Wall clock time and date at job start Mon Mar 30 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38598 * 119.84101 * 312.33831 * 3 2 1 5 5 C 1.40505 * 119.92630 * 179.97438 * 4 3 2 6 6 C 1.40561 * 119.83397 * 180.02562 * 5 4 3 7 7 H 1.07996 * 120.00055 * 154.36347 * 6 5 4 8 8 C 1.40421 * 120.00412 * 334.37052 * 6 5 4 9 9 N 1.30561 * 119.99485 * 342.47560 * 8 6 5 10 10 Si 1.86797 * 120.00375 * 162.47781 * 8 6 5 11 11 H 1.48496 * 109.47186 * 59.99488 * 10 8 6 12 12 H 1.48498 * 109.47006 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46839 * 299.99737 * 10 8 6 14 14 C 1.42233 * 120.32997 * 0.02562 * 5 4 3 15 15 S 1.76074 * 130.46303 * 179.97438 * 14 5 4 16 16 C 1.75482 * 91.52133 * 179.81671 * 15 14 5 17 17 C 1.32183 * 110.75616 * 0.34052 * 16 15 14 18 18 C 1.39554 * 120.15610 * 359.97438 * 14 5 4 19 19 C 1.40944 * 119.83950 * 132.36637 * 3 2 1 20 20 C 1.46257 * 119.77308 * 359.97438 * 19 3 2 21 21 O 1.21388 * 119.99749 * 180.02562 * 20 19 3 22 22 H 1.08004 * 120.03602 * 0.03314 * 4 3 2 23 23 H 0.97000 * 119.99579 * 180.02562 * 9 8 6 24 24 H 1.08005 * 124.62572 * 180.20175 * 16 15 14 25 25 H 1.07997 * 122.07555 * 179.86327 * 17 16 15 26 26 H 1.08007 * 119.99961 * 0.04135 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2580 -0.8087 0.8887 5 6 4.6630 -0.8099 0.8898 6 6 5.3608 -1.6319 1.7915 7 1 6.3608 -1.9648 1.5559 8 6 4.7577 -2.0205 2.9986 9 7 3.7197 -1.3691 3.4490 10 14 5.4406 -3.4692 3.9601 11 1 6.8505 -3.1935 4.3359 12 1 4.6312 -3.6738 5.1882 13 1 5.3824 -4.6924 3.1200 14 6 5.3827 0.0165 -0.0168 15 16 7.1163 0.2242 -0.2439 16 6 6.8557 1.3887 -1.5305 17 6 5.5638 1.5810 -1.7336 18 6 4.6967 0.8348 -0.9153 19 6 3.2689 0.8248 -0.9033 20 6 2.5287 1.6743 -1.8359 21 8 3.1282 2.3853 -2.6159 22 1 2.7162 -1.4386 1.5788 23 1 3.3033 -1.6373 4.2830 24 1 7.6434 1.8829 -2.0799 25 1 5.1968 2.2650 -2.4845 26 1 1.4486 1.6690 -1.8303 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396288200.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:04 Heat of formation + Delta-G solvation = 13.291035 kcal Electronic energy + Delta-G solvation = -15581.502180 eV Core-core repulsion = 12908.852012 eV Total energy + Delta-G solvation = -2672.650168 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.73441 -38.88285 -37.78735 -36.80613 -35.03610 -32.50570 -30.11277 -28.25662 -25.05594 -24.88732 -22.37842 -21.94682 -19.46064 -18.46024 -18.16631 -17.71055 -16.67844 -16.05112 -15.60581 -15.36569 -15.01426 -14.81733 -14.52541 -14.49223 -14.06773 -13.81714 -13.77129 -13.36860 -12.96357 -12.86110 -12.56384 -12.36546 -11.99194 -11.72029 -11.40391 -11.18875 -10.34325 -10.18770 -9.27151 -9.02598 -8.63217 -6.61757 -0.42412 0.10998 0.98663 1.26604 1.39232 1.41369 1.49149 1.54624 1.62491 1.82816 2.11060 2.14020 2.69243 2.99647 3.42255 3.64869 4.15588 4.43204 4.59156 4.62665 4.80907 4.94113 5.13962 5.18970 5.35626 5.48911 5.53333 5.77993 5.89595 6.15509 6.40394 6.46355 6.49676 6.79559 7.90561 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.009423 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.223063 B = 2970.643193 C = 4456.747943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.284 3.716 3 C 0.054 3.946 4 C -0.149 4.149 5 C 0.138 3.862 6 C -0.415 4.415 7 H 0.103 0.897 8 C 0.039 3.961 9 N -0.768 5.768 10 Si 0.988 3.012 11 H -0.252 1.252 12 H -0.264 1.264 13 H -0.253 1.253 14 C -0.247 4.247 15 S 0.088 5.912 16 C -0.184 4.184 17 C -0.151 4.151 18 C 0.011 3.989 19 C -0.298 4.298 20 C 0.385 3.615 21 O -0.524 6.524 22 H 0.129 0.871 23 H 0.308 0.692 24 H 0.194 0.806 25 H 0.147 0.853 26 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.705 -2.089 0.153 6.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.030 4.030 3 C 0.049 3.951 4 C -0.174 4.174 5 C 0.132 3.868 6 C -0.440 4.440 7 H 0.121 0.879 8 C -0.185 4.185 9 N -0.389 5.389 10 Si 0.807 3.193 11 H -0.176 1.176 12 H -0.188 1.188 13 H -0.177 1.177 14 C -0.363 4.363 15 S 0.352 5.648 16 C -0.318 4.318 17 C -0.182 4.182 18 C 0.001 3.999 19 C -0.305 4.305 20 C 0.253 3.747 21 O -0.406 6.406 22 H 0.147 0.853 23 H 0.120 0.880 24 H 0.211 0.789 25 H 0.165 0.835 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.417 -2.270 0.615 5.905 hybrid contribution -0.976 0.142 -0.055 0.988 sum 4.441 -2.127 0.560 4.956 Atomic orbital electron populations 1.81111 1.12267 1.09907 1.10027 1.25938 0.92778 0.92236 0.92020 1.15714 0.82907 0.98776 0.97689 1.21051 0.93463 1.02550 1.00384 1.17170 0.91454 0.88618 0.89566 1.20298 1.02277 1.21342 1.00092 0.87929 1.27069 0.94005 0.99132 0.98311 1.69662 1.16233 1.33796 1.19207 0.85101 0.79835 0.76974 0.77421 1.17574 1.18758 1.17706 1.23082 0.96803 1.08061 1.08370 1.83426 1.02859 1.43303 1.35199 1.25629 1.00048 1.03495 1.02621 1.20327 0.92641 1.02748 1.02454 1.18149 0.92826 0.94843 0.94082 1.19531 0.91907 1.11279 1.07786 1.23406 0.94126 0.77779 0.79362 1.90344 1.73869 1.38422 1.37958 0.85301 0.87989 0.78851 0.83526 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -18.33 18.54 19.00 0.35 -17.97 15 2 C 0.28 11.36 13.81 88.33 1.22 12.58 15 3 C 0.05 2.29 5.74 -21.28 -0.12 2.16 15 4 C -0.15 -6.62 8.31 22.91 0.19 -6.43 15 5 C 0.14 6.25 5.58 -21.17 -0.12 6.13 15 6 C -0.42 -17.66 8.80 23.37 0.21 -17.46 15 7 H 0.10 4.12 7.73 -2.91 -0.02 4.09 15 8 C 0.04 1.52 5.12 85.41 0.44 1.96 15 9 N -0.77 -31.88 10.97 21.91 0.24 -31.64 15 10 Si 0.99 29.40 29.60 68.60 2.03 31.43 15 11 H -0.25 -7.30 7.11 99.48 0.71 -6.59 15 12 H -0.26 -7.50 7.11 99.48 0.71 -6.79 15 13 H -0.25 -7.45 7.11 99.48 0.71 -6.75 15 14 C -0.25 -10.75 6.37 23.58 0.15 -10.60 15 15 S 0.09 3.13 22.85 -56.49 -1.29 1.84 15 16 C -0.18 -5.98 11.08 66.81 0.74 -5.24 15 17 C -0.15 -5.83 9.36 21.85 0.20 -5.63 15 18 C 0.01 0.46 5.85 -21.24 -0.12 0.34 15 19 C -0.30 -12.75 5.96 -19.39 -0.12 -12.86 15 20 C 0.39 15.35 10.95 69.91 0.77 16.12 15 21 O -0.52 -22.53 14.97 -3.37 -0.05 -22.58 15 22 H 0.13 5.80 6.17 -2.91 -0.02 5.78 15 23 H 0.31 11.34 8.29 -92.71 -0.77 10.57 15 24 H 0.19 4.63 8.06 -2.91 -0.02 4.61 15 25 H 0.15 5.71 6.02 -2.91 -0.02 5.69 15 26 H 0.09 3.19 7.12 -2.91 -0.02 3.17 15 Total: -1.00 -50.04 258.58 5.97 -44.08 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 1.25 Total: 13.79 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 3.43 Total: -18.94 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.59 Total: -49.61 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 14 Polarization: 29.40 SS G_CDS: 2.03 Total: 31.43 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.29 Total: 1.84 kcal Total: -50.04 5.97 -44.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396288200.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.367 kcal (2) G-P(sol) polarization free energy of solvation -50.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds