Wall clock time and date at job start Mon Mar 30 2020 06:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39503 * 120.11326 * 37.36182 * 3 2 1 5 5 C 1.37319 * 121.00364 * 180.02562 * 4 3 2 6 6 C 1.40252 * 121.80139 * 359.97438 * 5 4 3 7 7 S 1.76118 * 130.15546 * 180.02562 * 6 5 4 8 8 C 1.75482 * 91.64616 * 179.97438 * 7 6 5 9 9 C 1.41731 * 124.83793 * 179.97438 * 8 7 6 10 10 O 1.21400 * 120.00255 * 0.02562 * 9 8 7 11 11 C 1.35904 * 110.32540 * 0.02562 * 8 7 6 12 12 C 1.39123 * 115.32756 * 359.97438 * 11 8 7 13 13 C 1.41738 * 120.10740 * 217.38804 * 3 2 1 14 14 C 1.39745 * 120.47146 * 359.97438 * 13 3 2 15 15 H 1.07998 * 120.00130 * 320.56754 * 14 13 3 16 16 C 1.40569 * 119.99593 * 140.57270 * 14 13 3 17 17 N 1.30490 * 120.00327 * 339.19597 * 16 14 13 18 18 Si 1.86804 * 119.99844 * 159.20056 * 16 14 13 19 19 H 1.48498 * 109.46941 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47201 * 119.99884 * 18 16 14 21 21 H 1.48496 * 109.47132 * 239.99841 * 18 16 14 22 22 H 1.08000 * 119.50095 * 0.02562 * 4 3 2 23 23 H 1.08004 * 119.10219 * 179.97438 * 5 4 3 24 24 H 1.08004 * 119.99882 * 179.97438 * 9 8 7 25 25 H 1.07994 * 122.33739 * 180.27330 * 11 8 7 26 26 H 0.97005 * 120.00357 * 178.40766 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2684 -0.9582 -0.7323 5 6 4.6414 -0.9749 -0.7448 6 6 5.3985 -0.0364 -0.0285 7 16 7.1447 0.1462 0.1103 8 6 6.9662 1.5342 1.1691 9 6 8.0411 2.2685 1.7296 10 8 9.1867 1.9493 1.4858 11 6 5.6504 1.8040 1.3760 12 6 4.7596 0.9543 0.7279 13 6 3.2786 0.9752 0.7445 14 6 2.5917 1.9423 1.4832 15 1 1.6973 2.3946 1.0810 16 6 3.0651 2.3266 2.7498 17 7 3.8678 1.5398 3.4127 18 14 2.5451 3.9637 3.4840 19 1 1.6383 4.6641 2.5394 20 1 1.8369 3.7278 4.7679 21 1 3.7471 4.8008 3.7283 22 1 2.7224 -1.6987 -1.2980 23 1 5.1523 -1.7313 -1.3221 24 1 7.8410 3.1126 2.3730 25 1 5.3194 2.6238 1.9961 26 1 4.2128 1.8151 4.2765 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396288093.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:28 Heat of formation + Delta-G solvation = 23.395578 kcal Electronic energy + Delta-G solvation = -15591.214203 eV Core-core repulsion = 12919.002201 eV Total energy + Delta-G solvation = -2672.212002 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.79236 -38.16101 -35.70233 -34.47869 -33.99473 -30.63239 -29.31267 -26.31684 -24.21199 -22.88903 -20.86532 -20.26528 -18.19166 -17.30350 -16.35611 -15.79550 -15.40070 -14.93577 -14.06510 -13.89573 -13.52636 -13.36521 -13.06217 -13.00777 -12.21463 -12.09476 -11.94699 -11.79031 -11.61141 -11.48412 -10.90341 -10.84031 -10.49078 -10.09806 -9.90744 -9.57432 -9.37867 -8.59427 -7.69794 -7.60122 -6.97116 -5.10104 0.88306 1.97974 2.26169 2.52500 2.72680 2.75451 2.78058 2.82590 3.45312 3.47226 3.74104 3.92746 4.14441 4.97548 5.03475 5.16446 5.65649 5.79553 5.88765 6.16904 6.25940 6.37675 6.51246 6.54006 6.74345 7.08321 7.20911 7.26169 7.43179 7.70384 7.94982 7.99533 8.09909 8.62906 9.39407 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.016225 B = 0.010580 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.347506 B = 2645.952090 C = 4230.109205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.301 3.699 3 C -0.190 4.190 4 C 0.020 3.980 5 C -0.229 4.229 6 C -0.045 4.045 7 S 0.095 5.905 8 C -0.369 4.369 9 C 0.412 3.588 10 O -0.498 6.498 11 C 0.052 3.948 12 C -0.154 4.154 13 C 0.207 3.793 14 C -0.423 4.423 15 H 0.101 0.899 16 C 0.077 3.923 17 N -0.738 5.738 18 Si 0.907 3.093 19 H -0.251 1.251 20 H -0.265 1.265 21 H -0.260 1.260 22 H 0.111 0.889 23 H 0.108 0.892 24 H 0.094 0.906 25 H 0.136 0.864 26 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.162 2.037 -0.432 3.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.010 4.010 3 C -0.198 4.198 4 C -0.004 4.004 5 C -0.255 4.255 6 C -0.163 4.163 7 S 0.361 5.639 8 C -0.484 4.484 9 C 0.276 3.724 10 O -0.378 6.378 11 C 0.020 3.980 12 C -0.160 4.160 13 C 0.199 3.801 14 C -0.449 4.449 15 H 0.119 0.881 16 C -0.150 4.150 17 N -0.358 5.358 18 Si 0.729 3.271 19 H -0.174 1.174 20 H -0.190 1.190 21 H -0.184 1.184 22 H 0.129 0.871 23 H 0.127 0.873 24 H 0.111 0.889 25 H 0.154 0.846 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.486 1.114 -0.844 3.756 hybrid contribution -1.089 1.344 1.167 2.086 sum 2.397 2.457 0.323 3.448 Atomic orbital electron populations 1.81049 1.12558 1.11323 1.12886 1.25579 0.92482 0.91619 0.91271 1.15697 0.83768 1.04141 1.16214 1.20421 0.93075 0.94214 0.92675 1.19491 0.92584 1.03501 1.09875 1.23122 0.96008 0.98295 0.98882 1.83755 1.01610 1.29344 1.49173 1.23593 0.98694 1.08981 1.17171 1.21655 0.86524 0.85196 0.79012 1.90510 1.24577 1.67195 1.55489 1.20563 0.89902 0.96101 0.91421 1.18868 0.93553 0.99149 1.04463 1.18120 0.88149 0.87460 0.86354 1.19798 1.09413 1.16259 0.99428 0.88142 1.26201 0.93179 0.98629 0.96963 1.69672 1.20333 1.33854 1.11984 0.86215 0.80545 0.80473 0.79899 1.17407 1.18980 1.18439 0.87060 0.87346 0.88950 0.84599 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.15 18.54 41.84 0.78 -10.37 15 2 C 0.30 6.46 14.25 -22.47 -0.32 6.14 15 3 C -0.19 -3.95 5.79 -106.16 -0.61 -4.57 15 4 C 0.02 0.38 9.66 -39.44 -0.38 -0.01 15 5 C -0.23 -4.23 9.99 -39.16 -0.39 -4.62 15 6 C -0.05 -0.91 6.50 -38.14 -0.25 -1.16 15 7 S 0.10 1.80 22.94 -107.50 -2.47 -0.67 15 8 C -0.37 -6.99 6.19 -39.09 -0.24 -7.23 15 9 C 0.41 7.13 11.36 32.07 0.36 7.49 15 10 O -0.50 -9.98 17.61 5.45 0.10 -9.88 15 11 C 0.05 1.02 8.18 -40.09 -0.33 0.69 15 12 C -0.15 -3.25 5.51 -104.83 -0.58 -3.83 15 13 C 0.21 4.53 5.52 -103.94 -0.57 3.95 15 14 C -0.42 -9.13 8.10 -38.14 -0.31 -9.44 15 15 H 0.10 2.18 7.66 -52.49 -0.40 1.78 15 16 C 0.08 1.54 3.80 -17.24 -0.07 1.48 15 17 N -0.74 -15.15 10.87 55.58 0.60 -14.54 15 18 Si 0.91 15.00 29.61 -169.99 -5.03 9.97 15 19 H -0.25 -4.25 7.11 56.52 0.40 -3.85 15 20 H -0.27 -4.44 7.11 56.52 0.40 -4.04 15 21 H -0.26 -4.08 7.11 56.52 0.40 -3.68 15 22 H 0.11 1.72 8.06 -52.49 -0.42 1.30 15 23 H 0.11 1.74 8.06 -52.48 -0.42 1.31 15 24 H 0.09 1.25 8.06 -52.48 -0.42 0.83 15 25 H 0.14 2.53 6.06 -52.49 -0.32 2.21 15 26 H 0.30 5.44 8.29 -40.82 -0.34 5.10 15 LS Contribution 261.92 15.07 3.95 3.95 Total: -1.00 -24.81 261.92 -6.89 -31.69 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -1.12 Total: 0.96 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -3.69 Total: -11.10 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 1.38 Total: -24.91 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.10 Total: -9.88 kcal Atomic # 14 Polarization: 15.00 SS G_CDS: -5.03 Total: 9.97 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.47 Total: -0.67 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -24.81 -6.89 -31.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396288093.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.087 kcal (2) G-P(sol) polarization free energy of solvation -24.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds