Wall clock time and date at job start Mon Mar 30 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38598 * 119.84101 * 312.33831 * 3 2 1 5 5 C 1.40505 * 119.92630 * 179.97438 * 4 3 2 6 6 C 1.40561 * 119.83397 * 180.02562 * 5 4 3 7 7 H 1.07996 * 120.00055 * 154.36347 * 6 5 4 8 8 C 1.40421 * 120.00412 * 334.37052 * 6 5 4 9 9 N 1.30561 * 119.99485 * 342.47560 * 8 6 5 10 10 Si 1.86797 * 120.00375 * 162.47781 * 8 6 5 11 11 H 1.48496 * 109.47186 * 59.99488 * 10 8 6 12 12 H 1.48498 * 109.47006 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46839 * 299.99737 * 10 8 6 14 14 C 1.42233 * 120.32997 * 0.02562 * 5 4 3 15 15 S 1.76074 * 130.46303 * 179.97438 * 14 5 4 16 16 C 1.75482 * 91.52133 * 179.81671 * 15 14 5 17 17 C 1.32183 * 110.75616 * 0.34052 * 16 15 14 18 18 C 1.39554 * 120.15610 * 359.97438 * 14 5 4 19 19 C 1.40944 * 119.83950 * 132.36637 * 3 2 1 20 20 C 1.46257 * 119.77308 * 359.97438 * 19 3 2 21 21 O 1.21388 * 119.99749 * 180.02562 * 20 19 3 22 22 H 1.08004 * 120.03602 * 0.03314 * 4 3 2 23 23 H 0.97000 * 119.99579 * 180.02562 * 9 8 6 24 24 H 1.08005 * 124.62572 * 180.20175 * 16 15 14 25 25 H 1.07997 * 122.07555 * 179.86327 * 17 16 15 26 26 H 1.08007 * 119.99961 * 0.04135 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2580 -0.8087 0.8887 5 6 4.6630 -0.8099 0.8898 6 6 5.3608 -1.6319 1.7915 7 1 6.3608 -1.9648 1.5559 8 6 4.7577 -2.0205 2.9986 9 7 3.7197 -1.3691 3.4490 10 14 5.4406 -3.4692 3.9601 11 1 6.8505 -3.1935 4.3359 12 1 4.6312 -3.6738 5.1882 13 1 5.3824 -4.6924 3.1200 14 6 5.3827 0.0165 -0.0168 15 16 7.1163 0.2242 -0.2439 16 6 6.8557 1.3887 -1.5305 17 6 5.5638 1.5810 -1.7336 18 6 4.6967 0.8348 -0.9153 19 6 3.2689 0.8248 -0.9033 20 6 2.5287 1.6743 -1.8359 21 8 3.1282 2.3853 -2.6159 22 1 2.7162 -1.4386 1.5788 23 1 3.3033 -1.6373 4.2830 24 1 7.6434 1.8829 -2.0799 25 1 5.1968 2.2650 -2.4845 26 1 1.4486 1.6690 -1.8303 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396288200.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:04 Heat of formation + Delta-G solvation = 23.599587 kcal Electronic energy + Delta-G solvation = -15581.055168 eV Core-core repulsion = 12908.852012 eV Total energy + Delta-G solvation = -2672.203156 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.13854 -37.25840 -36.17134 -35.24419 -33.46084 -30.88873 -28.54392 -26.64879 -23.48970 -23.27382 -20.83873 -20.34371 -17.89696 -16.85649 -16.60227 -16.14597 -15.21054 -14.46361 -14.06534 -13.73471 -13.52999 -13.25268 -12.97515 -12.85178 -12.50574 -12.24430 -12.19011 -11.84561 -11.57387 -11.31729 -11.11251 -10.80252 -10.57628 -10.18903 -9.88764 -9.66054 -8.73161 -8.59308 -7.69015 -7.49088 -7.09644 -4.98532 1.16656 1.71230 2.47283 2.63965 2.75027 2.77885 2.93245 3.03914 3.25817 3.32880 3.46141 3.74978 4.26635 4.63813 5.06044 5.19748 5.54486 6.03096 6.13404 6.18998 6.35619 6.48529 6.70221 6.74879 6.90521 7.11017 7.17718 7.35971 7.49295 7.77949 8.01236 8.09522 8.12288 8.39026 9.40154 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.009423 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.223063 B = 2970.643193 C = 4456.747943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.275 3.725 3 C 0.050 3.950 4 C -0.133 4.133 5 C 0.159 3.841 6 C -0.401 4.401 7 H 0.097 0.903 8 C 0.069 3.931 9 N -0.743 5.743 10 Si 0.922 3.078 11 H -0.256 1.256 12 H -0.270 1.270 13 H -0.254 1.254 14 C -0.214 4.214 15 S 0.060 5.940 16 C -0.209 4.209 17 C -0.124 4.124 18 C 0.025 3.975 19 C -0.279 4.279 20 C 0.380 3.620 21 O -0.507 6.507 22 H 0.136 0.864 23 H 0.299 0.701 24 H 0.154 0.846 25 H 0.149 0.851 26 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 -1.641 -0.170 4.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.039 4.039 3 C 0.045 3.955 4 C -0.159 4.159 5 C 0.152 3.848 6 C -0.427 4.427 7 H 0.115 0.885 8 C -0.157 4.157 9 N -0.363 5.363 10 Si 0.744 3.256 11 H -0.180 1.180 12 H -0.195 1.195 13 H -0.178 1.178 14 C -0.330 4.330 15 S 0.323 5.677 16 C -0.343 4.343 17 C -0.155 4.155 18 C 0.016 3.984 19 C -0.286 4.286 20 C 0.247 3.753 21 O -0.388 6.388 22 H 0.154 0.846 23 H 0.111 0.889 24 H 0.172 0.828 25 H 0.167 0.833 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.252 -1.832 0.296 4.640 hybrid contribution -0.669 -0.012 0.029 0.669 sum 3.584 -1.845 0.325 4.044 Atomic orbital electron populations 1.81109 1.12342 1.09726 1.09834 1.26121 0.93090 0.92444 0.92236 1.15738 0.82690 0.99074 0.97974 1.21080 0.93233 1.01755 0.99796 1.16890 0.91029 0.88026 0.88841 1.20017 1.01835 1.21226 0.99585 0.88480 1.26290 0.94068 0.97299 0.98026 1.69641 1.15508 1.32687 1.18504 0.86071 0.80412 0.80390 0.78713 1.18026 1.19488 1.17841 1.22787 0.94695 1.07603 1.07958 1.83616 1.05334 1.43465 1.35246 1.25169 0.99885 1.05260 1.04018 1.20326 0.91913 1.01644 1.01648 1.17788 0.92265 0.94585 0.93749 1.19319 0.91498 1.10639 1.07171 1.23236 0.93379 0.78558 0.80134 1.90358 1.73351 1.37736 1.37327 0.84631 0.88926 0.82848 0.83340 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.23 18.54 41.83 0.78 -8.45 15 2 C 0.28 5.51 13.81 -22.48 -0.31 5.20 15 3 C 0.05 1.05 5.74 -106.81 -0.61 0.43 15 4 C -0.13 -2.90 8.31 -38.60 -0.32 -3.22 15 5 C 0.16 3.55 5.58 -106.63 -0.60 2.95 15 6 C -0.40 -8.57 8.80 -37.88 -0.33 -8.90 15 7 H 0.10 1.98 7.73 -52.49 -0.41 1.57 15 8 C 0.07 1.38 5.12 -17.27 -0.09 1.29 15 9 N -0.74 -15.47 10.97 55.57 0.61 -14.86 15 10 Si 0.92 14.95 29.60 -169.99 -5.03 9.91 15 11 H -0.26 -4.14 7.11 56.52 0.40 -3.74 15 12 H -0.27 -4.30 7.11 56.52 0.40 -3.89 15 13 H -0.25 -4.13 7.11 56.52 0.40 -3.72 15 14 C -0.21 -4.67 6.37 -37.56 -0.24 -4.91 15 15 S 0.06 1.11 22.85 -107.50 -2.46 -1.35 15 16 C -0.21 -3.65 11.08 28.81 0.32 -3.33 15 17 C -0.12 -2.46 9.36 -40.60 -0.38 -2.84 15 18 C 0.03 0.55 5.85 -106.74 -0.62 -0.08 15 19 C -0.28 -5.92 5.96 -103.89 -0.62 -6.54 15 20 C 0.38 7.61 10.95 33.95 0.37 7.99 15 21 O -0.51 -10.97 14.97 5.46 0.08 -10.89 15 22 H 0.14 2.97 6.17 -52.48 -0.32 2.65 15 23 H 0.30 5.58 8.29 -40.82 -0.34 5.24 15 24 H 0.15 2.15 8.06 -52.48 -0.42 1.73 15 25 H 0.15 2.94 6.02 -52.49 -0.32 2.62 15 26 H 0.07 1.23 7.12 -52.48 -0.37 0.86 15 LS Contribution 258.58 15.07 3.90 3.90 Total: -1.00 -23.86 258.58 -6.53 -30.40 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -0.98 Total: 3.31 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -3.43 Total: -11.96 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 1.39 Total: -23.32 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 14.95 SS G_CDS: -5.03 Total: 9.91 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.46 Total: -1.35 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -23.86 -6.53 -30.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396288200.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.996 kcal (2) G-P(sol) polarization free energy of solvation -23.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds