Wall clock time and date at job start Mon Mar 30 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 C 1.39295 * 119.78495 * 98.52895 * 3 2 1 5 5 C 1.36175 * 121.46676 * 179.97438 * 4 3 2 6 6 C 1.40620 * 120.80485 * 0.02562 * 5 4 3 7 7 C 1.40406 * 120.03154 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00127 * 205.34527 * 7 6 5 9 9 C 1.40316 * 119.99894 * 25.62669 * 7 6 5 10 10 N 1.30628 * 120.00065 * 17.54055 * 9 7 6 11 11 Si 1.86802 * 119.99928 * 197.54234 * 9 7 6 12 12 H 1.48498 * 109.46994 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47058 * 119.99528 * 11 9 7 14 14 H 1.48498 * 109.47217 * 239.99608 * 11 9 7 15 15 C 1.46719 * 119.93872 * 0.25388 * 6 5 4 16 16 S 1.75882 * 130.85777 * 180.37467 * 15 6 5 17 17 C 1.75520 * 91.63677 * 179.50676 * 16 15 6 18 18 C 1.41799 * 124.81699 * 179.82508 * 17 16 15 19 19 O 1.21383 * 120.00136 * 179.97438 * 18 17 16 20 20 C 1.35449 * 110.36498 * 359.78648 * 17 16 15 21 21 C 1.39734 * 119.28897 * 359.43951 * 15 6 5 22 22 H 1.07998 * 119.26542 * 359.95751 * 4 3 2 23 23 H 1.08005 * 119.59944 * 179.97438 * 5 4 3 24 24 H 0.96999 * 119.99667 * 180.02562 * 10 9 7 25 25 H 1.08007 * 120.00356 * 359.95423 * 18 17 16 26 26 H 1.08000 * 122.33814 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2598 0.1802 -1.1956 5 6 4.6209 0.1873 -1.2350 6 6 5.3763 0.0117 -0.0620 7 6 6.7791 0.0213 -0.1215 8 1 7.3550 -0.4962 0.6315 9 6 7.4327 0.7081 -1.1558 10 7 6.7889 1.6064 -1.8522 11 14 9.2236 0.3380 -1.5368 12 1 9.7201 -0.7112 -0.6106 13 1 9.3429 -0.1409 -2.9374 14 1 10.0316 1.5720 -1.3650 15 6 4.6972 -0.1876 1.2232 16 16 5.3438 -0.4228 2.8419 17 6 3.7306 -0.5267 3.5257 18 6 3.4452 -0.7320 4.8994 19 8 2.2934 -0.7893 5.2781 20 6 2.7970 -0.3821 2.5550 21 6 3.3005 -0.1884 1.2655 22 1 2.7043 0.3167 -2.1116 23 1 5.1266 0.3286 -2.1789 24 1 7.2408 2.0809 -2.5675 25 1 4.2527 -0.8376 5.6089 26 1 1.7377 -0.4138 2.7630 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396287652.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:39 Heat of formation + Delta-G solvation = 12.910951 kcal Electronic energy + Delta-G solvation = -15228.642128 eV Core-core repulsion = 12555.975478 eV Total energy + Delta-G solvation = -2672.666650 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.49288 -39.54067 -37.22427 -36.71390 -34.96528 -32.04373 -30.65923 -27.97630 -26.39356 -23.85446 -22.99130 -20.89423 -19.80009 -19.36149 -17.81741 -17.19557 -16.73000 -16.45965 -15.71909 -15.55597 -15.19550 -14.88358 -14.69950 -14.21542 -13.92985 -13.76612 -13.58075 -13.39082 -12.85685 -12.83537 -12.40198 -12.11808 -11.91492 -11.72807 -11.44957 -11.14282 -11.00759 -10.10383 -9.35637 -8.99558 -8.65289 -6.53837 -0.83400 0.43193 0.68800 1.07926 1.12100 1.41897 1.46766 1.61409 1.95925 1.96485 2.10080 2.15830 2.77035 3.40829 3.44971 3.54291 4.16752 4.18275 4.31635 4.48068 4.70680 4.90628 5.00176 5.13940 5.30262 5.47297 5.68478 5.84968 5.98458 6.36635 6.39457 6.48434 6.60947 6.88275 7.96130 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.020092 B = 0.007674 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.281118 B = 3647.967799 C = 4959.412287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C 0.297 3.703 3 C -0.210 4.210 4 C -0.001 4.001 5 C -0.221 4.221 6 C 0.139 3.861 7 C -0.415 4.415 8 H 0.104 0.896 9 C 0.039 3.961 10 N -0.763 5.763 11 Si 0.988 3.012 12 H -0.248 1.248 13 H -0.261 1.261 14 H -0.263 1.263 15 C -0.214 4.214 16 S 0.205 5.795 17 C -0.304 4.304 18 C 0.419 3.581 19 O -0.504 6.504 20 C -0.062 4.062 21 C -0.024 4.024 22 H 0.117 0.883 23 H 0.125 0.875 24 H 0.307 0.693 25 H 0.158 0.842 26 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.419 -1.981 3.570 10.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.211 5.211 2 C -0.011 4.011 3 C -0.220 4.220 4 C -0.022 4.022 5 C -0.245 4.245 6 C 0.132 3.868 7 C -0.440 4.440 8 H 0.122 0.878 9 C -0.185 4.185 10 N -0.383 5.383 11 Si 0.807 3.193 12 H -0.171 1.171 13 H -0.186 1.186 14 H -0.187 1.187 15 C -0.331 4.331 16 S 0.475 5.525 17 C -0.421 4.421 18 C 0.281 3.719 19 O -0.382 6.382 20 C -0.099 4.099 21 C -0.035 4.035 22 H 0.135 0.865 23 H 0.143 0.857 24 H 0.119 0.881 25 H 0.174 0.826 26 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.590 -1.910 4.291 9.790 hybrid contribution -0.782 0.266 -1.255 1.503 sum 7.808 -1.645 3.035 8.537 Atomic orbital electron populations 1.81068 1.13052 1.17188 1.09807 1.26028 0.92792 0.90686 0.91604 1.15996 0.82162 1.30473 0.93396 1.20209 0.94535 0.92725 0.94768 1.20513 0.92114 1.13946 0.97880 1.18331 0.93479 0.87161 0.87802 1.20302 0.91499 1.23592 1.08650 0.87798 1.27021 1.06088 0.92060 0.93369 1.69734 1.41269 1.13268 1.14072 0.85022 0.74515 0.80006 0.79806 1.17073 1.18569 1.18710 1.24439 0.95402 1.14856 0.98451 1.83009 1.02283 1.71718 0.95504 1.24369 0.99132 1.17087 1.01519 1.22580 0.92425 0.69193 0.87653 1.90554 1.27132 1.38854 1.81640 1.20568 1.00165 0.97890 0.91237 1.18678 0.92002 1.00864 0.91925 0.86517 0.85720 0.88114 0.82568 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -24.45 18.54 19.00 0.35 -24.09 15 2 C 0.30 13.18 15.01 88.33 1.33 14.51 15 3 C -0.21 -9.16 5.96 -19.35 -0.12 -9.28 15 4 C 0.00 -0.04 9.55 22.04 0.21 0.17 15 5 C -0.22 -9.61 8.56 22.37 0.19 -9.42 15 6 C 0.14 6.04 5.72 -19.95 -0.11 5.93 15 7 C -0.42 -16.80 8.90 23.30 0.21 -16.60 15 8 H 0.10 3.87 7.88 -2.91 -0.02 3.85 15 9 C 0.04 1.46 5.12 85.38 0.44 1.90 15 10 N -0.76 -30.53 10.98 21.89 0.24 -30.29 15 11 Si 0.99 27.96 29.60 68.60 2.03 29.99 15 12 H -0.25 -6.80 7.11 99.48 0.71 -6.09 15 13 H -0.26 -7.28 7.11 99.48 0.71 -6.57 15 14 H -0.26 -7.26 7.11 99.48 0.71 -6.55 15 15 C -0.21 -8.79 6.56 24.85 0.16 -8.63 15 16 S 0.20 6.47 23.01 -56.49 -1.30 5.17 15 17 C -0.30 -9.95 6.18 22.51 0.14 -9.81 15 18 C 0.42 11.52 11.47 68.70 0.79 12.30 15 19 O -0.50 -17.80 17.45 -3.35 -0.06 -17.86 15 20 C -0.06 -2.45 9.43 22.00 0.21 -2.24 15 21 C -0.02 -1.04 6.00 -20.12 -0.12 -1.16 15 22 H 0.12 4.37 8.06 -2.91 -0.02 4.35 15 23 H 0.13 5.43 6.15 -2.91 -0.02 5.41 15 24 H 0.31 10.74 8.29 -92.71 -0.77 9.98 15 25 H 0.16 2.56 8.06 -2.91 -0.02 2.53 15 26 H 0.12 5.07 7.89 -2.91 -0.02 5.04 15 Total: -1.00 -53.28 265.69 5.83 -47.45 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 1.24 Total: 11.95 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 3.32 Total: -22.32 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.59 Total: -54.38 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.06 Total: -17.86 kcal Atomic # 14 Polarization: 27.96 SS G_CDS: 2.03 Total: 29.99 kcal Atomic # 16 Polarization: 6.47 SS G_CDS: -1.30 Total: 5.17 kcal Total: -53.28 5.83 -47.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396287652.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.365 kcal (2) G-P(sol) polarization free energy of solvation -53.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds