Wall clock time and date at job start Mon Mar 30 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.42067 * 119.92386 * 86.74596 * 3 2 1 5 5 C 1.45196 * 129.01146 * 0.02562 * 4 3 2 6 6 C 1.31936 * 114.92846 * 180.24869 * 5 4 3 7 7 S 1.75277 * 111.38863 * 359.62129 * 6 5 4 8 8 C 1.39870 * 119.11538 * 180.02562 * 4 3 2 9 9 C 1.41972 * 120.19018 * 359.97438 * 8 4 3 10 10 C 1.46999 * 119.65145 * 180.02562 * 9 8 4 11 11 O 1.21280 * 120.00215 * 359.97438 * 10 9 8 12 12 C 1.38459 * 120.69232 * 359.97438 * 9 8 4 13 13 C 1.40714 * 119.95985 * 0.02562 * 12 9 8 14 14 C 1.40672 * 120.05316 * 180.02562 * 13 12 9 15 15 H 1.07997 * 119.99555 * 153.95939 * 14 13 12 16 16 C 1.40243 * 119.99957 * 333.95460 * 14 13 12 17 17 N 1.30666 * 120.00338 * 343.06090 * 16 14 13 18 18 Si 1.86800 * 119.99893 * 163.05793 * 16 14 13 19 19 H 1.48507 * 109.47146 * 94.22665 * 18 16 14 20 20 H 1.48503 * 109.47432 * 214.22862 * 18 16 14 21 21 H 1.48498 * 109.47154 * 334.22953 * 18 16 14 22 22 H 1.08001 * 122.53828 * 359.96981 * 5 4 3 23 23 H 1.08003 * 124.30880 * 179.71229 * 6 5 4 24 24 H 1.08006 * 119.99807 * 180.02562 * 10 9 8 25 25 H 1.08002 * 120.02087 * 179.97438 * 12 9 8 26 26 H 0.96997 * 120.00133 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2767 -0.0689 -1.2293 5 6 2.7549 -0.1456 -2.5821 6 6 3.6715 -0.2044 -3.5292 7 16 5.2895 -0.1609 -2.8565 8 6 4.6753 -0.0677 -1.2096 9 6 5.3718 0.0028 0.0255 10 6 6.8418 0.0038 0.0325 11 8 7.4532 -0.0558 -1.0132 12 6 4.6811 0.0717 1.2235 13 6 3.2739 0.0717 1.2243 14 6 2.5701 0.1421 2.4403 15 1 1.5723 0.5547 2.4635 16 6 3.1641 -0.3235 3.6223 17 7 4.2056 -1.1105 3.5642 18 14 2.4665 0.1814 5.2799 19 1 1.5120 -0.8540 5.7514 20 1 3.5724 0.3188 6.2615 21 1 1.7603 1.4807 5.1448 22 1 1.6965 -0.1583 -2.7966 23 1 3.4528 -0.2694 -4.5848 24 1 7.3774 0.0569 0.9689 25 1 5.2219 0.1246 2.1569 26 1 4.6167 -1.4322 4.3817 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396288289.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:47 Heat of formation + Delta-G solvation = 23.218599 kcal Electronic energy + Delta-G solvation = -15561.818176 eV Core-core repulsion = 12889.598500 eV Total energy + Delta-G solvation = -2672.219677 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.03286 -37.81877 -35.41773 -35.15282 -33.28096 -30.81119 -28.85080 -26.08862 -24.49939 -22.76126 -20.73320 -19.98945 -18.42073 -17.30154 -16.11384 -15.85842 -15.24960 -14.63400 -14.19814 -13.86371 -13.82013 -13.17430 -12.98270 -12.91947 -12.24200 -11.95334 -11.81900 -11.76950 -11.47833 -11.24260 -11.00274 -10.75328 -10.48138 -10.26503 -9.97488 -9.61524 -9.10128 -8.55334 -7.75200 -7.45253 -7.07578 -4.92215 1.10333 1.82048 2.41426 2.56150 2.81556 2.86319 2.88539 2.99282 3.19314 3.55163 3.85059 3.98349 4.27247 4.83277 5.14211 5.27344 5.36599 5.77207 5.89023 6.13788 6.22467 6.45348 6.58303 6.70200 6.81015 6.89875 7.07777 7.24960 7.50224 7.85579 7.94870 8.12741 8.21791 8.71434 9.51887 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.022235 B = 0.008232 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.946761 B = 3400.365185 C = 4578.433479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.300 3.700 3 C -0.146 4.146 4 C 0.001 3.999 5 C -0.129 4.129 6 C -0.217 4.217 7 S 0.089 5.911 8 C -0.190 4.190 9 C -0.141 4.141 10 C 0.379 3.621 11 O -0.471 6.471 12 C -0.039 4.039 13 C 0.133 3.867 14 C -0.420 4.420 15 H 0.092 0.908 16 C 0.075 3.925 17 N -0.767 5.767 18 Si 0.919 3.081 19 H -0.264 1.264 20 H -0.268 1.268 21 H -0.254 1.254 22 H 0.128 0.872 23 H 0.153 0.847 24 H 0.099 0.901 25 H 0.145 0.855 26 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.344 1.416 -0.775 4.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.009 4.009 3 C -0.155 4.155 4 C -0.009 4.009 5 C -0.161 4.161 6 C -0.351 4.351 7 S 0.351 5.649 8 C -0.306 4.306 9 C -0.146 4.146 10 C 0.240 3.760 11 O -0.346 6.346 12 C -0.060 4.060 13 C 0.126 3.874 14 C -0.448 4.448 15 H 0.110 0.890 16 C -0.148 4.148 17 N -0.389 5.389 18 Si 0.742 3.258 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.177 1.177 22 H 0.145 0.855 23 H 0.171 0.829 24 H 0.115 0.885 25 H 0.162 0.838 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.520 1.197 -1.889 5.043 hybrid contribution -1.421 0.054 1.467 2.043 sum 3.099 1.251 -0.422 3.369 Atomic orbital electron populations 1.81022 1.12558 1.14663 1.09889 1.25598 0.92554 0.91490 0.91296 1.15656 0.83361 1.24295 0.92209 1.18661 0.91128 0.99523 0.91544 1.20852 0.99714 1.04418 0.91130 1.25140 0.98143 1.09337 1.02513 1.84076 1.04558 1.79015 0.97213 1.21974 0.94985 1.17940 0.95719 1.19996 0.94757 1.07845 0.92025 1.24129 0.89060 0.69965 0.92865 1.90437 1.70901 1.36199 1.37090 1.21789 0.94158 0.94351 0.95696 1.17159 0.91324 0.88003 0.90901 1.19825 1.02241 1.31815 0.90884 0.88996 1.26156 0.93967 0.92157 1.02555 1.69639 1.16933 1.19738 1.32638 0.86066 0.79877 0.80891 0.79013 1.18841 1.19237 1.17729 0.85458 0.82926 0.88506 0.83795 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.80 18.54 41.84 0.78 -11.03 15 2 C 0.30 6.91 13.62 -22.47 -0.31 6.61 15 3 C -0.15 -3.29 5.86 -105.26 -0.62 -3.91 15 4 C 0.00 0.03 5.98 -105.06 -0.63 -0.60 15 5 C -0.13 -2.45 9.94 -38.73 -0.38 -2.83 15 6 C -0.22 -3.70 11.02 28.82 0.32 -3.38 15 7 S 0.09 1.66 21.30 -107.50 -2.29 -0.63 15 8 C -0.19 -3.98 6.36 -37.54 -0.24 -4.22 15 9 C -0.14 -2.79 5.88 -104.84 -0.62 -3.41 15 10 C 0.38 6.55 11.41 34.28 0.39 6.94 15 11 O -0.47 -9.17 15.73 5.56 0.09 -9.08 15 12 C -0.04 -0.80 8.34 -38.57 -0.32 -1.12 15 13 C 0.13 2.97 5.56 -106.80 -0.59 2.38 15 14 C -0.42 -9.38 8.43 -37.91 -0.32 -9.70 15 15 H 0.09 2.10 7.24 -52.49 -0.38 1.72 15 16 C 0.07 1.53 5.14 -17.29 -0.09 1.44 15 17 N -0.77 -15.61 10.98 55.56 0.61 -15.00 15 18 Si 0.92 15.65 29.59 -169.99 -5.03 10.61 15 19 H -0.26 -4.59 7.11 56.52 0.40 -4.19 15 20 H -0.27 -4.34 7.11 56.52 0.40 -3.94 15 21 H -0.25 -4.41 7.11 56.52 0.40 -4.01 15 22 H 0.13 2.27 8.03 -52.49 -0.42 1.85 15 23 H 0.15 2.08 8.06 -52.48 -0.42 1.66 15 24 H 0.10 1.29 8.06 -52.48 -0.42 0.87 15 25 H 0.14 2.76 6.20 -52.49 -0.33 2.44 15 26 H 0.30 5.34 8.29 -40.82 -0.34 5.00 15 LS Contribution 260.89 15.07 3.93 3.93 Total: -1.00 -25.18 260.89 -6.43 -31.61 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -1.11 Total: 1.40 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -3.41 Total: -11.82 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 1.39 Total: -26.03 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 15.65 SS G_CDS: -5.03 Total: 10.61 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.29 Total: -0.63 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -25.18 -6.43 -31.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396288289.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.830 kcal (2) G-P(sol) polarization free energy of solvation -25.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds