Wall clock time and date at job start Mon Mar 30 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.42067 * 119.92386 * 86.74596 * 3 2 1 5 5 C 1.45196 * 129.01146 * 0.02562 * 4 3 2 6 6 C 1.31936 * 114.92846 * 180.24869 * 5 4 3 7 7 S 1.75277 * 111.38863 * 359.62129 * 6 5 4 8 8 C 1.39870 * 119.11538 * 180.02562 * 4 3 2 9 9 C 1.41972 * 120.19018 * 359.97438 * 8 4 3 10 10 C 1.46999 * 119.65145 * 180.02562 * 9 8 4 11 11 O 1.21280 * 120.00215 * 359.97438 * 10 9 8 12 12 C 1.38459 * 120.69232 * 359.97438 * 9 8 4 13 13 C 1.40714 * 119.95985 * 0.02562 * 12 9 8 14 14 C 1.40672 * 120.05316 * 180.02562 * 13 12 9 15 15 H 1.07997 * 119.99555 * 153.95939 * 14 13 12 16 16 C 1.40243 * 119.99957 * 333.95460 * 14 13 12 17 17 N 1.30666 * 120.00338 * 343.06090 * 16 14 13 18 18 Si 1.86800 * 119.99893 * 163.05793 * 16 14 13 19 19 H 1.48507 * 109.47146 * 94.22665 * 18 16 14 20 20 H 1.48503 * 109.47432 * 214.22862 * 18 16 14 21 21 H 1.48498 * 109.47154 * 334.22953 * 18 16 14 22 22 H 1.08001 * 122.53828 * 359.96981 * 5 4 3 23 23 H 1.08003 * 124.30880 * 179.71229 * 6 5 4 24 24 H 1.08006 * 119.99807 * 180.02562 * 10 9 8 25 25 H 1.08002 * 120.02087 * 179.97438 * 12 9 8 26 26 H 0.96997 * 120.00133 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2767 -0.0689 -1.2293 5 6 2.7549 -0.1456 -2.5821 6 6 3.6715 -0.2044 -3.5292 7 16 5.2895 -0.1609 -2.8565 8 6 4.6753 -0.0677 -1.2096 9 6 5.3718 0.0028 0.0255 10 6 6.8418 0.0038 0.0325 11 8 7.4532 -0.0558 -1.0132 12 6 4.6811 0.0717 1.2235 13 6 3.2739 0.0717 1.2243 14 6 2.5701 0.1421 2.4403 15 1 1.5723 0.5547 2.4635 16 6 3.1641 -0.3235 3.6223 17 7 4.2056 -1.1105 3.5642 18 14 2.4665 0.1814 5.2799 19 1 1.5120 -0.8540 5.7514 20 1 3.5724 0.3188 6.2615 21 1 1.7603 1.4807 5.1448 22 1 1.6965 -0.1583 -2.7966 23 1 3.4528 -0.2694 -4.5848 24 1 7.3774 0.0569 0.9689 25 1 5.2219 0.1246 2.1569 26 1 4.6167 -1.4322 4.3817 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396288289.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:47 Heat of formation + Delta-G solvation = 11.404831 kcal Electronic energy + Delta-G solvation = -15562.330460 eV Core-core repulsion = 12889.598500 eV Total energy + Delta-G solvation = -2672.731960 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.55016 -39.32506 -37.05463 -36.84326 -34.81986 -32.41498 -30.40453 -27.69851 -26.02074 -24.27659 -22.24779 -21.47926 -20.02782 -18.91518 -17.59781 -17.36386 -16.74674 -16.12455 -15.63811 -15.40028 -15.32204 -14.71063 -14.61250 -14.46096 -13.84712 -13.58887 -13.50583 -13.31845 -13.03453 -12.72847 -12.46954 -12.35586 -11.94708 -11.79051 -11.48190 -11.13883 -10.53945 -10.14831 -9.32087 -9.00415 -8.59907 -6.58963 -0.44903 0.30819 0.94417 1.11166 1.37793 1.41988 1.52498 1.58969 1.65990 2.05989 2.15045 2.39466 2.59809 3.44349 3.48745 3.66184 3.94643 4.34406 4.45946 4.66202 4.73940 4.94602 5.04544 5.16992 5.27013 5.31047 5.51424 5.66211 5.91023 6.19067 6.46918 6.54329 6.61025 6.93719 7.99698 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.022235 B = 0.008232 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.946761 B = 3400.365185 C = 4578.433479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C 0.305 3.695 3 C -0.178 4.178 4 C -0.011 4.011 5 C -0.154 4.154 6 C -0.193 4.193 7 S 0.102 5.898 8 C -0.219 4.219 9 C -0.145 4.145 10 C 0.387 3.613 11 O -0.491 6.491 12 C -0.042 4.042 13 C 0.116 3.884 14 C -0.443 4.443 15 H 0.075 0.925 16 C 0.051 3.949 17 N -0.777 5.777 18 Si 0.979 3.021 19 H -0.269 1.269 20 H -0.246 1.246 21 H -0.263 1.263 22 H 0.134 0.866 23 H 0.193 0.807 24 H 0.150 0.850 25 H 0.156 0.844 26 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.760 1.350 -0.413 5.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.206 5.206 2 C -0.003 4.003 3 C -0.188 4.188 4 C -0.021 4.021 5 C -0.185 4.185 6 C -0.327 4.327 7 S 0.364 5.636 8 C -0.334 4.334 9 C -0.150 4.150 10 C 0.249 3.751 11 O -0.367 6.367 12 C -0.063 4.063 13 C 0.110 3.890 14 C -0.470 4.470 15 H 0.094 0.906 16 C -0.172 4.172 17 N -0.399 5.399 18 Si 0.799 3.201 19 H -0.194 1.194 20 H -0.170 1.170 21 H -0.187 1.187 22 H 0.151 0.849 23 H 0.210 0.790 24 H 0.166 0.834 25 H 0.173 0.827 26 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.956 1.124 -1.537 6.253 hybrid contribution -1.791 0.042 1.300 2.213 sum 4.166 1.166 -0.237 4.332 Atomic orbital electron populations 1.80986 1.12966 1.16047 1.10581 1.25828 0.92795 0.90965 0.90714 1.15859 0.83090 1.26671 0.93166 1.18956 0.91685 0.99256 0.92206 1.20934 1.00539 1.06483 0.90591 1.25546 0.96770 1.06295 1.04054 1.83976 1.05294 1.78587 0.95733 1.22374 0.95229 1.18385 0.97431 1.20414 0.96578 1.06531 0.91512 1.24627 0.87726 0.68591 0.94179 1.90434 1.70816 1.37069 1.38388 1.21815 0.93296 0.94774 0.96422 1.17458 0.92525 0.88115 0.90928 1.19921 1.02017 1.32942 0.92163 0.90642 1.26713 0.94222 0.91734 1.04529 1.69601 1.16963 1.19062 1.34307 0.85202 0.79572 0.79678 0.75681 1.19369 1.16964 1.18700 0.84852 0.79014 0.83439 0.82693 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.46 18.54 19.00 0.35 -25.11 15 2 C 0.31 14.55 13.62 88.33 1.20 15.75 15 3 C -0.18 -8.28 5.86 -20.28 -0.12 -8.39 15 4 C -0.01 -0.47 5.98 -20.15 -0.12 -0.59 15 5 C -0.15 -5.74 9.94 23.19 0.23 -5.51 15 6 C -0.19 -6.15 11.02 66.96 0.74 -5.42 15 7 S 0.10 3.62 21.30 -56.49 -1.20 2.41 15 8 C -0.22 -9.02 6.36 23.59 0.15 -8.87 15 9 C -0.14 -5.61 5.88 -20.00 -0.12 -5.73 15 10 C 0.39 12.46 11.41 70.12 0.80 13.26 15 11 O -0.49 -18.08 15.73 -3.03 -0.05 -18.13 15 12 C -0.04 -1.71 8.34 22.93 0.19 -1.52 15 13 C 0.12 5.30 5.56 -21.27 -0.12 5.18 15 14 C -0.44 -20.15 8.43 23.35 0.20 -19.96 15 15 H 0.08 3.59 7.24 -2.91 -0.02 3.57 15 16 C 0.05 2.02 5.14 85.35 0.44 2.46 15 17 N -0.78 -30.54 10.98 21.88 0.24 -30.30 15 18 Si 0.98 31.14 29.59 68.60 2.03 33.17 15 19 H -0.27 -8.74 7.11 99.48 0.71 -8.04 15 20 H -0.25 -6.97 7.11 99.48 0.71 -6.26 15 21 H -0.26 -8.70 7.11 99.48 0.71 -8.00 15 22 H 0.13 4.73 8.03 -2.91 -0.02 4.71 15 23 H 0.19 4.51 8.06 -2.91 -0.02 4.49 15 24 H 0.15 3.34 8.06 -2.91 -0.02 3.32 15 25 H 0.16 5.76 6.20 -2.91 -0.02 5.74 15 26 H 0.31 10.52 8.29 -92.71 -0.77 9.75 15 Total: -1.00 -54.11 260.89 6.09 -48.03 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.24 Total: 9.27 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 3.47 Total: -19.34 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.59 Total: -55.41 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.05 Total: -18.13 kcal Atomic # 14 Polarization: 31.14 SS G_CDS: 2.03 Total: 33.17 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.20 Total: 2.41 kcal Total: -54.11 6.09 -48.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396288289.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.432 kcal (2) G-P(sol) polarization free energy of solvation -54.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds