 10 O -0.491 6.491 11 C -0.121 4.121 12 C 0.157 3.843 13 C -0.453 4.453 14 H 0.095 0.905 15 C 0.075 3.925 16 N -0.777 5.777 17 Si 0.912 3.088 18 H -0.258 1.258 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.123 4.123 22 H 0.107 0.893 23 H 0.161 0.839 24 H 0.127 0.873 25 H 0.292 0.708 26 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.299 0.365 2.749 4.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.035 4.035 3 C 0.007 3.993 4 C -0.191 4.191 5 C -0.224 4.224 6 S 0.384 5.616 7 C -0.347 4.347 8 C -0.167 4.167 9 C 0.253 3.747 10 O -0.368 6.368 11 C -0.127 4.127 12 C 0.151 3.849 13 C -0.481 4.481 14 H 0.113 0.887 15 C -0.146 4.146 16 N -0.400 5.400 17 Si 0.735 3.265 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.147 4.147 22 H 0.125 0.875 23 H 0.179 0.821 24 H 0.143 0.857 25 H 0.103 0.897 26 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.871 1.475 3.938 4.603 hybrid contribution 0.813 -1.230 -1.826 2.347 sum 2.684 0.245 2.112 3.424 Atomic orbital electron populations 1.81098 1.12514 1.10146 1.09992 1.26142 0.93072 0.92251 0.92028 1.15622 0.82876 1.01664 0.99092 1.19411 0.90332 1.06962 1.02416 1.22048 0.96929 1.03185 1.00278 1.82441 0.94343 1.50810 1.34046 1.25165 1.03543 1.04767 1.01208 1.20761 0.94443 1.02674 0.98867 1.24322 0.86316 0.76798 0.87296 1.90444 1.21246 1.53981 1.71117 1.20201 0.89826 1.01627 1.01057 1.18063 0.90468 0.87954 0.88372 1.19584 1.10210 1.25453 0.92842 0.88712 1.25963 0.94191 0.94978 0.99484 1.69716 1.21428 1.29247 1.19600 0.86246 0.80427 0.81043 0.78747 1.18259 1.19880 1.18302 1.21022 0.93665 1.01765 0.98285 0.87506 0.82101 0.85714 0.89728 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.43 18.54 41.84 0.78 -8.65 15 2 C 0.28 5.50 15.27 -22.47 -0.34 5.16 15 3 C 0.01 0.27 5.71 -107.19 -0.61 -0.34 15 4 C -0.16 -3.10 9.70 -38.65 -0.37 -3.47 15 5 C -0.11 -2.12 6.43 -38.68 -0.25 -2.36 15 6 S 0.12 1.88 22.97 -107.50 -2.47 -0.59 15 7 C -0.21 -3.65 10.42 29.95 0.31 -3.34 15 8 C -0.15 -2.94 5.97 -104.52 -0.62 -3.56 15 9 C 0.39 7.41 10.89 33.92 0.37 7.78 15 10 O -0.49 -9.97 17.51 5.47 0.10 -9.87 15 11 C -0.12 -2.49 6.20 -102.77 -0.64 -3.13 15 12 C 0.16 3.38 5.56 -104.48 -0.58 2.80 15 13 C -0.45 -9.49 7.47 -37.95 -0.28 -9.77 15 14 H 0.10 1.84 5.75 -52.49 -0.30 1.53 15 15 C 0.08 1.55 5.20 -17.32 -0.09 1.46 15 16 N -0.78 -16.93 11.64 55.55 0.65 -16.29 15 17 Si 0.91 15.64 29.57 -169.99 -5.03 10.61 15 18 H -0.26 -4.42 7.11 56.52 0.40 -4.02 15 19 H -0.27 -4.70 7.11 56.52 0.40 -4.30 15 20 H -0.26 -4.40 7.11 56.52 0.40 -4.00 15 21 C -0.12 -2.62 8.29 -38.55 -0.32 -2.94 15 22 H 0.11 1.80 8.06 -52.49 -0.42 1.38 15 23 H 0.16 2.54 7.98 -52.49 -0.42 2.12 15 24 H 0.13 2.24 4.82 -52.49 -0.25 1.99 15 25 H 0.29 5.85 8.30 -40.82 -0.34 5.52 15 26 H 0.13 2.74 7.07 -52.48 -0.37 2.37 15 LS Contribution 260.65 15.07 3.93 3.93 Total: -1.00 -23.61 260.65 -6.39 -29.99 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -0.90 Total: 2.59 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -3.43 Total: -11.73 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 1.42 Total: -24.94 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.10 Total: -9.87 kcal Atomic # 14 Polarization: 15.64 SS G_CDS: -5.03 Total: 10.61 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.47 Total: -0.59 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -23.61 -6.39 -29.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396287123.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.843 kcal (2) G-P(sol) polarization free energy of solvation -23.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds